These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4404#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1486 fasta sequence [TAGTAGCAATAGAGCATCAACATAGGAGGCAGCATACCAATGGAGAGCTTGTGTGGGCAGCTTGAGCATGAACATGAGCAGCAGCTGCACCAATCCTCCTCATCTTCACTTCTCCCCTACTGCTTCCTTTCTGCTCCAGAGCCTCTTCCTGTCCCAGGCTTCCCTGCCGGCTGCAGCAACCTTGAAGAGAAGGCAGCAGCAGCCATGGCGGCCTATGAGTATGAGAGCAGCAGCTGCAGCTCCCTTGACCCCACCTCAATGCCAATGGTGTACTCACCAATAGTGCTGCAGCCACAGGAGTGCCCTCTTTCCTTTGTCTTTGACAATGCCGCTGCCGCTGCCGGCGACAACAAATGGGTGCCTGGCATTCAAGGAAGTTGCCCTTGTTCATTGGGCTCAACTCAAGATATGGATGCAAGTTGGGGCAAGAGTAGAAAGCACAAGAGGAGCAATGTGGGCTTGAAGGGACTTGAGGAGAAAAAGGCAAGAAGGGTGGTACTACATCAACATGATGATGATGTGAAGAAGAAGGCCAAGGAGGCAGCAGGTGGGGAGCCACCAGCTGGGTACATTCATGTGAGGGCAAGGAGAGGCCAAGCAACAGACAGCCACAGCCTTGCTGAGAGGGTGAGAAGGGAGAAGATCAGTGAGAGGATGAAGATGCTGCAAAGCCTGGTTCCTGGTTGTGACAAGGTCACAGGGAAAGCCCTCATGCTAGATGAGATCATCAGCTATGTGCAATCTCTGCAGAACCAAGTTGAGTTTCTGTCCATGAAGCTTGCCTCCCTTAGCCCTTTGATGTATGAGTTTGGACCGGGCATTGATATGCACCCAGATGTTCTTCGACAGCTTGCAAAGATGCCACATGAGATGGTGCAGTGCATGGGCCAAATGGGGAGTACAGGCATTTCACTCCAAGGACTAGGAGGAGGACCCACAGGCTTTGCTCAGGATGGCAGCAGCCACATTAACATGGTGGTGATGCAAGTTGGAGAGCAAGGCCAGCAGCAGGGCTCTCTTCACCAGGTCGAGATGAGCAGCCACTGCTTCTTTCATTAGTAGTAGAACCCATGCATATTCTGGAATGGCCACGAAGCAGCATCACATAGAGGAGGAGATGCCGAATCAACAAGTGAAGTGAAGTGAGCAAGCTGAAGAAGAAGAGTGGGGCAAGCCGACAGAGTTGAACCTCCTGAAGATCTCGCAAGGATCCTTTGGTTGCTGGCTCAGCTGTACCATCTCCTCCTGGGCTCCAAAATCCACACTATCGATATCTCTGCCTTCACCGTCACCAAGACTGCATGCAGACAGTACCAAGACGAGGACATGTACTGTTGCTCCTCCTGCGTTTCGCTTCATTCATTCATCTGCTGCTGTGCTGTTCCTCCCCCTCTTCTGTGTGTTGCATCTGTAGATACTCTACTCCCTTTTCATGTGTTTAATACTCCAGAAATGTGCATGTGTGTGTGTGCAATATGCATGCCTT] [+] EMBL AK065864 [TAGTAGCAATAGAGCATCAACATAGGAGGCAGCATACCAATGGAGAGCTTGTGTGGGCAGCTTGAGCATGAACATGAGCAGCAGCTGCACCAATCCTCCTCATCTTCACTTCTCCCCTACTGCTTCCTTTCTGCTCCAGAGCCTCTTCCTGTCCCAGGCTTCCCTGCCGGCTGCAGCAACCTTGAAGAGAAGGCAGCAGCAGCCATGGCGGCCTATGAGTATGAGAGCAGCAGCTGCAGCTCCCTTGACCCCACCTCAATGCCAATGGTGTACTCACCAATAGTGCTGCAGCCACAGGAGTGCCCTCTTTCCTTTGTCTTTGACAATGCCGCTGCCGCTGCCGGCGACAACAAATGGGTGCCTGGCATTCAAGGAAGTTGCCCTTGTTCATTGGGCTCAACTCAAGATATGGATGCAAGTTGGGGCAAGAGTAGAAAGCACAAGAGGAGCAATGTGGGCTTGAAGGGACTTGAGGAGAAAAAGGCAAGAAGGGTGGTACTACATCAACATGATGATGATGTGAAGAAGAAGGCCAAGGAGGCAGCAGGTGGGGAGCCACCAGCTGGGTACATTCATGTGAGGGCAAGGAGAGGCCAAGCAACAGACAGCCACAGCCTTGCTGAGAGGGTGAGAAGGGAGAAGATCAGTGAGAGGATGAAGATGCTGCAAAGCCTGGTTCCTGGTTGTGACAAGGTCACAGGGAAAGCCCTCATGCTAGATGAGATCATCAGCTATGTGCAATCTCTGCAGAACCAAGTTGAGTTTCTGTCCATGAAGCTTGCCTCCCTTAGCCCTTTGATGTATGAGTTTGGACCGGGCATTGATATGCACCCAGATGTTCTTCGACAGCTTGCAAAGATGCCACATGAGATGGTGCAGTGCATGGGCCAAATGGGGAGTACAGGCATTTCACTCCAAGGACTAGGAGGAGGACCCACAGGCTTTGCTCAGGATGGCAGCAGCCACATTAACATGGTGGTGATGCAAGTTGGAGAGCAAGGCCAGCAGCAGGGCTCTCTTCACCAGGTCGAGATGAGCAGCCACTGCTTCTTTCATTAGTAGTAGAACCCATGCATATTCTGGAATGGCCACGAAGCAGCATCACATAGAGGAGGAGATGCCGAATCAACAAGTGAAGTGAAGTGAGCAAGCTGAAGAAGAAGAGTGGGGCAAGCCGACAGAGTTGAACCTCCTGAAGATCTCGCAAGGATCCTTTGGTTGCTGGCTCAGCTGTACCATCTCCTCCTGGGCTCCAAAATCCACACTATCGATATCTCTGCCTTCACCGTCACCAAGACTGCATGCAGACAGTACCAAGACGAGGACATGTACTGTTGCTCCTCCTGCGTTTCGCTTCATTCATTCATCTGCTGCTGTGCTGTTCCTCCCCCTCTTCTGTGTGTTGCATCTGTAGATACTCTACTCCCTTTTCATGTGTTTAATACTCCAGAAATGTGCATGTGTGTGTGTGCAATATGCATGCCTT] consensusID : consensus_4404#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 556 fasta sequence [TGTTCTTTGCAAATGGTGACTGATGATGTGTTAACTGTTGCATTTACCAGAC---TGCAGCTATCTAGTAACATTTGTACAAACTAGGAATGGCCACGAAGCAGCATCACATAGAGGAGGAGATGCCGAATCAACAAGTGAAGTGAAGTGAGCAAGCTGAAGAAGAAGAGTGGGGCAAGCCGACAGAGTTGAACCTCCTGAAGATCTCGCAAGGATCCTTTGGTTGCTGGCTCAGCTGTACCATCTCCTCCTGGGCTCCAAAATCCACACTATCGATATCTCTGCCTTCACCGTCACCAAGACTGCATGCAGACAGTACCAAGACGAGGACATGTACTGTTGCTCCTCCTGCGTTTCGCTTCATTCATTCATCTGCTGCTGTGCTGTTCCTCCCCCTCTTCTGTGTGTTGCATCTGTAGATACTCTACTCCCTTTTCATGTGTTTAATACTCCAGAAATGTGCA--TGTGTGTGTGTGCAATATGCATGCCTTGNCAATGTGTACTTGATGCTGCCAGCCTGATCGATATGACTTGGCCTCCTGCCTCCAAAAAAAAAAAA] [+] EMBL CA753763 [TGTTCTTTGCAAATGGTGACTGATGATGTGTTAACTGTTGCATTTACCAGAC TGCAGCTATCTAGTAACATTTGTACAAACTAGGAATGGCCACGAAGCAGCATCACATAGAGGAGGAGATGCCGAATCAACAAGTGAAGTGAAGTGAGCAAGCTGAAGAAGAAGAGTGGGGCAAGCCGACAGAGTTGAACCTCCTGAAGATCTCGCAAGGATCCTTTGGTTGCTGGCTCAGCTGTACCATCTCCTCCTGGGCTCCAAAATCCACACTATCGATATCTCTGCCTTCACCGTCACCAAGACTGCATGCAGACAGTACCAAGACGAGGACATGTACTGTTGCTCCTCCTGCGTTTCGCTTCATTCATTCATCTGCTGCTGTGCTGTTCCTCCCCCTCTTCTGTGTGTTGCATCTGTAGATACTCTACTCCCTTTTCATGTGTTTAATACTCCAGAAATGTGCA TGTGTGTGTGTGCAATATGCATGCCTTGNCAATGTGTACTTGATGCTGCCAGCCTGATCGATATGACTTGGCCTCCTGCCTCCAAAAAAAAAAAA] [+] EMBL CA766753 [ CTGTTGCATTTGCCAGACTAATGCAGCTATCTAGTAACATTTGTACAAACTAGGAATGGCCACGAAGCAGCATCACATAGAGGAGGAGATGCCGAATCAACAAGTGAAGTGAAGTGAGCAAGCTGAAGAAGAAGAGTGGGGCAAGCCGACAGAGTTGAACCTCCTGAAGATCTCGCAAGGATCCTTTGGTTGCTGGCTCAGCTGTACCATCTCCTCCTGGGCTCCAAAATCCACACTATCGATATCTCTGCCTTCACCGTCACCAAGACTGCATGCAGACAGTACCAAGACGAGGACATGTACTGTTGCTCCTCCTGCGTTTCGCTTCATTCATTCATCTGCTGCTGTGCTGTTCCTCCCCCTCTTCTGTGTGTTGCATCTGTAGATACTCTACTCCCTTTTCATGTGTTTAATACTCCAGAAATGTGCATGTGTGTGTGTGTGCAATATGCATGCCTTGCAAATGTGTACTTGATGCTGCCAGCCTGATCGATATGACTTGGCCTC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4404#0 TAGTAGCAATAGAGCATCAACATAGGAGGCAGCATACCAATGGAGAGCTTGTGTGGGCAG 60 consensus_4404#1 ------------------------------------------------------------ consensus_4404#0 CTTGAGCATGAACATGAGCAGCAGCTGCACCAATCCTCCTCATCTTCACTTCTCCCCTAC 120 consensus_4404#1 ------------------------------------------------------------ consensus_4404#0 TGCTTCCTTTCTGCTCCAGAGCCTCTTCCTGTCCCAGGCTTCCCTGCCGGCTGCAGCAAC 180 consensus_4404#1 ------------------------------------------------------------ consensus_4404#0 CTTGAAGAGAAGGCAGCAGCAGCCATGGCGGCCTATGAGTATGAGAGCAGCAGCTGCAGC 240 consensus_4404#1 ------------------------------------------------------------ consensus_4404#0 TCCCTTGACCCCACCTCAATGCCAATGGTGTACTCACCAATAGTGCTGCAGCCACAGGAG 300 consensus_4404#1 ------------------------------------------------------------ consensus_4404#0 TGCCCTCTTTCCTTTGTCTTTGACAATGCCGCTGCCGCTGCCGGCGACAACAAATGGGTG 360 consensus_4404#1 ------------------------------------------------------------ consensus_4404#0 CCTGGCATTCAAGGAAGTTGCCCTTGTTCATTGGGCTCAACTCAAGATATGGATGCAAGT 420 consensus_4404#1 ------------------------------------------------------------ consensus_4404#0 TGGGGCAAGAGTAGAAAGCACAAGAGGAGCAATGTGGGCTTGAAGGGACTTGAGGAGAAA 480 consensus_4404#1 ------------------------------------------------------------ consensus_4404#0 AAGGCAAGAAGGGTGGTACTACATCAACATGATGATGATGTGAAGAAGAAGGCCAAGGAG 540 consensus_4404#1 ------------------------------------------------------------ consensus_4404#0 GCAGCAGGTGGGGAGCCACCAGCTGGGTACATTCATGTGAGGGCAAGGAGAGGCCAAGCA 600 consensus_4404#1 ------------------------------------------------------------ consensus_4404#0 ACAGACAGCCACAGCCTTGCTGAGAGGGTGAGAAGGGAGAAGATCAGTGAGAGGATGAAG 660 consensus_4404#1 ------------------------------------------------------------ consensus_4404#0 ATGCTGCAAAGCCTGGTTCCTGGTTGTGACAAGGTCACAGGGAAAGCCCTCATGCTAGAT 720 consensus_4404#1 ------------------------------------------------------------ consensus_4404#0 GAGATCATCAGCTATGTGCAATCTCTGCAGAACCAAGTTGAGTTTCTGTCCATGAAGCTT 780 consensus_4404#1 ------------------------------------------------------------ consensus_4404#0 GCCTCCCTTAGCCCTTTGATGTATGAGTTTGGACCGGGCATTGATATGCACCCAGATGTT 840 consensus_4404#1 ------------------------------------------------------------ consensus_4404#0 CTTCGACAGCTTGCAAAGATGCCACATGAGATGGTGCAGTGCATGGGCCAAATGGGGAGT 900 consensus_4404#1 ------------------------------------------------------------ consensus_4404#0 ACAGGCATTTCACTCCAAGGACTAGGAGGAGGACCCACAGGCTTTGCTCAGGATGGCAGC 960 consensus_4404#1 ------------------------------------------------------------ consensus_4404#0 AGCCACATTAACATGGTGGTGATGCAAGTTGGAGAGCAAGGCCAGCAGCAGGGCTCTCTT 1020 consensus_4404#1 ----------------------TGTTCTTTGCAAATGGTGACTGATGATGTG------TT 32 ** *** * * * * * ** consensus_4404#0 CACCAGGTCGAGATGAGCAGCCACTGCTTCTTTCATTAGTAGTAGAACCCATGCATATTC 1080 consensus_4404#1 AACT--GTTGCATTTACCAG--ACTGCAGCTATC-----TAGTAACATTTGTACAAACTA 83 ** ** * * * *** ***** ** ** ***** * * ** * * consensus_4404#0 TGGAATGGCCACGAAGCAGCATCACATAGAGGAGGAGATGCCGAATCAACAAGTGAAGTG 1140 consensus_4404#1 -GGAATGGCCACGAAGCAGCATCACATAGAGGAGGAGATGCCGAATCAACAAGTGAAGTG 142 *********************************************************** consensus_4404#0 AAGTGAGCAAGCTGAAGAAGAAGAGTGGGGCAAGCCGACAGAGTTGAACCTCCTGAAGAT 1200 consensus_4404#1 AAGTGAGCAAGCTGAAGAAGAAGAGTGGGGCAAGCCGACAGAGTTGAACCTCCTGAAGAT 202 ************************************************************ consensus_4404#0 CTCGCAAGGATCCTTTGGTTGCTGGCTCAGCTGTACCATCTCCTCCTGGGCTCCAAAATC 1260 consensus_4404#1 CTCGCAAGGATCCTTTGGTTGCTGGCTCAGCTGTACCATCTCCTCCTGGGCTCCAAAATC 262 ************************************************************ consensus_4404#0 CACACTATCGATATCTCTGCCTTCACCGTCACCAAGACTGCATGCAGACAGTACCAAGAC 1320 consensus_4404#1 CACACTATCGATATCTCTGCCTTCACCGTCACCAAGACTGCATGCAGACAGTACCAAGAC 322 ************************************************************ consensus_4404#0 GAGGACATGTACTGTTGCTCCTCCTGCGTTTCGCTTCATTCATTCATCTGCTGCTGTGCT 1380 consensus_4404#1 GAGGACATGTACTGTTGCTCCTCCTGCGTTTCGCTTCATTCATTCATCTGCTGCTGTGCT 382 ************************************************************ consensus_4404#0 GTTCCTCCCCCTCTTCTGTGTGTTGCATCTGTAGATACTCTACTCCCTTTTCATGTGTTT 1440 consensus_4404#1 GTTCCTCCCCCTCTTCTGTGTGTTGCATCTGTAGATACTCTACTCCCTTTTCATGTGTTT 442 ************************************************************ consensus_4404#0 AATACTCCAGAAATGTGCATGTGTGTGTGTGCAATATGCATGCCTT-------------- 1486 consensus_4404#1 AATACTCCAGAAATGTGCATGTGTGTGTGTGCAATATGCATGCCTTGNCAATGTGTACTT 502 ********************************************** consensus_4404#0 ------------------------------------------------------ consensus_4404#1 GATGCTGCCAGCCTGATCGATATGACTTGGCCTCCTGCCTCCAAAAAAAAAAAA 556 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||