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Oryza sativa
cluster # 4404 cluster # 4404       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4404#0 length = 1486 sequences # 1  
consensus_4404#1 length = 556 sequences # 2  

consensusID : consensus_4404#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1486
fasta sequence
                              [TAGTAGCAATAGAGCATCAACATAGGAGGCAGCATACCAATGGAGAGCTTGTGTGGGCAGCTTGAGCATGAACATGAGCAGCAGCTGCACCAATCCTCCTCATCTTCACTTCTCCCCTACTGCTTCCTTTCTGCTCCAGAGCCTCTTCCTGTCCCAGGCTTCCCTGCCGGCTGCAGCAACCTTGAAGAGAAGGCAGCAGCAGCCATGGCGGCCTATGAGTATGAGAGCAGCAGCTGCAGCTCCCTTGACCCCACCTCAATGCCAATGGTGTACTCACCAATAGTGCTGCAGCCACAGGAGTGCCCTCTTTCCTTTGTCTTTGACAATGCCGCTGCCGCTGCCGGCGACAACAAATGGGTGCCTGGCATTCAAGGAAGTTGCCCTTGTTCATTGGGCTCAACTCAAGATATGGATGCAAGTTGGGGCAAGAGTAGAAAGCACAAGAGGAGCAATGTGGGCTTGAAGGGACTTGAGGAGAAAAAGGCAAGAAGGGTGGTACTACATCAACATGATGATGATGTGAAGAAGAAGGCCAAGGAGGCAGCAGGTGGGGAGCCACCAGCTGGGTACATTCATGTGAGGGCAAGGAGAGGCCAAGCAACAGACAGCCACAGCCTTGCTGAGAGGGTGAGAAGGGAGAAGATCAGTGAGAGGATGAAGATGCTGCAAAGCCTGGTTCCTGGTTGTGACAAGGTCACAGGGAAAGCCCTCATGCTAGATGAGATCATCAGCTATGTGCAATCTCTGCAGAACCAAGTTGAGTTTCTGTCCATGAAGCTTGCCTCCCTTAGCCCTTTGATGTATGAGTTTGGACCGGGCATTGATATGCACCCAGATGTTCTTCGACAGCTTGCAAAGATGCCACATGAGATGGTGCAGTGCATGGGCCAAATGGGGAGTACAGGCATTTCACTCCAAGGACTAGGAGGAGGACCCACAGGCTTTGCTCAGGATGGCAGCAGCCACATTAACATGGTGGTGATGCAAGTTGGAGAGCAAGGCCAGCAGCAGGGCTCTCTTCACCAGGTCGAGATGAGCAGCCACTGCTTCTTTCATTAGTAGTAGAACCCATGCATATTCTGGAATGGCCACGAAGCAGCATCACATAGAGGAGGAGATGCCGAATCAACAAGTGAAGTGAAGTGAGCAAGCTGAAGAAGAAGAGTGGGGCAAGCCGACAGAGTTGAACCTCCTGAAGATCTCGCAAGGATCCTTTGGTTGCTGGCTCAGCTGTACCATCTCCTCCTGGGCTCCAAAATCCACACTATCGATATCTCTGCCTTCACCGTCACCAAGACTGCATGCAGACAGTACCAAGACGAGGACATGTACTGTTGCTCCTCCTGCGTTTCGCTTCATTCATTCATCTGCTGCTGTGCTGTTCCTCCCCCTCTTCTGTGTGTTGCATCTGTAGATACTCTACTCCCTTTTCATGTGTTTAATACTCCAGAAATGTGCATGTGTGTGTGTGCAATATGCATGCCTT]

[+] EMBL AK065864             [TAGTAGCAATAGAGCATCAACATAGGAGGCAGCATACCAATGGAGAGCTTGTGTGGGCAGCTTGAGCATGAACATGAGCAGCAGCTGCACCAATCCTCCTCATCTTCACTTCTCCCCTACTGCTTCCTTTCTGCTCCAGAGCCTCTTCCTGTCCCAGGCTTCCCTGCCGGCTGCAGCAACCTTGAAGAGAAGGCAGCAGCAGCCATGGCGGCCTATGAGTATGAGAGCAGCAGCTGCAGCTCCCTTGACCCCACCTCAATGCCAATGGTGTACTCACCAATAGTGCTGCAGCCACAGGAGTGCCCTCTTTCCTTTGTCTTTGACAATGCCGCTGCCGCTGCCGGCGACAACAAATGGGTGCCTGGCATTCAAGGAAGTTGCCCTTGTTCATTGGGCTCAACTCAAGATATGGATGCAAGTTGGGGCAAGAGTAGAAAGCACAAGAGGAGCAATGTGGGCTTGAAGGGACTTGAGGAGAAAAAGGCAAGAAGGGTGGTACTACATCAACATGATGATGATGTGAAGAAGAAGGCCAAGGAGGCAGCAGGTGGGGAGCCACCAGCTGGGTACATTCATGTGAGGGCAAGGAGAGGCCAAGCAACAGACAGCCACAGCCTTGCTGAGAGGGTGAGAAGGGAGAAGATCAGTGAGAGGATGAAGATGCTGCAAAGCCTGGTTCCTGGTTGTGACAAGGTCACAGGGAAAGCCCTCATGCTAGATGAGATCATCAGCTATGTGCAATCTCTGCAGAACCAAGTTGAGTTTCTGTCCATGAAGCTTGCCTCCCTTAGCCCTTTGATGTATGAGTTTGGACCGGGCATTGATATGCACCCAGATGTTCTTCGACAGCTTGCAAAGATGCCACATGAGATGGTGCAGTGCATGGGCCAAATGGGGAGTACAGGCATTTCACTCCAAGGACTAGGAGGAGGACCCACAGGCTTTGCTCAGGATGGCAGCAGCCACATTAACATGGTGGTGATGCAAGTTGGAGAGCAAGGCCAGCAGCAGGGCTCTCTTCACCAGGTCGAGATGAGCAGCCACTGCTTCTTTCATTAGTAGTAGAACCCATGCATATTCTGGAATGGCCACGAAGCAGCATCACATAGAGGAGGAGATGCCGAATCAACAAGTGAAGTGAAGTGAGCAAGCTGAAGAAGAAGAGTGGGGCAAGCCGACAGAGTTGAACCTCCTGAAGATCTCGCAAGGATCCTTTGGTTGCTGGCTCAGCTGTACCATCTCCTCCTGGGCTCCAAAATCCACACTATCGATATCTCTGCCTTCACCGTCACCAAGACTGCATGCAGACAGTACCAAGACGAGGACATGTACTGTTGCTCCTCCTGCGTTTCGCTTCATTCATTCATCTGCTGCTGTGCTGTTCCTCCCCCTCTTCTGTGTGTTGCATCTGTAGATACTCTACTCCCTTTTCATGTGTTTAATACTCCAGAAATGTGCATGTGTGTGTGTGCAATATGCATGCCTT]


>consensus_4404#0 TAGTAGCAATAGAGCATCAACATAGGAGGCAGCATACCAATGGAGAGCTTGTGTGGGCAG CTTGAGCATGAACATGAGCAGCAGCTGCACCAATCCTCCTCATCTTCACTTCTCCCCTAC TGCTTCCTTTCTGCTCCAGAGCCTCTTCCTGTCCCAGGCTTCCCTGCCGGCTGCAGCAAC CTTGAAGAGAAGGCAGCAGCAGCCATGGCGGCCTATGAGTATGAGAGCAGCAGCTGCAGC TCCCTTGACCCCACCTCAATGCCAATGGTGTACTCACCAATAGTGCTGCAGCCACAGGAG TGCCCTCTTTCCTTTGTCTTTGACAATGCCGCTGCCGCTGCCGGCGACAACAAATGGGTG CCTGGCATTCAAGGAAGTTGCCCTTGTTCATTGGGCTCAACTCAAGATATGGATGCAAGT TGGGGCAAGAGTAGAAAGCACAAGAGGAGCAATGTGGGCTTGAAGGGACTTGAGGAGAAA AAGGCAAGAAGGGTGGTACTACATCAACATGATGATGATGTGAAGAAGAAGGCCAAGGAG GCAGCAGGTGGGGAGCCACCAGCTGGGTACATTCATGTGAGGGCAAGGAGAGGCCAAGCA ACAGACAGCCACAGCCTTGCTGAGAGGGTGAGAAGGGAGAAGATCAGTGAGAGGATGAAG ATGCTGCAAAGCCTGGTTCCTGGTTGTGACAAGGTCACAGGGAAAGCCCTCATGCTAGAT GAGATCATCAGCTATGTGCAATCTCTGCAGAACCAAGTTGAGTTTCTGTCCATGAAGCTT GCCTCCCTTAGCCCTTTGATGTATGAGTTTGGACCGGGCATTGATATGCACCCAGATGTT CTTCGACAGCTTGCAAAGATGCCACATGAGATGGTGCAGTGCATGGGCCAAATGGGGAGT ACAGGCATTTCACTCCAAGGACTAGGAGGAGGACCCACAGGCTTTGCTCAGGATGGCAGC AGCCACATTAACATGGTGGTGATGCAAGTTGGAGAGCAAGGCCAGCAGCAGGGCTCTCTT CACCAGGTCGAGATGAGCAGCCACTGCTTCTTTCATTAGTAGTAGAACCCATGCATATTC TGGAATGGCCACGAAGCAGCATCACATAGAGGAGGAGATGCCGAATCAACAAGTGAAGTG AAGTGAGCAAGCTGAAGAAGAAGAGTGGGGCAAGCCGACAGAGTTGAACCTCCTGAAGAT CTCGCAAGGATCCTTTGGTTGCTGGCTCAGCTGTACCATCTCCTCCTGGGCTCCAAAATC CACACTATCGATATCTCTGCCTTCACCGTCACCAAGACTGCATGCAGACAGTACCAAGAC GAGGACATGTACTGTTGCTCCTCCTGCGTTTCGCTTCATTCATTCATCTGCTGCTGTGCT GTTCCTCCCCCTCTTCTGTGTGTTGCATCTGTAGATACTCTACTCCCTTTTCATGTGTTT AATACTCCAGAAATGTGCATGTGTGTGTGTGCAATATGCATGCCTT



consensusID : consensus_4404#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 556
fasta sequence
                              [TGTTCTTTGCAAATGGTGACTGATGATGTGTTAACTGTTGCATTTACCAGAC---TGCAGCTATCTAGTAACATTTGTACAAACTAGGAATGGCCACGAAGCAGCATCACATAGAGGAGGAGATGCCGAATCAACAAGTGAAGTGAAGTGAGCAAGCTGAAGAAGAAGAGTGGGGCAAGCCGACAGAGTTGAACCTCCTGAAGATCTCGCAAGGATCCTTTGGTTGCTGGCTCAGCTGTACCATCTCCTCCTGGGCTCCAAAATCCACACTATCGATATCTCTGCCTTCACCGTCACCAAGACTGCATGCAGACAGTACCAAGACGAGGACATGTACTGTTGCTCCTCCTGCGTTTCGCTTCATTCATTCATCTGCTGCTGTGCTGTTCCTCCCCCTCTTCTGTGTGTTGCATCTGTAGATACTCTACTCCCTTTTCATGTGTTTAATACTCCAGAAATGTGCA--TGTGTGTGTGTGCAATATGCATGCCTTGNCAATGTGTACTTGATGCTGCCAGCCTGATCGATATGACTTGGCCTCCTGCCTCCAAAAAAAAAAAA]

[+] EMBL CA753763             [TGTTCTTTGCAAATGGTGACTGATGATGTGTTAACTGTTGCATTTACCAGAC   TGCAGCTATCTAGTAACATTTGTACAAACTAGGAATGGCCACGAAGCAGCATCACATAGAGGAGGAGATGCCGAATCAACAAGTGAAGTGAAGTGAGCAAGCTGAAGAAGAAGAGTGGGGCAAGCCGACAGAGTTGAACCTCCTGAAGATCTCGCAAGGATCCTTTGGTTGCTGGCTCAGCTGTACCATCTCCTCCTGGGCTCCAAAATCCACACTATCGATATCTCTGCCTTCACCGTCACCAAGACTGCATGCAGACAGTACCAAGACGAGGACATGTACTGTTGCTCCTCCTGCGTTTCGCTTCATTCATTCATCTGCTGCTGTGCTGTTCCTCCCCCTCTTCTGTGTGTTGCATCTGTAGATACTCTACTCCCTTTTCATGTGTTTAATACTCCAGAAATGTGCA  TGTGTGTGTGTGCAATATGCATGCCTTGNCAATGTGTACTTGATGCTGCCAGCCTGATCGATATGACTTGGCCTCCTGCCTCCAAAAAAAAAAAA]
[+] EMBL CA766753             [                                  CTGTTGCATTTGCCAGACTAATGCAGCTATCTAGTAACATTTGTACAAACTAGGAATGGCCACGAAGCAGCATCACATAGAGGAGGAGATGCCGAATCAACAAGTGAAGTGAAGTGAGCAAGCTGAAGAAGAAGAGTGGGGCAAGCCGACAGAGTTGAACCTCCTGAAGATCTCGCAAGGATCCTTTGGTTGCTGGCTCAGCTGTACCATCTCCTCCTGGGCTCCAAAATCCACACTATCGATATCTCTGCCTTCACCGTCACCAAGACTGCATGCAGACAGTACCAAGACGAGGACATGTACTGTTGCTCCTCCTGCGTTTCGCTTCATTCATTCATCTGCTGCTGTGCTGTTCCTCCCCCTCTTCTGTGTGTTGCATCTGTAGATACTCTACTCCCTTTTCATGTGTTTAATACTCCAGAAATGTGCATGTGTGTGTGTGTGCAATATGCATGCCTTGCAAATGTGTACTTGATGCTGCCAGCCTGATCGATATGACTTGGCCTC                    ]


>consensus_4404#1 TGTTCTTTGCAAATGGTGACTGATGATGTGTTAACTGTTGCATTTACCAGACTGCAGCTA TCTAGTAACATTTGTACAAACTAGGAATGGCCACGAAGCAGCATCACATAGAGGAGGAGA TGCCGAATCAACAAGTGAAGTGAAGTGAGCAAGCTGAAGAAGAAGAGTGGGGCAAGCCGA CAGAGTTGAACCTCCTGAAGATCTCGCAAGGATCCTTTGGTTGCTGGCTCAGCTGTACCA TCTCCTCCTGGGCTCCAAAATCCACACTATCGATATCTCTGCCTTCACCGTCACCAAGAC TGCATGCAGACAGTACCAAGACGAGGACATGTACTGTTGCTCCTCCTGCGTTTCGCTTCA TTCATTCATCTGCTGCTGTGCTGTTCCTCCCCCTCTTCTGTGTGTTGCATCTGTAGATAC TCTACTCCCTTTTCATGTGTTTAATACTCCAGAAATGTGCATGTGTGTGTGTGCAATATG CATGCCTTGNCAATGTGTACTTGATGCTGCCAGCCTGATCGATATGACTTGGCCTCCTGC CTCCAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4404#0      TAGTAGCAATAGAGCATCAACATAGGAGGCAGCATACCAATGGAGAGCTTGTGTGGGCAG 60
consensus_4404#1      ------------------------------------------------------------
                                                                                  

consensus_4404#0      CTTGAGCATGAACATGAGCAGCAGCTGCACCAATCCTCCTCATCTTCACTTCTCCCCTAC 120
consensus_4404#1      ------------------------------------------------------------
                                                                                  

consensus_4404#0      TGCTTCCTTTCTGCTCCAGAGCCTCTTCCTGTCCCAGGCTTCCCTGCCGGCTGCAGCAAC 180
consensus_4404#1      ------------------------------------------------------------
                                                                                  

consensus_4404#0      CTTGAAGAGAAGGCAGCAGCAGCCATGGCGGCCTATGAGTATGAGAGCAGCAGCTGCAGC 240
consensus_4404#1      ------------------------------------------------------------
                                                                                  

consensus_4404#0      TCCCTTGACCCCACCTCAATGCCAATGGTGTACTCACCAATAGTGCTGCAGCCACAGGAG 300
consensus_4404#1      ------------------------------------------------------------
                                                                                  

consensus_4404#0      TGCCCTCTTTCCTTTGTCTTTGACAATGCCGCTGCCGCTGCCGGCGACAACAAATGGGTG 360
consensus_4404#1      ------------------------------------------------------------
                                                                                  

consensus_4404#0      CCTGGCATTCAAGGAAGTTGCCCTTGTTCATTGGGCTCAACTCAAGATATGGATGCAAGT 420
consensus_4404#1      ------------------------------------------------------------
                                                                                  

consensus_4404#0      TGGGGCAAGAGTAGAAAGCACAAGAGGAGCAATGTGGGCTTGAAGGGACTTGAGGAGAAA 480
consensus_4404#1      ------------------------------------------------------------
                                                                                  

consensus_4404#0      AAGGCAAGAAGGGTGGTACTACATCAACATGATGATGATGTGAAGAAGAAGGCCAAGGAG 540
consensus_4404#1      ------------------------------------------------------------
                                                                                  

consensus_4404#0      GCAGCAGGTGGGGAGCCACCAGCTGGGTACATTCATGTGAGGGCAAGGAGAGGCCAAGCA 600
consensus_4404#1      ------------------------------------------------------------
                                                                                  

consensus_4404#0      ACAGACAGCCACAGCCTTGCTGAGAGGGTGAGAAGGGAGAAGATCAGTGAGAGGATGAAG 660
consensus_4404#1      ------------------------------------------------------------
                                                                                  

consensus_4404#0      ATGCTGCAAAGCCTGGTTCCTGGTTGTGACAAGGTCACAGGGAAAGCCCTCATGCTAGAT 720
consensus_4404#1      ------------------------------------------------------------
                                                                                  

consensus_4404#0      GAGATCATCAGCTATGTGCAATCTCTGCAGAACCAAGTTGAGTTTCTGTCCATGAAGCTT 780
consensus_4404#1      ------------------------------------------------------------
                                                                                  

consensus_4404#0      GCCTCCCTTAGCCCTTTGATGTATGAGTTTGGACCGGGCATTGATATGCACCCAGATGTT 840
consensus_4404#1      ------------------------------------------------------------
                                                                                  

consensus_4404#0      CTTCGACAGCTTGCAAAGATGCCACATGAGATGGTGCAGTGCATGGGCCAAATGGGGAGT 900
consensus_4404#1      ------------------------------------------------------------
                                                                                  

consensus_4404#0      ACAGGCATTTCACTCCAAGGACTAGGAGGAGGACCCACAGGCTTTGCTCAGGATGGCAGC 960
consensus_4404#1      ------------------------------------------------------------
                                                                                  

consensus_4404#0      AGCCACATTAACATGGTGGTGATGCAAGTTGGAGAGCAAGGCCAGCAGCAGGGCTCTCTT 1020
consensus_4404#1      ----------------------TGTTCTTTGCAAATGGTGACTGATGATGTG------TT 32
                                            **    *** * *    * *         *      **

consensus_4404#0      CACCAGGTCGAGATGAGCAGCCACTGCTTCTTTCATTAGTAGTAGAACCCATGCATATTC 1080
consensus_4404#1      AACT--GTTGCATTTACCAG--ACTGCAGCTATC-----TAGTAACATTTGTACAAACTA 83
                       **   ** *   * * ***  *****  ** **     *****  *    * ** * * 

consensus_4404#0      TGGAATGGCCACGAAGCAGCATCACATAGAGGAGGAGATGCCGAATCAACAAGTGAAGTG 1140
consensus_4404#1      -GGAATGGCCACGAAGCAGCATCACATAGAGGAGGAGATGCCGAATCAACAAGTGAAGTG 142
                       ***********************************************************

consensus_4404#0      AAGTGAGCAAGCTGAAGAAGAAGAGTGGGGCAAGCCGACAGAGTTGAACCTCCTGAAGAT 1200
consensus_4404#1      AAGTGAGCAAGCTGAAGAAGAAGAGTGGGGCAAGCCGACAGAGTTGAACCTCCTGAAGAT 202
                      ************************************************************

consensus_4404#0      CTCGCAAGGATCCTTTGGTTGCTGGCTCAGCTGTACCATCTCCTCCTGGGCTCCAAAATC 1260
consensus_4404#1      CTCGCAAGGATCCTTTGGTTGCTGGCTCAGCTGTACCATCTCCTCCTGGGCTCCAAAATC 262
                      ************************************************************

consensus_4404#0      CACACTATCGATATCTCTGCCTTCACCGTCACCAAGACTGCATGCAGACAGTACCAAGAC 1320
consensus_4404#1      CACACTATCGATATCTCTGCCTTCACCGTCACCAAGACTGCATGCAGACAGTACCAAGAC 322
                      ************************************************************

consensus_4404#0      GAGGACATGTACTGTTGCTCCTCCTGCGTTTCGCTTCATTCATTCATCTGCTGCTGTGCT 1380
consensus_4404#1      GAGGACATGTACTGTTGCTCCTCCTGCGTTTCGCTTCATTCATTCATCTGCTGCTGTGCT 382
                      ************************************************************

consensus_4404#0      GTTCCTCCCCCTCTTCTGTGTGTTGCATCTGTAGATACTCTACTCCCTTTTCATGTGTTT 1440
consensus_4404#1      GTTCCTCCCCCTCTTCTGTGTGTTGCATCTGTAGATACTCTACTCCCTTTTCATGTGTTT 442
                      ************************************************************

consensus_4404#0      AATACTCCAGAAATGTGCATGTGTGTGTGTGCAATATGCATGCCTT-------------- 1486
consensus_4404#1      AATACTCCAGAAATGTGCATGTGTGTGTGTGCAATATGCATGCCTTGNCAATGTGTACTT 502
                      **********************************************              

consensus_4404#0      ------------------------------------------------------
consensus_4404#1      GATGCTGCCAGCCTGATCGATATGACTTGGCCTCCTGCCTCCAAAAAAAAAAAA 556
                                                                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)