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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4408#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 719 fasta sequence
[GTACACAAGAACTTCTCCATTGCAATAATCAATCGAGTTAATTAATTAGTTAGCACTAGCAAACATTGGCTAAAGTATTATATATCTATGGTTTTCCAAGTGCAGCCGCCATGGCTGCTCTTCCTCCACTTCATCGCCATCGCCGTCCTCCTCCCGGCCGTGGATAGTTTGCCGCCGCCGCCGCCGGCGGCGGCGGCGGCGGTGGCGACGGTGTTCGACGACAACTACGTGGCCACATACGGTGGAGACGGCTACCACCTGGTCAACCAGGGCGCGCAGATTAGCCTCACCCTGGACAAGAGCTCTGGTGCTGGATTCAGGTCCAAGTTGATGTACGGCTCAGGGTTCTTCCACATGAGGATCAAGGTTCCTGCCGGCTACACTGCCGGCGTTGTAACAGCCTACTATCTAGCGTCAGAGCCAGACAGGGACGTGCAGGACGAGGTGGACTTTGAGTTCCTGGGCGACAAGGACGGCGAACCCATCACCCTCCAGACCAACGTCTTCATCGGCGGCCATGGCGACCGTGAGCAGCGCCTNCGCCTCTGGTTCGACCCTGCCGNCGATTTNCATGACTACTCCATNCTATGGAATCCCCCTNCACCTTGTGTAAGCTCAGCTTCGAGCTCATTTCAATGNCATCGGGGATGACTACGAATATATACCTTTTTTATATATAATAGAAAATANTACATCTTTTGATCNTTGGTANTAACACG]
[+] EMBL CB096957 [GTACACAAGAACTTCTCCATTGCAATAATCAATCGAGTTAATTAATTAGTTAGCACTAGCAAACATTGGCTAAAGTATTATATATCTATGGTTTTCCAAGTGCAGCCGCCATGGCTGCTCTTCCTCCACTTCATCGCCATCGCCGTCCTCCTCCCGGCCGTGGATAGTTTGCCGCCGCCGCCGCCGGCGGCGGCGGCGGCGGTGGCGACGGTGTTCGACGACAACTACGTGGCCACATACGGTGGAGACGGCTACCACCTGGTCAACCAGGGCGCGCAGATTAGCCTCACCCTGGACAAGAGCTCTGGTGCTGGATTCAGGTCCAAGTTGATGTACGGCTCAGGGTTCTTCCACATGAGGATCAAGGTTCCTGCCGGCTACACTGCCGGCGTTGTAACAGCCTACTATCTAGCGTCAGAGCCAGACAGGGACGTGCAGGACGAGGTGGACTTTGAGTTCCTGGGCGACAAGGACGGCGAACCCATCACCCTCCAGACCAACGTCTTCATCGGCGGCCATGGCGACCGTGAGCAGCGCCTNCGCCTCTGGTTCGACCCTGCCGNCGATTTNCATGACTACTCCATNCTATGGAATCCCCCTNCACCTTGTGTAAGCTCAGCTTCGAGCTCATTTCAATGNCATCGGGGATGACTACGAATATATACCTTTTTTATATATAATAGAAAATANTACATCTTTTGATCNTTGGTANTAACACG]
consensusID : consensus_4408#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 483 fasta sequence
[AACGTCTTCGTCGGCGGCCACGGCGACCGCGAGCAGCGCCTCCGCCTCTGGTTCGACCCCGCTGCCGACTTCCATGACTACTCCATCCTCTGGAACCCCTTCCACCTCGTGTAAGCTCAGTTCAATGTCACCATGACGGCCGTATACACTTTTGTTTTAAAACAAATAGTAGAAATAGTTACATCTTCCGTCTCTACCAACAAACACTTGCACATACAATAAGCGATGGGATAAATCCAGTGTTTTAAATAGCGGGCTATAACATTTAGCAGTTGACCCTTCTCAAGCAGCTCTAGACGGAGATTTAAAACCTGGATAAATCTAACTCCTACAAAATGACCACCTGAATTCTGTAGAAGCTAAGACAAATCACATGTACAAGCCATCGATTTGATTAATTATTTGGCAGGATATTCGTGGACGAGACGCCGGTGAGGGTGCTGAAGAACCTGACGAGCCGGGGCCCGGAGTTCGAGTTCCCGG]
[+] EMBL AU164201 [AACGTCTTCGTCGGCGGCCACGGCGACCGCGAGCAGCGCCTCCGCCTCTGGTTCGACCCCGCTGCCGACTTCCATGACTACTCCATCCTCTGGAACCCCTTCCACCTCGTGTAAGCTCAGTTCAATGTCACCATGACGGCCGTATACACTTTTGTTTTAAAACAAATAGTAGAAATAGTTACATCTTCCGTCTCTACCAACAAACACTTGCACATACAATAAGCGATGGGATAAATCCAGTGTTTTAAATAGCGGGCTATAACATTTAGCAGTTGACCCTTCTCAAGCAGCTCTAGACGGAGATTTAAAACCTGGATAAATCTAACTCCTACAAAATGACCACCTGAATTCTGTAGAAGCTAAGACAAATCACATGTACAAGCCATCGATTTGATTAATTATTTGGCAGGATATTCGTGGACGAGACGCCGGTGAGGGTGCTGAAGAACCTGACGAGCCGGGGCCCGGAGTTCGAGTTCCCGG]
consensusID : consensus_4408#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 408 fasta sequence
[GTCCTCCTCCTGGCCGTGGATAGTGTGCCGCCGGCGCCGGCGCCGCCGCCGNGNTGNGCGACGGTGTTCGACGACAACTACGTGGCAACATATGGTGGAGACGGCTACCACCTGGTCANCCAGGGCACGCAGATTAGCCTCACCCTGGATTCAGGTCCAAGTTGATGTACGGCTCAGGGTTCTTCCACATGAGGATCAAGGTTCCTGCCGGCTACACTGCCGGCGTTGTGACAGCCTACTATCTGGCGTCAGAGCCAGACTTGGGACGTGCAGGACGAGGTGGACTTCGAGTTCCTTGGGCGACAAGGATTGGCAACCCCATCANCCTTCAAACCAACGTCTTCGTCGGCGGCCACGGCGACCGCGAAGCAGCGCTTCCGCTTTNGTTTGGACCCCGTTGCCGATTTN]
[+] EMBL AU064316 [GTCCTCCTCCTGGCCGTGGATAGTGTGCCGCCGGCGCCGGCGCCGCCGCCGNGNTGNGCGACGGTGTTCGACGACAACTACGTGGCAACATATGGTGGAGACGGCTACCACCTGGTCANCCAGGGCACGCAGATTAGCCTCACCCTGGATTCAGGTCCAAGTTGATGTACGGCTCAGGGTTCTTCCACATGAGGATCAAGGTTCCTGCCGGCTACACTGCCGGCGTTGTGACAGCCTACTATCTGGCGTCAGAGCCAGACTTGGGACGTGCAGGACGAGGTGGACTTCGAGTTCCTTGGGCGACAAGGATTGGCAACCCCATCANCCTTCAAACCAACGTCTTCGTCGGCGGCCACGGCGACCGCGAAGCAGCGCTTCCGCTTTNGTTTGGACCCCGTTGCCGATTTN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4408#0 GTACACAAGAACTTCTCCATTGCAATAATCAATCGAGTTAATTAATTAGTTAGCACTAGC 60
consensus_4408#2 ------------------------------------------------------------
consensus_4408#1 ------------------------------------------------------------
consensus_4408#0 AAACATTGGCTAAAGTATTATATATCTATGGTTTTCCAAGTGCAGCCGCCATGGCTGCTC 120
consensus_4408#2 ------------------------------------------------------------
consensus_4408#1 -----------------------------------------------------AACGTCT 7
consensus_4408#0 TTCCTCCACTTCATCGCCATCGCCGTCCTCCTCCCGGCCGTGGATAGTTTGCCGCCGCCG 180
consensus_4408#2 ------------------------GTCCTCCTCCTGGCCGTGGATAGTGTGCCGCCGGCG 36
consensus_4408#1 TCGTCGGCGGCCACGGCGACCGCGAGCAGCGCCTCCGCCTCTGGTTCGACCCCGCTGCCG 67
* * * *** * * **** * **
consensus_4408#0 CCGCCGGCGGCGGCGGCGGCGGTGGCGACGGTGTTCGACGACAACTACGT--GGCCACAT 238
consensus_4408#2 C---CGGCGCCGCCGCCGNGNTGNGCGACGGTGTTCGACGACAACTACGT--GGCAACAT 91
consensus_4408#1 ACTTCCATGACTACTCCATCCTCTGGAACC-CCTTCCACCTCGTGTAAGCTCAGTTCAAT 126
* * * * * * ** *** ** * ** * * **
consensus_4408#0 ACGGTGGAGACGGC--TACCACCTGGTCAACCAGGGCGCGCAG----ATTAGCCTCACCC 292
consensus_4408#2 ATGGTGGAGACGGC--TACCACCTGGTCANCCAGGGCACGCAG----ATTAGCCTCACCC 145
consensus_4408#1 GTCACCATGACGGCCGTATACACTTTTGTTTTAAAACAAATAGTAGAAATAGTTACATCT 186
****** ** ** * * * ** * *** ** *
consensus_4408#0 TG-GACAAGAGCTCTGGTGCTGGATTCAGGTCCAAGTTGATGT-ACGGCTCAGGGTTCTT 350
consensus_4408#2 TG-G-------------------ATTCAGGTCCAAGTTGATGT-ACGGCTCAGGGTTCTT 184
consensus_4408#1 TCCGTCTCTACCAACAAACACTTGCACATACAATAAGCGATGGGATAAATCCAGTGTTTT 246
* * ** * **** * ** * * **
consensus_4408#0 CCACATGAGGATCAAGGTTCCTGCCGGCTACACTGCCGGCGTTGTAACAGCCTACTATCT 410
consensus_4408#2 CCACATGAGGATCAAGGTTCCTGCCGGCTACACTGCCGGCGTTGTGACAGCCTACTATCT 244
consensus_4408#1 AAATAGCGGGCTATAACATTTAGCAGTTGACCCTTCTCAAGCAGCTCTAGACGGAGATTT 306
* * ** * * * ** * ** ** * * * ** * ** *
consensus_4408#0 AGCGTCAGAGCCAGACA-GGGACGTGCAGGACGAGG---TGGACTTTG-AGTTCCT-GGG 464
consensus_4408#2 GGCGTCAGAGCCAGACTTGGGACGTGCAGGACGAGG---TGGACTTCG-AGTTCCTTGGG 300
consensus_4408#1 AAAACCTGGATAAATCT-AACTCCTACAAAATGACCACCTGAATTCTGTAGAAGCTAAGA 365
* * * * * * ** * ** ** * * * ** ** *
consensus_4408#0 CGACAAGGAC-GGCGAACCCATCACCCTCCAGAC-------CAACGTCTTCATCGGCGGC 516
consensus_4408#2 CGACAAGGATTGGCAACCCCATCANCCTTCAAAC-------CAACGTCTTCGTCGGCGGC 353
consensus_4408#1 CAAATCACATGTACAAGCCATCGATTTGATTAATTATTTGGCAGGATATTCGTGGACGAG 425
* * * * * ** * * ** * *** * * **
consensus_4408#0 CATGGCGACCGTGA-GCAGCGCCTNCGCCTCTGGTTCGACCCTGCCGNCGATTTNCATGA 575
consensus_4408#2 CACGGCGACCGCGAAGCAGCGCTTCCGCTTTNGTTTGGACCCCGTTGCCGATTTN----- 408
consensus_4408#1 -ACGCCGGTGAGGGTGCTGAAGAACCTGACGAGCCGGGGCCCGGAGTTCGAGTTCCCGG- 483
* * ** * ** * * * * *** * *** **
consensus_4408#0 CTACTCCATNCTATGGAATCCCCCTNCACCTTGTGTAAGCTCAGCTTCGAGCTCATTTCA 635
consensus_4408#2 ------------------------------------------------------------
consensus_4408#1 ------------------------------------------------------------
consensus_4408#0 ATGNCATCGGGGATGACTACGAATATATACCTTTTTTATATATAATAGAAAATANTACAT 695
consensus_4408#2 ------------------------------------------------------------
consensus_4408#1 ------------------------------------------------------------
consensus_4408#0 CTTTTGATCNTTGGTANTAACACG 719
consensus_4408#2 ------------------------
consensus_4408#1 ------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||