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Oryza sativa
cluster # 4408 cluster # 4408       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4408#0 length = 719 sequences # 1  
consensus_4408#1 length = 483 sequences # 1  
consensus_4408#2 length = 408 sequences # 1  

consensusID : consensus_4408#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 719
fasta sequence
                              [GTACACAAGAACTTCTCCATTGCAATAATCAATCGAGTTAATTAATTAGTTAGCACTAGCAAACATTGGCTAAAGTATTATATATCTATGGTTTTCCAAGTGCAGCCGCCATGGCTGCTCTTCCTCCACTTCATCGCCATCGCCGTCCTCCTCCCGGCCGTGGATAGTTTGCCGCCGCCGCCGCCGGCGGCGGCGGCGGCGGTGGCGACGGTGTTCGACGACAACTACGTGGCCACATACGGTGGAGACGGCTACCACCTGGTCAACCAGGGCGCGCAGATTAGCCTCACCCTGGACAAGAGCTCTGGTGCTGGATTCAGGTCCAAGTTGATGTACGGCTCAGGGTTCTTCCACATGAGGATCAAGGTTCCTGCCGGCTACACTGCCGGCGTTGTAACAGCCTACTATCTAGCGTCAGAGCCAGACAGGGACGTGCAGGACGAGGTGGACTTTGAGTTCCTGGGCGACAAGGACGGCGAACCCATCACCCTCCAGACCAACGTCTTCATCGGCGGCCATGGCGACCGTGAGCAGCGCCTNCGCCTCTGGTTCGACCCTGCCGNCGATTTNCATGACTACTCCATNCTATGGAATCCCCCTNCACCTTGTGTAAGCTCAGCTTCGAGCTCATTTCAATGNCATCGGGGATGACTACGAATATATACCTTTTTTATATATAATAGAAAATANTACATCTTTTGATCNTTGGTANTAACACG]

[+] EMBL CB096957             [GTACACAAGAACTTCTCCATTGCAATAATCAATCGAGTTAATTAATTAGTTAGCACTAGCAAACATTGGCTAAAGTATTATATATCTATGGTTTTCCAAGTGCAGCCGCCATGGCTGCTCTTCCTCCACTTCATCGCCATCGCCGTCCTCCTCCCGGCCGTGGATAGTTTGCCGCCGCCGCCGCCGGCGGCGGCGGCGGCGGTGGCGACGGTGTTCGACGACAACTACGTGGCCACATACGGTGGAGACGGCTACCACCTGGTCAACCAGGGCGCGCAGATTAGCCTCACCCTGGACAAGAGCTCTGGTGCTGGATTCAGGTCCAAGTTGATGTACGGCTCAGGGTTCTTCCACATGAGGATCAAGGTTCCTGCCGGCTACACTGCCGGCGTTGTAACAGCCTACTATCTAGCGTCAGAGCCAGACAGGGACGTGCAGGACGAGGTGGACTTTGAGTTCCTGGGCGACAAGGACGGCGAACCCATCACCCTCCAGACCAACGTCTTCATCGGCGGCCATGGCGACCGTGAGCAGCGCCTNCGCCTCTGGTTCGACCCTGCCGNCGATTTNCATGACTACTCCATNCTATGGAATCCCCCTNCACCTTGTGTAAGCTCAGCTTCGAGCTCATTTCAATGNCATCGGGGATGACTACGAATATATACCTTTTTTATATATAATAGAAAATANTACATCTTTTGATCNTTGGTANTAACACG]


>consensus_4408#0 GTACACAAGAACTTCTCCATTGCAATAATCAATCGAGTTAATTAATTAGTTAGCACTAGC AAACATTGGCTAAAGTATTATATATCTATGGTTTTCCAAGTGCAGCCGCCATGGCTGCTC TTCCTCCACTTCATCGCCATCGCCGTCCTCCTCCCGGCCGTGGATAGTTTGCCGCCGCCG CCGCCGGCGGCGGCGGCGGCGGTGGCGACGGTGTTCGACGACAACTACGTGGCCACATAC GGTGGAGACGGCTACCACCTGGTCAACCAGGGCGCGCAGATTAGCCTCACCCTGGACAAG AGCTCTGGTGCTGGATTCAGGTCCAAGTTGATGTACGGCTCAGGGTTCTTCCACATGAGG ATCAAGGTTCCTGCCGGCTACACTGCCGGCGTTGTAACAGCCTACTATCTAGCGTCAGAG CCAGACAGGGACGTGCAGGACGAGGTGGACTTTGAGTTCCTGGGCGACAAGGACGGCGAA CCCATCACCCTCCAGACCAACGTCTTCATCGGCGGCCATGGCGACCGTGAGCAGCGCCTN CGCCTCTGGTTCGACCCTGCCGNCGATTTNCATGACTACTCCATNCTATGGAATCCCCCT NCACCTTGTGTAAGCTCAGCTTCGAGCTCATTTCAATGNCATCGGGGATGACTACGAATA TATACCTTTTTTATATATAATAGAAAATANTACATCTTTTGATCNTTGGTANTAACACG



consensusID : consensus_4408#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 483
fasta sequence
                              [AACGTCTTCGTCGGCGGCCACGGCGACCGCGAGCAGCGCCTCCGCCTCTGGTTCGACCCCGCTGCCGACTTCCATGACTACTCCATCCTCTGGAACCCCTTCCACCTCGTGTAAGCTCAGTTCAATGTCACCATGACGGCCGTATACACTTTTGTTTTAAAACAAATAGTAGAAATAGTTACATCTTCCGTCTCTACCAACAAACACTTGCACATACAATAAGCGATGGGATAAATCCAGTGTTTTAAATAGCGGGCTATAACATTTAGCAGTTGACCCTTCTCAAGCAGCTCTAGACGGAGATTTAAAACCTGGATAAATCTAACTCCTACAAAATGACCACCTGAATTCTGTAGAAGCTAAGACAAATCACATGTACAAGCCATCGATTTGATTAATTATTTGGCAGGATATTCGTGGACGAGACGCCGGTGAGGGTGCTGAAGAACCTGACGAGCCGGGGCCCGGAGTTCGAGTTCCCGG]

[+] EMBL AU164201             [AACGTCTTCGTCGGCGGCCACGGCGACCGCGAGCAGCGCCTCCGCCTCTGGTTCGACCCCGCTGCCGACTTCCATGACTACTCCATCCTCTGGAACCCCTTCCACCTCGTGTAAGCTCAGTTCAATGTCACCATGACGGCCGTATACACTTTTGTTTTAAAACAAATAGTAGAAATAGTTACATCTTCCGTCTCTACCAACAAACACTTGCACATACAATAAGCGATGGGATAAATCCAGTGTTTTAAATAGCGGGCTATAACATTTAGCAGTTGACCCTTCTCAAGCAGCTCTAGACGGAGATTTAAAACCTGGATAAATCTAACTCCTACAAAATGACCACCTGAATTCTGTAGAAGCTAAGACAAATCACATGTACAAGCCATCGATTTGATTAATTATTTGGCAGGATATTCGTGGACGAGACGCCGGTGAGGGTGCTGAAGAACCTGACGAGCCGGGGCCCGGAGTTCGAGTTCCCGG]


>consensus_4408#1 AACGTCTTCGTCGGCGGCCACGGCGACCGCGAGCAGCGCCTCCGCCTCTGGTTCGACCCC GCTGCCGACTTCCATGACTACTCCATCCTCTGGAACCCCTTCCACCTCGTGTAAGCTCAG TTCAATGTCACCATGACGGCCGTATACACTTTTGTTTTAAAACAAATAGTAGAAATAGTT ACATCTTCCGTCTCTACCAACAAACACTTGCACATACAATAAGCGATGGGATAAATCCAG TGTTTTAAATAGCGGGCTATAACATTTAGCAGTTGACCCTTCTCAAGCAGCTCTAGACGG AGATTTAAAACCTGGATAAATCTAACTCCTACAAAATGACCACCTGAATTCTGTAGAAGC TAAGACAAATCACATGTACAAGCCATCGATTTGATTAATTATTTGGCAGGATATTCGTGG ACGAGACGCCGGTGAGGGTGCTGAAGAACCTGACGAGCCGGGGCCCGGAGTTCGAGTTCC CGG



consensusID : consensus_4408#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 408
fasta sequence
                              [GTCCTCCTCCTGGCCGTGGATAGTGTGCCGCCGGCGCCGGCGCCGCCGCCGNGNTGNGCGACGGTGTTCGACGACAACTACGTGGCAACATATGGTGGAGACGGCTACCACCTGGTCANCCAGGGCACGCAGATTAGCCTCACCCTGGATTCAGGTCCAAGTTGATGTACGGCTCAGGGTTCTTCCACATGAGGATCAAGGTTCCTGCCGGCTACACTGCCGGCGTTGTGACAGCCTACTATCTGGCGTCAGAGCCAGACTTGGGACGTGCAGGACGAGGTGGACTTCGAGTTCCTTGGGCGACAAGGATTGGCAACCCCATCANCCTTCAAACCAACGTCTTCGTCGGCGGCCACGGCGACCGCGAAGCAGCGCTTCCGCTTTNGTTTGGACCCCGTTGCCGATTTN]

[+] EMBL AU064316             [GTCCTCCTCCTGGCCGTGGATAGTGTGCCGCCGGCGCCGGCGCCGCCGCCGNGNTGNGCGACGGTGTTCGACGACAACTACGTGGCAACATATGGTGGAGACGGCTACCACCTGGTCANCCAGGGCACGCAGATTAGCCTCACCCTGGATTCAGGTCCAAGTTGATGTACGGCTCAGGGTTCTTCCACATGAGGATCAAGGTTCCTGCCGGCTACACTGCCGGCGTTGTGACAGCCTACTATCTGGCGTCAGAGCCAGACTTGGGACGTGCAGGACGAGGTGGACTTCGAGTTCCTTGGGCGACAAGGATTGGCAACCCCATCANCCTTCAAACCAACGTCTTCGTCGGCGGCCACGGCGACCGCGAAGCAGCGCTTCCGCTTTNGTTTGGACCCCGTTGCCGATTTN]


>consensus_4408#2 GTCCTCCTCCTGGCCGTGGATAGTGTGCCGCCGGCGCCGGCGCCGCCGCCGNGNTGNGCG ACGGTGTTCGACGACAACTACGTGGCAACATATGGTGGAGACGGCTACCACCTGGTCANC CAGGGCACGCAGATTAGCCTCACCCTGGATTCAGGTCCAAGTTGATGTACGGCTCAGGGT TCTTCCACATGAGGATCAAGGTTCCTGCCGGCTACACTGCCGGCGTTGTGACAGCCTACT ATCTGGCGTCAGAGCCAGACTTGGGACGTGCAGGACGAGGTGGACTTCGAGTTCCTTGGG CGACAAGGATTGGCAACCCCATCANCCTTCAAACCAACGTCTTCGTCGGCGGCCACGGCG ACCGCGAAGCAGCGCTTCCGCTTTNGTTTGGACCCCGTTGCCGATTTN



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4408#0      GTACACAAGAACTTCTCCATTGCAATAATCAATCGAGTTAATTAATTAGTTAGCACTAGC 60
consensus_4408#2      ------------------------------------------------------------
consensus_4408#1      ------------------------------------------------------------
                                                                                  

consensus_4408#0      AAACATTGGCTAAAGTATTATATATCTATGGTTTTCCAAGTGCAGCCGCCATGGCTGCTC 120
consensus_4408#2      ------------------------------------------------------------
consensus_4408#1      -----------------------------------------------------AACGTCT 7
                                                                                  

consensus_4408#0      TTCCTCCACTTCATCGCCATCGCCGTCCTCCTCCCGGCCGTGGATAGTTTGCCGCCGCCG 180
consensus_4408#2      ------------------------GTCCTCCTCCTGGCCGTGGATAGTGTGCCGCCGGCG 36
consensus_4408#1      TCGTCGGCGGCCACGGCGACCGCGAGCAGCGCCTCCGCCTCTGGTTCGACCCCGCTGCCG 67
                                                *  *  *   ***   * *      **** * **

consensus_4408#0      CCGCCGGCGGCGGCGGCGGCGGTGGCGACGGTGTTCGACGACAACTACGT--GGCCACAT 238
consensus_4408#2      C---CGGCGCCGCCGCCGNGNTGNGCGACGGTGTTCGACGACAACTACGT--GGCAACAT 91
consensus_4408#1      ACTTCCATGACTACTCCATCCTCTGGAACC-CCTTCCACCTCGTGTAAGCTCAGTTCAAT 126
                          *   * *  *  *       *  **    *** **  *   ** *    *    **

consensus_4408#0      ACGGTGGAGACGGC--TACCACCTGGTCAACCAGGGCGCGCAG----ATTAGCCTCACCC 292
consensus_4408#2      ATGGTGGAGACGGC--TACCACCTGGTCANCCAGGGCACGCAG----ATTAGCCTCACCC 145
consensus_4408#1      GTCACCATGACGGCCGTATACACTTTTGTTTTAAAACAAATAGTAGAAATAGTTACATCT 186
                              ******  **    **  *     *   *    **    * ***   ** * 

consensus_4408#0      TG-GACAAGAGCTCTGGTGCTGGATTCAGGTCCAAGTTGATGT-ACGGCTCAGGGTTCTT 350
consensus_4408#2      TG-G-------------------ATTCAGGTCCAAGTTGATGT-ACGGCTCAGGGTTCTT 184
consensus_4408#1      TCCGTCTCTACCAACAAACACTTGCACATACAATAAGCGATGGGATAAATCCAGTGTTTT 246
                      *  *                      **      *   ****  *    **  *  * **

consensus_4408#0      CCACATGAGGATCAAGGTTCCTGCCGGCTACACTGCCGGCGTTGTAACAGCCTACTATCT 410
consensus_4408#2      CCACATGAGGATCAAGGTTCCTGCCGGCTACACTGCCGGCGTTGTGACAGCCTACTATCT 244
consensus_4408#1      AAATAGCGGGCTATAACATTTAGCAGTTGACCCTTCTCAAGCAGCTCTAGACGGAGATTT 306
                        * *   ** *  *   *   ** *   ** ** *    *  *    ** *    ** *

consensus_4408#0      AGCGTCAGAGCCAGACA-GGGACGTGCAGGACGAGG---TGGACTTTG-AGTTCCT-GGG 464
consensus_4408#2      GGCGTCAGAGCCAGACTTGGGACGTGCAGGACGAGG---TGGACTTCG-AGTTCCTTGGG 300
consensus_4408#1      AAAACCTGGATAAATCT-AACTCCTACAAAATGACCACCTGAATTCTGTAGAAGCTAAGA 365
                           * *    *  *      * * **  * **     ** * *  * **   **  * 

consensus_4408#0      CGACAAGGAC-GGCGAACCCATCACCCTCCAGAC-------CAACGTCTTCATCGGCGGC 516
consensus_4408#2      CGACAAGGATTGGCAACCCCATCANCCTTCAAAC-------CAACGTCTTCGTCGGCGGC 353
consensus_4408#1      CAAATCACATGTACAAGCCATCGATTTGATTAATTATTTGGCAGGATATTCGTGGACGAG 425
                      * *     *    * * **    *        *        **   * *** * * **  

consensus_4408#0      CATGGCGACCGTGA-GCAGCGCCTNCGCCTCTGGTTCGACCCTGCCGNCGATTTNCATGA 575
consensus_4408#2      CACGGCGACCGCGAAGCAGCGCTTCCGCTTTNGTTTGGACCCCGTTGCCGATTTN----- 408
consensus_4408#1      -ACGCCGGTGAGGGTGCTGAAGAACCTGACGAGCCGGGGCCCGGAGTTCGAGTTCCCGG- 483
                       * * **     *  ** *      *      *    * *** *    *** **      

consensus_4408#0      CTACTCCATNCTATGGAATCCCCCTNCACCTTGTGTAAGCTCAGCTTCGAGCTCATTTCA 635
consensus_4408#2      ------------------------------------------------------------
consensus_4408#1      ------------------------------------------------------------
                                                                                  

consensus_4408#0      ATGNCATCGGGGATGACTACGAATATATACCTTTTTTATATATAATAGAAAATANTACAT 695
consensus_4408#2      ------------------------------------------------------------
consensus_4408#1      ------------------------------------------------------------
                                                                                  

consensus_4408#0      CTTTTGATCNTTGGTANTAACACG 719
consensus_4408#2      ------------------------
consensus_4408#1      ------------------------
                                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)