These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4409#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2277 fasta sequence [CACAGCCATCACCTCCTCTTCTTCCTCTCTGCAGTAGGGGTGCTAGGCTAGGGTAGCTAGCTAGCTACCATCATCATGAGCTCAATGCCACAAGAAGCCATTGCTCCCCATCCTTCCTAACCTTCCTGCTGGTTTTGCAAACATCCCACACACACACAAAGCAGTGACAGTGAGTGCCAATGCTGAGCTCTTGTGGTGGCCATGGCCATGAAAATCCAAGAAGCTTGCAAGAAGAACACCATGGCAGATGTGGTGAGCAGCAAGGTGGAGGAGGAGGAGGAGGGCAAGAGCAAGAGCAAGATGGGTTCTTGGTGAGAGAGGCAAGGGCATCCCCACCATCTCCATCTTCTTCATCATTTCTTGGATCCACAAGCTCTTCTTGTTCTGGAGGAGGAGGAGGAGGGCAGATGTTGAGCTTCTCCTCCCCCAATGGAACAGCAGGGTTGGGCTTGAGCTCAGGAGGAAGCATGCAGGGGGTCTTGGCAAGGGTCAGGGGGCCGTTCACCCCAACACAGTGGATGGAGCTGGAGCACCAGGCACTGATCTACAAGCACATTGCTGCAAATGTTTCTGTCCCTTCCAGCTTGCTCCTCCCCATCAGGAGAAGCCTCCATCCATGGGGTACTACCTTTTTTATTCAGCTCATGTGATTGTTATTCTGTTCTGCGTCATATCCCCTTTCTGTTGTAAATAGCTCAAGATAGGAATAAAGGAATAAGTACTTAGAAAATATGAAAGAAGAAAATGCAGGTCATATGGTTGCAGTTGCCTGTTAGTTTCAGATGTATAAAGGTGTCCCAGATTGGGGTTCTGTTGTGTTGAGGTTGGTAGTTATATCTTGTTGTCTTTCTTGGGACAGGATGGCTTTGTGATTAATTAGTTTGTAAAGGCAGTAATCGAAGTCCCTTTCTGGTACTAAAAGCAGTATTGGCTGCAAATCTAGGCATTATAATGATTTGAAGATTGCATTGATACTAGAAATGTACTGCTTTTGGATGTTTGCATGATGCTCATGTGCTAATATTTCCAGTTACCAATGTGGTGCTTCTTGAGTTTAGATATAAAACTCTTCTCTTACATTGGGATTCTGATTTTTTTTTAGTTGTGCCTCTAGTCTTTTCCACAACAAGATCTCCAAATGTAGTCATAAAGTGTTCTGATTCCCTTTAACTGGCGTCATGTTTGGTATGTACAAACTAAGTTCTTATGCAGACCTGGGAGGAATGTTGCTGAAATAGTGCAAGAATATATCGTTTTGAGGTGGTTTATATATTTCTGACATGAAATGGGCATTCTATTTTGCACCAGGATGGGGATCATTCCCTCCTGGCTGTGCTGATGTAGAACCCAGAAGATGCCGCCGCACAGACGGCAAGAAGTGGCGGTGCTCCAGAGATGCTGTTGGGGATCAGAAGTATTGTGAGCGACACATAAACCGTGGTCGCCATCGTTCAAGAAAGCATGTGGAAGGCCGAAAGGCGACACTCACCATTGCAGAACCATCCACGGTTATTGCTGCTGGTGTATCATCTCGCGGCCACACTGTGGCTCGGCAGAAGCAGGTGAAAGGCTCAGCTGCTACTGTCTCTGATCCTTTCTCGAGACAATCCAACAGGAAATTTCTGGAGAAACAGAACGTTGTCGACCAATTGTCTCCCATGGATTCATTTGATTTCTCATCCACACAATCTTCTCCAAACTATGACAATGTAGCATTGTCACCACTGAAGTTGCACCATGATCATGATGAATCTTACATCGGGCATGGAGCAGGCAGTTCATCAGAAAAAGGCAGTATGATGTACGAAAGTCGGTTAACAGTCTCTAAGGAAACACTTGATGATGGACCTTTAGGTGAAGTTTTCAAAAGAAAGAATTGCCAATCAGCTTCTACAGAAATCTTAACTGAAAAATGGACTGAGAACCCCAACTTACATTGCCCATCTGGAATCCTACAAATGGCTACTAAGTTCAATTCAATTTCCAGCGGCAACACAGTAAATAGTGGTGGCACCGCAGTGGAGAATCTTATCACTGATAATGGATATCTTACTGCAAGAATGATGAATCCTCATATTGTCCCAACACTTCTCTAAGGCTGTGTTTGAAAGTTCATGTTGGATTCGCAAATGATTGAAAGTACGTTTATGGATGGTTCTATAAGTTCCTGTTGTTTCCTTCGTTATGTGTTCTTGTGTTCCTCACCTTTTTATCTTTTGGTTGAGGTTGGTATGTTGTAATTTTCTCCTGTGCTACCTTGTAATATGCTGAAGTTAA] [+] EMBL CA756749 [CACAGCCATCACCTCCTCTTCTTCCTCTCTGCAGTAGGGGTGCTAGGCTAGGGTAGCTAGCTAGCTACCATCATCATGAGCTCAATGCCACAAGAAGCCATTGCTCCCCATCCTTCCTAACCTTCCTGCTGGTTTTGCAAACATCCCACACACACACAAAGCAGTGACAGTGAGTGCCAATGCTGAGCTCTTGTGGTGGCCATGGCCATGAAAATCCAAGAAGCTTGCAAGAAGAA ] [+] EMBL AK103055 [ GCAAACATCCCACACACACACAAAGCAGTGACAGTGAGTGCCAATGCTGAGCTCTTGTGGTGGCCATGGCCATGGAAATCCAAGAAGCTTGCAAGAAGAACACCATGGCAGATGTGGTGAGCAGCAAGGTGGAGGAGGAGGAGGAGGGCAAGAGCAAGAGCAAGATGGGTTCTTGGTGAGAGAGGCAAGGGCATCCCCACCATCTCCATCTTCTTCATCATTTCTTGGATCCACAAGCTCTTCTTGTTCTGGAGGAGGAGGAGGAGGGCAGATGTTGAGCTTCTCCTCCCCCAATGGAACAGCAGGGTTGGGCTTGAGCTCAGGAGGAAGCATGCAGGGGGTCTTGGCAAGGGTCAGGGGGCCGTTCACCCCAACACAGTGGATGGAGCTGGAGCACCAGGCACTGATCTACAAGCACATTGCTGCAAATGTTTCTGTCCCTTCCAGCTTGCTCCTCCCCATCAGGAGAAGCCTCCATCCATGGGGTACTACCTTTTTTATTCAGCTCATGTGATTGTTATTCTGTTCTGCGTCATATCCCCTTTCTGTTGTAAATAGCTCAAGATAGGAATAAAGGAATAAGTACTTAGAAAATATGAAAGAAGAAAATGCAGGTCATATGGTTGCAGTTGCCTGTTAGTTTCAGATGTATAAAGGTGTCCCAGATTGGGGTTCTGTTGTGTTGAGGTTGGTAGTTATATCTTGTTGTCTTTCTTGGGACAGGATGGCTTTGTGATTAATTAGTTTGTAAAGGCAGTAATCGAAGTCCCTTTCTGGTACTAAAAGCAGTATTGGCTGCAAATCTAGGCATTATAATGATTTGAAGATTGCATTGATACTAGAAATGTACTGCTTTTGGATGTTTGCATGATGCTCATGTGCTAATATTTCCAGTTACCAATGTGGTGCTTCTTGAGTTTAGATATAAAACTCTTCTCTTACATTGGGATTCTGATTTTTTTTTAGTTGTGCCTCTAGTCTTTTCCACAACAAGATCTCCAAATGTAGTCATAAAGTGTTCTGATTCCCTTTAACTGGCGTCATGTTTGGTATGTACAAACTAAGTTCTTATGCAGACCTGGGAGGAATGTTGCTGAAATAGTGCAAGAATATATCGTTTTGAGGTGGTTTATATATTTCTGACATGAAATGGGCATTCTATTTTGCACCAGGATGGGGATCATTCCCTCCTGGCTGTGCTGATGTAGAACCCAGAAGATGCCGCCGCACAGACGGCAAGAAGTGGCGGTGCTCCAGAGATGCTGTTGGGGATCAGAAGTATTGTGAGCGACACATAAACCGTGGTCGCCATCGTTCAAGAAAGCATGTGGAAGGCCGAAAGGCGACACTCACCATTGCAGAACCATCCACGGTTATTGCTGCTGGTGTATCATCTCGCGGCCACACTGTGGCTCGGCAGAAGCAGGTGAAAGGCTCAGCTGCTACTGTCTCTGATCCTTTCTCGAGACAATCCAACAGGAAATTTCTGGAGAAACAGAACGTTGTCGACCAATTGTCTCCCATGGATTCATTTGATTTCTCATCCACACAATCTTCTCCAAACTATGACAATGTAGCATTGTCACCACTGAAGTTGCACCATGATCATGATGAATCTTACATCGGGCATGGAGCAGGCAGTTCATCAGAAAAAGGCAGTATGATGTACGAAAGTCGGTTAACAGTCTCTAAGGAAACACTTGATGATGGACCTTTAGGTGAAGTTTTCAAAAGAAAGAATTGCCAATCAGCTTCTACAGAAATCTTAACTGAAAAATGGACTGAGAACCCCAACTTACATTGCCCATCTGGAATCCTACAAATGGCTACTAAGTTCAATTCAATTTCCAGCGGCAACACAGTAAATAGTGGTGGCACCGCAGTGGAGAATCTTATCACTGATAATGGATATCTTACTGCAAGAATGATGAATCCTCATATTGTCCCAACACTTCTCTAAGGCTGTGTTTGAAAGTTCATGTTGGATTCGCAAATGATTGAAAGTACGTTTATGGATGGTTCTATAAGTTCCTGTTGTTTCCTTCGTTATGTGTTCTTGTGTTCCTCACCTTTTTATCTTTTGGTTGAGGTTGGTATGTTGTAATTTTCTCCTGTGCTACCTTGTAATATGCTGAAGTTAA] consensusID : consensus_4409#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 498 fasta sequence [CAAGGTGGAGGAGGAGGAGGAGGGCAAGAGCAAGAGCAAGATGGGTTCTTGGTGAGAGAGGCAAGGGCATCCCCACCATCTCCATCTTCTTCATCATTTCTTGGATCCACAAGCTCTTCTTGTTCTGGAGGAGGAGGAGGAGGGCAGATGTTGAGCTTCTCCTCCCCCAATGGAACAGCAGGGTTGGGCTTGAGCTCAGGAGGAAGCATGCAGGGGGTCTTGGCAAGGGTCAGGGGGCCGTTCACCCCAACACAGTGGATGGAGCTGGAGCACCAGGCACTGATCTACAAGCACATTGCTGCAAATGTTTCTGTCCCTTCCAGCTTGCTCCTCCCCATCAGGAGAAGCCTCCATCCATGGGGATGGNGGATCATTCCCTCCTGGCTGTGCTGATGTAGAACCCAGAAGATGCCGCCGCACAGACGGCAAGAAGTGGCGGTGCTCCAGAGATGCTGTTGGGGATCAGAAGTATTGTGAGCGACACATAAACCGTGGTCG] [+] EMBL CF323832 [CAAGGTGGAGGAGGAGGAGGAGGGCAAGAGCAAGAGCAAGATGGGTTCTTGGTGAGAGAGGCAAGGGCATCCCCACCATCTCCATCTTCTTCATCATTTCTTGGATCCACAAGCTCTTCTTGTTCTGGAGGAGGAGGAGGAGGGCAGATGTTGAGCTTCTCCTCCCCCAATGGAACAGCAGGGTTGGGCTTGAGCTCAGGAGGAAGCATGCAGGGGGTCTTGGCAAGGGTCAGGGGGCCGTTCACCCCAACACAGTGGATGGAGCTGGAGCACCAGGCACTGATCTACAAGCACATTGCTGCAAATGTTTCTGTCCCTTCCAGCTTGCTCCTCCCCATCAGGAGAAGCCTCCATCCATGGGGATGGNGGATCATTCCCTCCTGGCTGTGCTGATGTAGAACCCAGAAGATGCCGCCGCACAGACGGCAAGAAGTGGCGGTGCTCCAGAGATGCTGTTGGGGATCAGAAGTATTGTGAGCGACACATAAACCGTGGTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4409#0 CACAGCCATCACCTCCTCTTCTTCCTCTCTGCAGTAGGGGTGCTAGGCTAGGGTAGCTAG 60 consensus_4409#1 ------------------------------------------------------------ consensus_4409#0 CTAGCTACCATCATCATGAGCTCAATGCCACAAGAAGCCATTGCTCCCCATCCTTCCTAA 120 consensus_4409#1 ------------------------------------------------------------ consensus_4409#0 CCTTCCTGCTGGTTTTGCAAACATCCCACACACACACAAAGCAGTGACAGTGAGTGCCAA 180 consensus_4409#1 ------------------------------------------------------------ consensus_4409#0 TGCTGAGCTCTTGTGGTGGCCATGGCCATGAAAATCCAAGAAGCTTGCAAGAAGAACACC 240 consensus_4409#1 ------------------------------------------------------------ consensus_4409#0 ATGGCAGATGTGGTGAGCAGCAAGGTGGAGGAGGAGGAGGAGGGCAAGAGCAAGAGCAAG 300 consensus_4409#1 --------------------CAAGGTGGAGGAGGAGGAGGAGGGCAAGAGCAAGAGCAAG 40 **************************************** consensus_4409#0 ATGGGTTCTTGGTGAGAGAGGCAAGGGCATCCCCACCATCTCCATCTTCTTCATCATTTC 360 consensus_4409#1 ATGGGTTCTTGGTGAGAGAGGCAAGGGCATCCCCACCATCTCCATCTTCTTCATCATTTC 100 ************************************************************ consensus_4409#0 TTGGATCCACAAGCTCTTCTTGTTCTGGAGGAGGAGGAGGAGGGCAGATGTTGAGCTTCT 420 consensus_4409#1 TTGGATCCACAAGCTCTTCTTGTTCTGGAGGAGGAGGAGGAGGGCAGATGTTGAGCTTCT 160 ************************************************************ consensus_4409#0 CCTCCCCCAATGGAACAGCAGGGTTGGGCTTGAGCTCAGGAGGAAGCATGCAGGGGGTCT 480 consensus_4409#1 CCTCCCCCAATGGAACAGCAGGGTTGGGCTTGAGCTCAGGAGGAAGCATGCAGGGGGTCT 220 ************************************************************ consensus_4409#0 TGGCAAGGGTCAGGGGGCCGTTCACCCCAACACAGTGGATGGAGCTGGAGCACCAGGCAC 540 consensus_4409#1 TGGCAAGGGTCAGGGGGCCGTTCACCCCAACACAGTGGATGGAGCTGGAGCACCAGGCAC 280 ************************************************************ consensus_4409#0 TGATCTACAAGCACATTGCTGCAAATGTTTCTGTCCCTTCCAGCTTGCTCCTCCCCATCA 600 consensus_4409#1 TGATCTACAAGCACATTGCTGCAAATGTTTCTGTCCCTTCCAGCTTGCTCCTCCCCATCA 340 ************************************************************ consensus_4409#0 GGAGAAGCCTCCATCCATGGGGTACTACCTTTTTTATTCAGCTCATGTGATTGTTATTCT 660 consensus_4409#1 GGAGAAGCCTCCATCCATGGGG-ATGGNGGATC--ATTCC-CTCCTGGCTGTGCTGATGT 396 ********************** * * **** *** ** ** * * * consensus_4409#0 GTTCTGCGTCATATCCCCTTTCTGTTGTAAATAGCTCAAGATAGGAATAAAGGAATAAGT 720 consensus_4409#1 AGAACCCAGAAGATGCCGCCGC----ACAGACGGCAAGAAGTGGCGGTGCTCCAG-AGAT 451 * * ** ** * * * ** * * * * * * * consensus_4409#0 ACTTAGAAAATATGAAAGAAGAAAATGCAGGTCATATGGTTGCAGTTGCCTGTTAGTTTC 780 consensus_4409#1 GCTGTTGGGGATCAGAAGTATTGTGAGCGACACATA-AACCGTGGTCG------------ 498 ** *** * ** **** * ** * consensus_4409#0 AGATGTATAAAGGTGTCCCAGATTGGGGTTCTGTTGTGTTGAGGTTGGTAGTTATATCTT 840 consensus_4409#1 ------------------------------------------------------------ consensus_4409#0 GTTGTCTTTCTTGGGACAGGATGGCTTTGTGATTAATTAGTTTGTAAAGGCAGTAATCGA 900 consensus_4409#1 ------------------------------------------------------------ consensus_4409#0 AGTCCCTTTCTGGTACTAAAAGCAGTATTGGCTGCAAATCTAGGCATTATAATGATTTGA 960 consensus_4409#1 ------------------------------------------------------------ consensus_4409#0 AGATTGCATTGATACTAGAAATGTACTGCTTTTGGATGTTTGCATGATGCTCATGTGCTA 1020 consensus_4409#1 ------------------------------------------------------------ consensus_4409#0 ATATTTCCAGTTACCAATGTGGTGCTTCTTGAGTTTAGATATAAAACTCTTCTCTTACAT 1080 consensus_4409#1 ------------------------------------------------------------ consensus_4409#0 TGGGATTCTGATTTTTTTTTAGTTGTGCCTCTAGTCTTTTCCACAACAAGATCTCCAAAT 1140 consensus_4409#1 ------------------------------------------------------------ consensus_4409#0 GTAGTCATAAAGTGTTCTGATTCCCTTTAACTGGCGTCATGTTTGGTATGTACAAACTAA 1200 consensus_4409#1 ------------------------------------------------------------ consensus_4409#0 GTTCTTATGCAGACCTGGGAGGAATGTTGCTGAAATAGTGCAAGAATATATCGTTTTGAG 1260 consensus_4409#1 ------------------------------------------------------------ consensus_4409#0 GTGGTTTATATATTTCTGACATGAAATGGGCATTCTATTTTGCACCAGGATGGGGATCAT 1320 consensus_4409#1 ------------------------------------------------------------ consensus_4409#0 TCCCTCCTGGCTGTGCTGATGTAGAACCCAGAAGATGCCGCCGCACAGACGGCAAGAAGT 1380 consensus_4409#1 ------------------------------------------------------------ consensus_4409#0 GGCGGTGCTCCAGAGATGCTGTTGGGGATCAGAAGTATTGTGAGCGACACATAAACCGTG 1440 consensus_4409#1 ------------------------------------------------------------ consensus_4409#0 GTCGCCATCGTTCAAGAAAGCATGTGGAAGGCCGAAAGGCGACACTCACCATTGCAGAAC 1500 consensus_4409#1 ------------------------------------------------------------ consensus_4409#0 CATCCACGGTTATTGCTGCTGGTGTATCATCTCGCGGCCACACTGTGGCTCGGCAGAAGC 1560 consensus_4409#1 ------------------------------------------------------------ consensus_4409#0 AGGTGAAAGGCTCAGCTGCTACTGTCTCTGATCCTTTCTCGAGACAATCCAACAGGAAAT 1620 consensus_4409#1 ------------------------------------------------------------ consensus_4409#0 TTCTGGAGAAACAGAACGTTGTCGACCAATTGTCTCCCATGGATTCATTTGATTTCTCAT 1680 consensus_4409#1 ------------------------------------------------------------ consensus_4409#0 CCACACAATCTTCTCCAAACTATGACAATGTAGCATTGTCACCACTGAAGTTGCACCATG 1740 consensus_4409#1 ------------------------------------------------------------ consensus_4409#0 ATCATGATGAATCTTACATCGGGCATGGAGCAGGCAGTTCATCAGAAAAAGGCAGTATGA 1800 consensus_4409#1 ------------------------------------------------------------ consensus_4409#0 TGTACGAAAGTCGGTTAACAGTCTCTAAGGAAACACTTGATGATGGACCTTTAGGTGAAG 1860 consensus_4409#1 ------------------------------------------------------------ consensus_4409#0 TTTTCAAAAGAAAGAATTGCCAATCAGCTTCTACAGAAATCTTAACTGAAAAATGGACTG 1920 consensus_4409#1 ------------------------------------------------------------ consensus_4409#0 AGAACCCCAACTTACATTGCCCATCTGGAATCCTACAAATGGCTACTAAGTTCAATTCAA 1980 consensus_4409#1 ------------------------------------------------------------ consensus_4409#0 TTTCCAGCGGCAACACAGTAAATAGTGGTGGCACCGCAGTGGAGAATCTTATCACTGATA 2040 consensus_4409#1 ------------------------------------------------------------ consensus_4409#0 ATGGATATCTTACTGCAAGAATGATGAATCCTCATATTGTCCCAACACTTCTCTAAGGCT 2100 consensus_4409#1 ------------------------------------------------------------ consensus_4409#0 GTGTTTGAAAGTTCATGTTGGATTCGCAAATGATTGAAAGTACGTTTATGGATGGTTCTA 2160 consensus_4409#1 ------------------------------------------------------------ consensus_4409#0 TAAGTTCCTGTTGTTTCCTTCGTTATGTGTTCTTGTGTTCCTCACCTTTTTATCTTTTGG 2220 consensus_4409#1 ------------------------------------------------------------ consensus_4409#0 TTGAGGTTGGTATGTTGTAATTTTCTCCTGTGCTACCTTGTAATATGCTGAAGTTAA 2277 consensus_4409#1 --------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||