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Oryza sativa
cluster # 4402 cluster # 4402       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4402#0 length = 3818 sequences # 2  
consensus_4402#1 length = 403 sequences # 1  

consensusID : consensus_4402#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 3818
fasta sequence
                              [TCAAAAGCAGTCTATGCTGTGCTCTGATGATAGACCTGGTGGTTCACCTGCAAATGCGGGTGAGGAGATCCCTGAAGACAGGACTACGCTTAAAGATAGCAGGTTTCGCTTTGTTTACTCAAGGAAGCGATCTTGCAGGAGAAAGAATGGATTTCTCAACACTTCAGAACAAGATTCTGATCTTAAATACAGAAAAGTTACAGGTGCGTTGTTTGCTTCAGTTGCTGGCTGGGGGTCTGTTACTGAAAATGTTACTTCGAGAAGACATGGCATATTAGTACTGAGCCAGCCATTAAAATCTATTTATAAGATCATGTCTGAAGCATGCCATGTCTGGCTTCTCAATGCTCTTGTTCTCCTTCACCGTGGTGCAATGGTTTCCTTGTGGCCTGCCGTACATCTGGAGATACTTCTTGTTGATGATACTTTAGGATTGAAACACTTGCTTCTTGAGACTTCCTTAAGATCAGCTGTATCCTTATTCTGTTTACTTGTTGGATGTTTCAATTCGTATTCCAAGGCGAGTACACGCAATGAGTCAAAAATGCTATGCACCTCAGTCAGAGTTCGGATATCTGGTTTGCACGGTAGAAGCCAAGTTGTGTTTTTGATGTTCAGCTTCGTGGGGGTAAAGTACCCCAAATGGAAGCACCTGCAAGGACAGCTGCAGCATCACCATATAAAAAGGGGGCTATCTAAAGTTAATTGCGCATGTGCTGACATAAAGCAACTTACAAATGGAACTGATCAAAGAGTCTGTACTTCAACAGAACACTTCTCTAAGGGTCTATCACTCGATGCTCAGGACTCTCTGTTTTTCACAGAATCAAAATATTCAAATGTCGACCCTATCATTTTTTGTCTTGATGAGCGAAGTAAATCTGTTCAAAATCATCTGGATGTGGCAGCTGCACCTTCACTGTTGTTTTTTCACCACTTAAAATTGCGCAGTGAAAGCAACTTGACTTCTAAAAGTCTTCCGGAATTCATGCCGATTACTTTAGAAGAGGATCAGCAGTCTCTGCCACAGCACACATCTGATCTGGTTCATCTGGCTGCTTCTGCTTCTGAAGTTTGTTCTGTTTATGTTAGTCCATCTAATACTGGTTCCTTGGATATGGGTACCGCTGGTTGCATCAATCATTCTGGTTCTGCTAGCAGCAAGCTCAATACTGCTAAAAGGACTGTAAGTCTGGATTGTAATAGCAGAGGTATTGGTGGTGCCAACATAACAAGCAGGAGTTTTCCAGATCAAATTATGGATGGAAGCCTTTCTGCTGTTTGCCCTCCTCAGAAGTATCAAAAGAGGTGTTCTTCTATATCTATTCCTGGAGATAATATATCAGATCCACCAGATGATAAGCTACTTAACAAAGAAGAAAAGGCCATGCAGCCTACATCTGACTTGGTCCAGGAACTGAATGAGTATCCTATTGGTCGTGTTACACCAACTGCCCCCAGGACTCCCTACCATCGGAACCGATTTACATCCCTATCACGCACTTTTGGTGATGGTTCAAAATTATGGCAAGAAGATATTATGGTGACAGGCTTTGCTGGTGGCTCTAAGAAGCCAAGGACTCAGGTTTTGTACTCGGTTTCTCCTAGAAGTGATGAACCTGGCTCAAAACACAAAGGACATTTCCGCAAGATACAGTCTCATAGCAGTGCAAAGAGACTTCCTGATAATTCAAGAAGTGAACAGAGCAGTCCTGAGTCATTGGCTTGTGTTGCAAATGTCCTAGTTACAGTTGGTGATAGAGGATGGAGGGAGTACGATACTCAGATCACAATTGACTCTGATGGGCAGAGTGAACGGAGGATTTGTGTGAAGCTTGCAGAAGGAACTAAGTATGCTCACAAAGTTCTTCAAGTTTTGCAGCCTGGGGCGACAAACCGCTATACACATGCAATGATATGGAAAGGGGGGACAGAGTGGTGCTTAGAATTTCCTGACAGAAGTCAGTGGTTGATTTTCAAGCAAATGCATGATGAATGTTATAGTCATAACATTAGAGCTGCATCTGTTAAGAATATTCCAATTCCTGGTGTCTGCTTTGCTGAAGCTCATGATGATCATGATGCTGTATCCTTTGTACGCTCTCAAGATTATATTGGTCATATTGGAACAGATGTTGAAATGGCACTTGATGAATCTCGTGTGATATATGACATGGACAGTGATGATGAAGTGTGGGTTTCAAGATGGAGGAAACTAGGCAAGGACAGCACCTCTGTGACAGATGACTTGTTTGAGAGGATCATGGACAAATTCGAGAAACTTGCTTATAGCCACAACTGCAATGAACTCACTATTGATCAGATGAAGGAACTAGATAGTGATAACATACCACTGGACACCATTAAAGTGATACATGATTATTGGCAGGACAAGAGGAAGAAAAAGGGAATGCCACTCATTCGACACTTTCAGTCCGCTATGTGGAAGATCCACGAGCAGCAGCTACAGGAATGGGAATCAACAGCACTCAGAATACAGGGTTCATCAAATGGTTACCAAGTTAAGTTGCCTCCAAAACCTGCCTTGTTCGCCTTCTGTTTGAGACCTCGAGGACTCCAACCCCAAATACCGTATAAGGGACCGAAGCAGCGTTCCCATAAAAAACTTATGTCCTCAGGAAGCTTTTCGAGAGAGCAAGATGGCTTTTACCGACCAGGGAGAAAATACAGCGAATATGTGGGGGATGGGAGGGCATGTGAATCCTATGACGGTGGTTCTATCTATTCACCAACAGGGTACTCTCCCAGGTTCTCTGTGAAAACAGAATCCCCTCGCGCATTTGATGGTTTGGAAAGATGTTCTACACCAAGGTTTTTGAGAACCAACAGTGTCAAAAGGACTGCAAGCTTTGCATTCTCTGAGGATCACCAGCCATCACCTTCCTTCCGTCATCAGAGAGTGAAGCGAGGCGCGCCTGATCACTGGAACGCGGTCATCCACGAATGGCAGAGCTCAAAGCACCTGCTCCCGGGTGCGTCCCAGAGCCCCCGCGTCGACATAGAGGAGCTCAAGCAGCGAGATGCCTCCAGTGCAGCGCAGCATGCGGTGGCCATGGCCAAGCTCAAGAGAGAGAAGGCCCACCTGCTGATGCACAAGGCTGACCTTGCCCTCCACAAGGCCACAGTTGCTCTCATGATGGCCGACGCGATCAAGGCGTCCAGCAGGGACTCTTCCCGGGATGGGAGGAGAGATTTCAGGGACGACTGACGACAACGCTTTTTCCGGCTTGAGCCGATGCAAGACTACCCATCTTTTTTGTTGATAGAAAGGAGCTCATCTGCTCCATCCGACCAAGTCAGTAGATAGCATCTTGCCCCCCTTTTTTCTCTCTTTTTTCTTCATCATTTGTACATATGTTGATTTCTCCTTTTCTTTTTCCCCCCTCTTATTTAGACCTCTGGGTTAACGTATTGTTGGGGGAAATGGGCCAAAATGATAGGCAGCTGTTGGTGCAGCCCGGCATTTTCTGCATAACGATGATATATCCATGTCTTCTCATTGTTGTGACGTTTGAGAGCTGGTCCTGGGAGAAAGATGGTGACAGTTTCTCTGCTGCAAAAAAAAAAAAAAGAGAGAGAGAGAGAGAGAGAGAGAAAAGTGGTACATAATGAGCCTGACAATTGGGTCCCAATGTGTCACCCATAGTCGTGTGTGTAGCTGTGTTGTTTTAATGTTTCAACTGTACATAGAGATTGTGCTACAGGTAAAAATAGTGTGATGCAGATGTTGGCACGCACACTACATACACACCACACATGCATTAGCCTTGGTAAAATTGGTATTTGGTTTGAAAAAA]

[+] EMBL AK105394             [TCAAAAGCAGTCTATGCTGTGCTCTGATGATAGACCTGGTGGTTCACCTGCAAATGCGGGTGAGGAGATCCCTGAAGACAGGACTACGCTTAAAGATAGCAGGTTTCGCTTTGTTTACTCAAGGAAGCGATCTTGCAGGAGAAAGAATGGATTTCTCAACACTTCAGAACAAGATTCTGATCTTAAATACAGAAAAGTTACAGGTGCGTTGTTTGCTTCAGTTGCTGGCTGGGGGTCTGTTACTGAAAATGTTACTTCGAGAAGACATGGCATATTAGTACTGAGCCAGCCATTAAAATCTATTTATAAGATCATGTCTGAAGCATGCCATGTCTGGCTTCTCAATGCTCTTGTTCTCCTTCACCGTGGTGCAATGGTTTCCTTGTGGCCTGCCGTACATCTGGAGATACTTCTTGTTGATGATACTTTAGGATTGAAACACTTGCTTCTTGAGACTTCCTTAAGATCAGCTGTATCCTTATTCTGTTTACTTGTTGGATGTTTCAATTCGTATTCCAAGGCGAGTACACGCAATGAGTCAAAAATGCTATGCACCTCAGTCAGAGTTCGGATATCTGGTTTGCACGGTAGAAGCCAAGTTGTGTTTTTGATGTTCAGCTTCGTGGGGGTAAAGTACCCCAAATGGAAGCACCTGCAAGGACAGCTGCAGCATCACCATATAAAAAGGGGGCTATCTAAAGTTAATTGCGCATGTGCTGACATAAAGCAACTTACAAATGGAACTGATCAAAGAGTCTGTACTTCAACAGAACACTTCTCTAAGGGTCTATCACTCGATGCTCAGGACTCTCTGTTTTTCACAGAATCAAAATATTCAAATGTCGACCCTATCATTTTTTGTCTTGATGAGCGAAGTAAATCTGTTCAAAATCATCTGGATGTGGCAGCTGCACCTTCACTGTTGTTTTTTCACCACTTAAAATTGCGCAGTGAAAGCAACTTGACTTCTAAAAGTCTTCCGGAATTCATGCCGATTACTTTAGAAGAGGATCAGCAGTCTCTGCCACAGCACACATCTGATCTGGTTCATCTGGCTGCTTCTGCTTCTGAAGTTTGTTCTGTTTATGTTAGTCCATCTAATACTGGTTCCTTGGATATGGGTACCGCTGGTTGCATCAATCATTCTGGTTCTGCTAGCAGCAAGCTCAATACTGCTAAAAGGACTGTAAGTCTGGATTGTAATAGCAGAGGTATTGGTGGTGCCAACATAACAAGCAGGAGTTTTCCAGATCAAATTATGGATGGAAGCCTTTCTGCTGTTTGCCCTCCTCAGAAGTATCAAAAGAGGTGTTCTTCTATATCTATTCCTGGAGATAATATATCAGATCCACCAGATGATAAGCTACTTAACAAAGAAGAAAAGGCCATGCAGCCTACATCTGACTTGGTCCAGGAACTGAATGAGTATCCTATTGGTCGTGTTACACCAACTGCCCCCAGGACTCCCTACCATCGGAACCGATTTACATCCCTATCACGCACTTTTGGTGATGGTTCAAAATTATGGCAAGAAGATATTATGGTGACAGGCTTTGCTGGTGGCTCTAAGAAGCCAAGGACTCAGGTTTTGTACTCGGTTTCTCCTAGAAGTGATGAACCTGGCTCAAAACACAAAGGACATTTCCGCAAGATACAGTCTCATAGCAGTGCAAAGAGACTTCCTGATAATTCAAGAAGTGAACAGAGCAGTCCTGAGTCATTGGCTTGTGTTGCAAATGTCCTAGTTACAGTTGGTGATAGAGGATGGAGGGAGTACGATACTCAGATCACAATTGACTCTGATGGGCAGAGTGAACGGAGGATTTGTGTGAAGCTTGCAGAAGGAACTAAGTATGCTCACAAAGTTCTTCAAGTTTTGCAGCCTGGGGCGACAAACCGCTATACACATGCAATGATATGGAAAGGGGGGACAGAGTGGTGCTTAGAATTTCCTGACAGAAGTCAGTGGTTGATTTTCAAGCAAATGCATGATGAATGTTATAGTCATAACATTAGAGCTGCATCTGTTAAGAATATTCCAATTCCTGGTGTCTGCTTTGCTGAAGCTCATGATGATCATGATGCTGTATCCTTTGTACGCTCTCAAGATTATATTGGTCATATTGGAACAGATGTTGAAATGGCACTTGATGAATCTCGTGTGATATATGACATGGACAGTGATGATGAAGTGTGGGTTTCAAGATGGAGGAAACTAGGCAAGGACAGCACCTCTGTGACAGATGACTTGTTTGAGAGGATCATGGACAAATTCGAGAAACTTGCTTATAGCCACAACTGCAATGAACTCACTATTGATCAGATGAAGGAACTAGATAGTGATAACATACCACTGGACACCATTAAAGTGATACATGATTATTGGCAGGACAAGAGGAAGAAAAAGGGAATGCCACTCATTCGACACTTTCAGTCCGCTATGTGGAAGATCCACGAGCAGCAGCTACAGGAATGGGAATCAACAGCACTCAGAATACAGGGTTCATCAAATGGTTACCAAGTTAAGTTGCCTCCAAAACCTGCCTTGTTCGCCTTCTGTTTGAGACCTCGAGGACTCCAACCCCAAATACCGTATAAGGGACCGAAGCAGCGTTCCCATAAAAAACTTATGTCCTCAGGAAGCTTTTCGAGAGAGCAAGATGGCTTTTACCGACCAGGGAGAAAATACAGCGAATATGTGGGGGATGGGAGGGCATGTGAATCCTATGACGGTGGTTCTATCTATTCACCAACAGGGTACTCTCCCAGGTTCTCTGTGAAAACAGAATCCCCTCGCGCATTTGATGGTTTGGAAAGATGTTCTACACCAAGGTTTTTGAGAACCAACAGTGTCAAAAGGACTGCAAGCTTTGCATTCTCTGAGGATCACCAGCCATCACCTTCCTTCCGTCATCAGAGAGTGAAGCGAGGCGCGCCTGATCACTGGAACGCGGTCATCCACGAATGGCAGAGCTCAAAGCACCTGCTCCCGGGTGCGTCCCAGAGCCCCCGCGTCGACATAGAGGAGCTCAAGCAGCGAGATGCCTCCAGTGCAGCGCAGCATGCGGTGGCCATGGCCAAGCTCAAGAGAGAGAAGGCCCACCTGCTGATGCACAAGGCTGACCTTGCCCTCCACAAGGCCACAGTTGCTCTCATGATGGCCGACGCGATCAAGGCGTCCAGCAGGGACTCTTCCCGGGATGGGAGGAGAGATTTCAGGGACGACTGACGACAACGCTTTTTCCGGCTTGAGCCGATGCAAGACTACCCATCTTTTTTGTTGATAGAAAGGAGCTCATCTGCTCCATCCGACCAAGTCAGTAGATAGCATCTTGCCCCCCTTTTTTCTCTCTTTTTTCTTCATCATTTGTACATATGTTGATTTCTCCTTTTCTTTTTCCCCCCTCTTATTTAGACCTCTGGGTTAACGTATTGTTGGGGGAAATGGGCCAAAATGATAGGCAGCTGTTGGTGCAGCCCGGCATTTTCTGCATAACGATGATATATCCATGTCTTCTCATTG                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CB000257             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CCCGGGATGGGAGGAGAGATTTCAGGGACGACCGCTGACAACGCTTTTTCCGGCTTGAGCCGATGCAAGACTACCCATCTTTTTTGTTGATAGAAAGGAGCTCATCTGCTCCATCCGACCAAGTCAGTAGATAGCATCTTGCCCCCCTTTTTTCTCTCTTTTTTCTTCATCATTTGTACATATGTTGATTTCTCCTTTTCTTTTTCCCCCCTCTTATTTAGACCTCTGGGTTAACGTATTGTTGGGGGAAATGGGCCAAAATGATAGGCAGCTGTTGGTGCAGCCCGGCATTTTCTGCATAACGATGATATATCCATGTCTTCTCATTGTTGTGACGTTTGAGAGCTGGTCCTGGGAGAAAGATGGTGACAGTTTCTCTGCTGCAAAAAAAAAAAAAAGAGAGAGAGAGAGAGAGAGAGAGAAAAGTGGTACATAATGAGCCTGACAATTGGGTCCCAATGTGTCACCCATAGTCGTGTGTGTAGCTGTGTTGTTTTAATGTTTCAACTGTACATAGAGATTGTGCTACAGGTAAAAATAGTGTGATGCAGATGTTGGCACGCACACTACATACACACCACACATGCATTAGCCTTGGTAAAATTGGTATTTGGTTTGAAAAAA]


>consensus_4402#0 TCAAAAGCAGTCTATGCTGTGCTCTGATGATAGACCTGGTGGTTCACCTGCAAATGCGGG TGAGGAGATCCCTGAAGACAGGACTACGCTTAAAGATAGCAGGTTTCGCTTTGTTTACTC AAGGAAGCGATCTTGCAGGAGAAAGAATGGATTTCTCAACACTTCAGAACAAGATTCTGA TCTTAAATACAGAAAAGTTACAGGTGCGTTGTTTGCTTCAGTTGCTGGCTGGGGGTCTGT TACTGAAAATGTTACTTCGAGAAGACATGGCATATTAGTACTGAGCCAGCCATTAAAATC TATTTATAAGATCATGTCTGAAGCATGCCATGTCTGGCTTCTCAATGCTCTTGTTCTCCT TCACCGTGGTGCAATGGTTTCCTTGTGGCCTGCCGTACATCTGGAGATACTTCTTGTTGA TGATACTTTAGGATTGAAACACTTGCTTCTTGAGACTTCCTTAAGATCAGCTGTATCCTT ATTCTGTTTACTTGTTGGATGTTTCAATTCGTATTCCAAGGCGAGTACACGCAATGAGTC AAAAATGCTATGCACCTCAGTCAGAGTTCGGATATCTGGTTTGCACGGTAGAAGCCAAGT TGTGTTTTTGATGTTCAGCTTCGTGGGGGTAAAGTACCCCAAATGGAAGCACCTGCAAGG ACAGCTGCAGCATCACCATATAAAAAGGGGGCTATCTAAAGTTAATTGCGCATGTGCTGA CATAAAGCAACTTACAAATGGAACTGATCAAAGAGTCTGTACTTCAACAGAACACTTCTC TAAGGGTCTATCACTCGATGCTCAGGACTCTCTGTTTTTCACAGAATCAAAATATTCAAA TGTCGACCCTATCATTTTTTGTCTTGATGAGCGAAGTAAATCTGTTCAAAATCATCTGGA TGTGGCAGCTGCACCTTCACTGTTGTTTTTTCACCACTTAAAATTGCGCAGTGAAAGCAA CTTGACTTCTAAAAGTCTTCCGGAATTCATGCCGATTACTTTAGAAGAGGATCAGCAGTC TCTGCCACAGCACACATCTGATCTGGTTCATCTGGCTGCTTCTGCTTCTGAAGTTTGTTC TGTTTATGTTAGTCCATCTAATACTGGTTCCTTGGATATGGGTACCGCTGGTTGCATCAA TCATTCTGGTTCTGCTAGCAGCAAGCTCAATACTGCTAAAAGGACTGTAAGTCTGGATTG TAATAGCAGAGGTATTGGTGGTGCCAACATAACAAGCAGGAGTTTTCCAGATCAAATTAT GGATGGAAGCCTTTCTGCTGTTTGCCCTCCTCAGAAGTATCAAAAGAGGTGTTCTTCTAT ATCTATTCCTGGAGATAATATATCAGATCCACCAGATGATAAGCTACTTAACAAAGAAGA AAAGGCCATGCAGCCTACATCTGACTTGGTCCAGGAACTGAATGAGTATCCTATTGGTCG TGTTACACCAACTGCCCCCAGGACTCCCTACCATCGGAACCGATTTACATCCCTATCACG CACTTTTGGTGATGGTTCAAAATTATGGCAAGAAGATATTATGGTGACAGGCTTTGCTGG TGGCTCTAAGAAGCCAAGGACTCAGGTTTTGTACTCGGTTTCTCCTAGAAGTGATGAACC TGGCTCAAAACACAAAGGACATTTCCGCAAGATACAGTCTCATAGCAGTGCAAAGAGACT TCCTGATAATTCAAGAAGTGAACAGAGCAGTCCTGAGTCATTGGCTTGTGTTGCAAATGT CCTAGTTACAGTTGGTGATAGAGGATGGAGGGAGTACGATACTCAGATCACAATTGACTC TGATGGGCAGAGTGAACGGAGGATTTGTGTGAAGCTTGCAGAAGGAACTAAGTATGCTCA CAAAGTTCTTCAAGTTTTGCAGCCTGGGGCGACAAACCGCTATACACATGCAATGATATG GAAAGGGGGGACAGAGTGGTGCTTAGAATTTCCTGACAGAAGTCAGTGGTTGATTTTCAA GCAAATGCATGATGAATGTTATAGTCATAACATTAGAGCTGCATCTGTTAAGAATATTCC AATTCCTGGTGTCTGCTTTGCTGAAGCTCATGATGATCATGATGCTGTATCCTTTGTACG CTCTCAAGATTATATTGGTCATATTGGAACAGATGTTGAAATGGCACTTGATGAATCTCG TGTGATATATGACATGGACAGTGATGATGAAGTGTGGGTTTCAAGATGGAGGAAACTAGG CAAGGACAGCACCTCTGTGACAGATGACTTGTTTGAGAGGATCATGGACAAATTCGAGAA ACTTGCTTATAGCCACAACTGCAATGAACTCACTATTGATCAGATGAAGGAACTAGATAG TGATAACATACCACTGGACACCATTAAAGTGATACATGATTATTGGCAGGACAAGAGGAA GAAAAAGGGAATGCCACTCATTCGACACTTTCAGTCCGCTATGTGGAAGATCCACGAGCA GCAGCTACAGGAATGGGAATCAACAGCACTCAGAATACAGGGTTCATCAAATGGTTACCA AGTTAAGTTGCCTCCAAAACCTGCCTTGTTCGCCTTCTGTTTGAGACCTCGAGGACTCCA ACCCCAAATACCGTATAAGGGACCGAAGCAGCGTTCCCATAAAAAACTTATGTCCTCAGG AAGCTTTTCGAGAGAGCAAGATGGCTTTTACCGACCAGGGAGAAAATACAGCGAATATGT GGGGGATGGGAGGGCATGTGAATCCTATGACGGTGGTTCTATCTATTCACCAACAGGGTA CTCTCCCAGGTTCTCTGTGAAAACAGAATCCCCTCGCGCATTTGATGGTTTGGAAAGATG TTCTACACCAAGGTTTTTGAGAACCAACAGTGTCAAAAGGACTGCAAGCTTTGCATTCTC TGAGGATCACCAGCCATCACCTTCCTTCCGTCATCAGAGAGTGAAGCGAGGCGCGCCTGA TCACTGGAACGCGGTCATCCACGAATGGCAGAGCTCAAAGCACCTGCTCCCGGGTGCGTC CCAGAGCCCCCGCGTCGACATAGAGGAGCTCAAGCAGCGAGATGCCTCCAGTGCAGCGCA GCATGCGGTGGCCATGGCCAAGCTCAAGAGAGAGAAGGCCCACCTGCTGATGCACAAGGC TGACCTTGCCCTCCACAAGGCCACAGTTGCTCTCATGATGGCCGACGCGATCAAGGCGTC CAGCAGGGACTCTTCCCGGGATGGGAGGAGAGATTTCAGGGACGACTGACGACAACGCTT TTTCCGGCTTGAGCCGATGCAAGACTACCCATCTTTTTTGTTGATAGAAAGGAGCTCATC TGCTCCATCCGACCAAGTCAGTAGATAGCATCTTGCCCCCCTTTTTTCTCTCTTTTTTCT TCATCATTTGTACATATGTTGATTTCTCCTTTTCTTTTTCCCCCCTCTTATTTAGACCTC TGGGTTAACGTATTGTTGGGGGAAATGGGCCAAAATGATAGGCAGCTGTTGGTGCAGCCC GGCATTTTCTGCATAACGATGATATATCCATGTCTTCTCATTGTTGTGACGTTTGAGAGC TGGTCCTGGGAGAAAGATGGTGACAGTTTCTCTGCTGCAAAAAAAAAAAAAAGAGAGAGA GAGAGAGAGAGAGAGAAAAGTGGTACATAATGAGCCTGACAATTGGGTCCCAATGTGTCA CCCATAGTCGTGTGTGTAGCTGTGTTGTTTTAATGTTTCAACTGTACATAGAGATTGTGC TACAGGTAAAAATAGTGTGATGCAGATGTTGGCACGCACACTACATACACACCACACATG CATTAGCCTTGGTAAAATTGGTATTTGGTTTGAAAAAA



consensusID : consensus_4402#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 403
fasta sequence
                              [TATTTAGACCTCTGGGTTAACGTATTGTTGGGGGAAATGGGTCCAAATGATAGCCAGCTGTTGGTCGCAGCCCGGCATTTTCTGCATAACGATGATATACTCCATGTCTTCTCATTGTTGTGACGTTTGAGAGCTGGTCCTGGGAGAAAGATGGTGACAGTTTCTCTGCTGCAAAAAAAAAAGAGAGAGAGAGAGAAAAAAGTGGTACATAATGAGCCTGACATTTGGTCCCAATGTGTCACCCATAGTCGTGTGTGTAGCTGTGTTGTTTTAATGTTTCAACTGTACATAGAGATTGTGCTACAGGTAAAAATAGTGTGATGCAGATGTTGGCACGCACACTACATACACACCACACATGCATTAGCCTTGGTAAAATTGGTATTTGGTTTGAAAAAAAAAA]

[+] EMBL BI813409             [TATTTAGACCTCTGGGTTAACGTATTGTTGGGGGAAATGGGTCCAAATGATAGCCAGCTGTTGGTCGCAGCCCGGCATTTTCTGCATAACGATGATATACTCCATGTCTTCTCATTGTTGTGACGTTTGAGAGCTGGTCCTGGGAGAAAGATGGTGACAGTTTCTCTGCTGCAAAAAAAAAAGAGAGAGAGAGAGAAAAAAGTGGTACATAATGAGCCTGACATTTGGTCCCAATGTGTCACCCATAGTCGTGTGTGTAGCTGTGTTGTTTTAATGTTTCAACTGTACATAGAGATTGTGCTACAGGTAAAAATAGTGTGATGCAGATGTTGGCACGCACACTACATACACACCACACATGCATTAGCCTTGGTAAAATTGGTATTTGGTTTGAAAAAAAAAA]


>consensus_4402#1 TATTTAGACCTCTGGGTTAACGTATTGTTGGGGGAAATGGGTCCAAATGATAGCCAGCTG TTGGTCGCAGCCCGGCATTTTCTGCATAACGATGATATACTCCATGTCTTCTCATTGTTG TGACGTTTGAGAGCTGGTCCTGGGAGAAAGATGGTGACAGTTTCTCTGCTGCAAAAAAAA AAGAGAGAGAGAGAGAAAAAAGTGGTACATAATGAGCCTGACATTTGGTCCCAATGTGTC ACCCATAGTCGTGTGTGTAGCTGTGTTGTTTTAATGTTTCAACTGTACATAGAGATTGTG CTACAGGTAAAAATAGTGTGATGCAGATGTTGGCACGCACACTACATACACACCACACAT GCATTAGCCTTGGTAAAATTGGTATTTGGTTTGAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4402#0      TCAAAAGCAGTCTATGCTGTGCTCTGATGATAGACCTGGTGGTTCACCTGCAAATGCGGG 60
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      TGAGGAGATCCCTGAAGACAGGACTACGCTTAAAGATAGCAGGTTTCGCTTTGTTTACTC 120
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      AAGGAAGCGATCTTGCAGGAGAAAGAATGGATTTCTCAACACTTCAGAACAAGATTCTGA 180
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      TCTTAAATACAGAAAAGTTACAGGTGCGTTGTTTGCTTCAGTTGCTGGCTGGGGGTCTGT 240
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      TACTGAAAATGTTACTTCGAGAAGACATGGCATATTAGTACTGAGCCAGCCATTAAAATC 300
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      TATTTATAAGATCATGTCTGAAGCATGCCATGTCTGGCTTCTCAATGCTCTTGTTCTCCT 360
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      TCACCGTGGTGCAATGGTTTCCTTGTGGCCTGCCGTACATCTGGAGATACTTCTTGTTGA 420
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      TGATACTTTAGGATTGAAACACTTGCTTCTTGAGACTTCCTTAAGATCAGCTGTATCCTT 480
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      ATTCTGTTTACTTGTTGGATGTTTCAATTCGTATTCCAAGGCGAGTACACGCAATGAGTC 540
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      AAAAATGCTATGCACCTCAGTCAGAGTTCGGATATCTGGTTTGCACGGTAGAAGCCAAGT 600
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      TGTGTTTTTGATGTTCAGCTTCGTGGGGGTAAAGTACCCCAAATGGAAGCACCTGCAAGG 660
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      ACAGCTGCAGCATCACCATATAAAAAGGGGGCTATCTAAAGTTAATTGCGCATGTGCTGA 720
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      CATAAAGCAACTTACAAATGGAACTGATCAAAGAGTCTGTACTTCAACAGAACACTTCTC 780
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      TAAGGGTCTATCACTCGATGCTCAGGACTCTCTGTTTTTCACAGAATCAAAATATTCAAA 840
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      TGTCGACCCTATCATTTTTTGTCTTGATGAGCGAAGTAAATCTGTTCAAAATCATCTGGA 900
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      TGTGGCAGCTGCACCTTCACTGTTGTTTTTTCACCACTTAAAATTGCGCAGTGAAAGCAA 960
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      CTTGACTTCTAAAAGTCTTCCGGAATTCATGCCGATTACTTTAGAAGAGGATCAGCAGTC 1020
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      TCTGCCACAGCACACATCTGATCTGGTTCATCTGGCTGCTTCTGCTTCTGAAGTTTGTTC 1080
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      TGTTTATGTTAGTCCATCTAATACTGGTTCCTTGGATATGGGTACCGCTGGTTGCATCAA 1140
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      TCATTCTGGTTCTGCTAGCAGCAAGCTCAATACTGCTAAAAGGACTGTAAGTCTGGATTG 1200
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      TAATAGCAGAGGTATTGGTGGTGCCAACATAACAAGCAGGAGTTTTCCAGATCAAATTAT 1260
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      GGATGGAAGCCTTTCTGCTGTTTGCCCTCCTCAGAAGTATCAAAAGAGGTGTTCTTCTAT 1320
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      ATCTATTCCTGGAGATAATATATCAGATCCACCAGATGATAAGCTACTTAACAAAGAAGA 1380
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      AAAGGCCATGCAGCCTACATCTGACTTGGTCCAGGAACTGAATGAGTATCCTATTGGTCG 1440
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      TGTTACACCAACTGCCCCCAGGACTCCCTACCATCGGAACCGATTTACATCCCTATCACG 1500
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      CACTTTTGGTGATGGTTCAAAATTATGGCAAGAAGATATTATGGTGACAGGCTTTGCTGG 1560
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      TGGCTCTAAGAAGCCAAGGACTCAGGTTTTGTACTCGGTTTCTCCTAGAAGTGATGAACC 1620
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      TGGCTCAAAACACAAAGGACATTTCCGCAAGATACAGTCTCATAGCAGTGCAAAGAGACT 1680
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      TCCTGATAATTCAAGAAGTGAACAGAGCAGTCCTGAGTCATTGGCTTGTGTTGCAAATGT 1740
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      CCTAGTTACAGTTGGTGATAGAGGATGGAGGGAGTACGATACTCAGATCACAATTGACTC 1800
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      TGATGGGCAGAGTGAACGGAGGATTTGTGTGAAGCTTGCAGAAGGAACTAAGTATGCTCA 1860
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      CAAAGTTCTTCAAGTTTTGCAGCCTGGGGCGACAAACCGCTATACACATGCAATGATATG 1920
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      GAAAGGGGGGACAGAGTGGTGCTTAGAATTTCCTGACAGAAGTCAGTGGTTGATTTTCAA 1980
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      GCAAATGCATGATGAATGTTATAGTCATAACATTAGAGCTGCATCTGTTAAGAATATTCC 2040
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      AATTCCTGGTGTCTGCTTTGCTGAAGCTCATGATGATCATGATGCTGTATCCTTTGTACG 2100
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      CTCTCAAGATTATATTGGTCATATTGGAACAGATGTTGAAATGGCACTTGATGAATCTCG 2160
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      TGTGATATATGACATGGACAGTGATGATGAAGTGTGGGTTTCAAGATGGAGGAAACTAGG 2220
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      CAAGGACAGCACCTCTGTGACAGATGACTTGTTTGAGAGGATCATGGACAAATTCGAGAA 2280
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      ACTTGCTTATAGCCACAACTGCAATGAACTCACTATTGATCAGATGAAGGAACTAGATAG 2340
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      TGATAACATACCACTGGACACCATTAAAGTGATACATGATTATTGGCAGGACAAGAGGAA 2400
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      GAAAAAGGGAATGCCACTCATTCGACACTTTCAGTCCGCTATGTGGAAGATCCACGAGCA 2460
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      GCAGCTACAGGAATGGGAATCAACAGCACTCAGAATACAGGGTTCATCAAATGGTTACCA 2520
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      AGTTAAGTTGCCTCCAAAACCTGCCTTGTTCGCCTTCTGTTTGAGACCTCGAGGACTCCA 2580
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      ACCCCAAATACCGTATAAGGGACCGAAGCAGCGTTCCCATAAAAAACTTATGTCCTCAGG 2640
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      AAGCTTTTCGAGAGAGCAAGATGGCTTTTACCGACCAGGGAGAAAATACAGCGAATATGT 2700
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      GGGGGATGGGAGGGCATGTGAATCCTATGACGGTGGTTCTATCTATTCACCAACAGGGTA 2760
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      CTCTCCCAGGTTCTCTGTGAAAACAGAATCCCCTCGCGCATTTGATGGTTTGGAAAGATG 2820
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      TTCTACACCAAGGTTTTTGAGAACCAACAGTGTCAAAAGGACTGCAAGCTTTGCATTCTC 2880
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      TGAGGATCACCAGCCATCACCTTCCTTCCGTCATCAGAGAGTGAAGCGAGGCGCGCCTGA 2940
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      TCACTGGAACGCGGTCATCCACGAATGGCAGAGCTCAAAGCACCTGCTCCCGGGTGCGTC 3000
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      CCAGAGCCCCCGCGTCGACATAGAGGAGCTCAAGCAGCGAGATGCCTCCAGTGCAGCGCA 3060
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      GCATGCGGTGGCCATGGCCAAGCTCAAGAGAGAGAAGGCCCACCTGCTGATGCACAAGGC 3120
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      TGACCTTGCCCTCCACAAGGCCACAGTTGCTCTCATGATGGCCGACGCGATCAAGGCGTC 3180
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      CAGCAGGGACTCTTCCCGGGATGGGAGGAGAGATTTCAGGGACGACTGACGACAACGCTT 3240
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      TTTCCGGCTTGAGCCGATGCAAGACTACCCATCTTTTTTGTTGATAGAAAGGAGCTCATC 3300
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      TGCTCCATCCGACCAAGTCAGTAGATAGCATCTTGCCCCCCTTTTTTCTCTCTTTTTTCT 3360
consensus_4402#1      ------------------------------------------------------------
                                                                                  

consensus_4402#0      TCATCATTTGTACATATGTTGATTTCTCCTTTTCTTTTTCCCCCCTCTTATTTAGACCTC 3420
consensus_4402#1      ------------------------------------------------TATTTAGACCTC 12
                                                                      ************

consensus_4402#0      TGGGTTAACGTATTGTTGGGGGAAATGGGCCAAAATGATAGGCAGCTGTTGGT-GCAGCC 3479
consensus_4402#1      TGGGTTAACGTATTGTTGGGGGAAATGGGTCCAAATGATAGCCAGCTGTTGGTCGCAGCC 72
                      ***************************** * ********* *********** ******

consensus_4402#0      CGGCATTTTCTGCATAACGATGATATA-TCCATGTCTTCTCATTGTTGTGACGTTTGAGA 3538
consensus_4402#1      CGGCATTTTCTGCATAACGATGATATACTCCATGTCTTCTCATTGTTGTGACGTTTGAGA 132
                      *************************** ********************************

consensus_4402#0      GCTGGTCCTGGGAGAAAGATGGTGACAGTTTCTCTGCTGCAAAAAAAAAAAAAAGAGAGA 3598
consensus_4402#1      GCTGGTCCTGGGAGAAAGATGGTGACAGTTTCTCTGCTGCAAAAAAAAAA---------- 182
                      **************************************************          

consensus_4402#0      GAGAGAGAGAGAGAGAGAAAAGTGGTACATAATGAGCCTGACAATTGGGTCCCAATGTGT 3658
consensus_4402#1      --GAGAGAGAGAGAGAAAAAAGTGGTACATAATGAGCCTGACATTTGG-TCCCAATGTGT 239
                        ************** ************************** **** ***********

consensus_4402#0      CACCCATAGTCGTGTGTGTAGCTGTGTTGTTTTAATGTTTCAACTGTACATAGAGATTGT 3718
consensus_4402#1      CACCCATAGTCGTGTGTGTAGCTGTGTTGTTTTAATGTTTCAACTGTACATAGAGATTGT 299
                      ************************************************************

consensus_4402#0      GCTACAGGTAAAAATAGTGTGATGCAGATGTTGGCACGCACACTACATACACACCACACA 3778
consensus_4402#1      GCTACAGGTAAAAATAGTGTGATGCAGATGTTGGCACGCACACTACATACACACCACACA 359
                      ************************************************************

consensus_4402#0      TGCATTAGCCTTGGTAAAATTGGTATTTGGTTTGAAAAAA---- 3818
consensus_4402#1      TGCATTAGCCTTGGTAAAATTGGTATTTGGTTTGAAAAAAAAAA 403
                      ****************************************    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)