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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4409#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2277 fasta sequence
[CACAGCCATCACCTCCTCTTCTTCCTCTCTGCAGTAGGGGTGCTAGGCTAGGGTAGCTAGCTAGCTACCATCATCATGAGCTCAATGCCACAAGAAGCCATTGCTCCCCATCCTTCCTAACCTTCCTGCTGGTTTTGCAAACATCCCACACACACACAAAGCAGTGACAGTGAGTGCCAATGCTGAGCTCTTGTGGTGGCCATGGCCATGAAAATCCAAGAAGCTTGCAAGAAGAACACCATGGCAGATGTGGTGAGCAGCAAGGTGGAGGAGGAGGAGGAGGGCAAGAGCAAGAGCAAGATGGGTTCTTGGTGAGAGAGGCAAGGGCATCCCCACCATCTCCATCTTCTTCATCATTTCTTGGATCCACAAGCTCTTCTTGTTCTGGAGGAGGAGGAGGAGGGCAGATGTTGAGCTTCTCCTCCCCCAATGGAACAGCAGGGTTGGGCTTGAGCTCAGGAGGAAGCATGCAGGGGGTCTTGGCAAGGGTCAGGGGGCCGTTCACCCCAACACAGTGGATGGAGCTGGAGCACCAGGCACTGATCTACAAGCACATTGCTGCAAATGTTTCTGTCCCTTCCAGCTTGCTCCTCCCCATCAGGAGAAGCCTCCATCCATGGGGTACTACCTTTTTTATTCAGCTCATGTGATTGTTATTCTGTTCTGCGTCATATCCCCTTTCTGTTGTAAATAGCTCAAGATAGGAATAAAGGAATAAGTACTTAGAAAATATGAAAGAAGAAAATGCAGGTCATATGGTTGCAGTTGCCTGTTAGTTTCAGATGTATAAAGGTGTCCCAGATTGGGGTTCTGTTGTGTTGAGGTTGGTAGTTATATCTTGTTGTCTTTCTTGGGACAGGATGGCTTTGTGATTAATTAGTTTGTAAAGGCAGTAATCGAAGTCCCTTTCTGGTACTAAAAGCAGTATTGGCTGCAAATCTAGGCATTATAATGATTTGAAGATTGCATTGATACTAGAAATGTACTGCTTTTGGATGTTTGCATGATGCTCATGTGCTAATATTTCCAGTTACCAATGTGGTGCTTCTTGAGTTTAGATATAAAACTCTTCTCTTACATTGGGATTCTGATTTTTTTTTAGTTGTGCCTCTAGTCTTTTCCACAACAAGATCTCCAAATGTAGTCATAAAGTGTTCTGATTCCCTTTAACTGGCGTCATGTTTGGTATGTACAAACTAAGTTCTTATGCAGACCTGGGAGGAATGTTGCTGAAATAGTGCAAGAATATATCGTTTTGAGGTGGTTTATATATTTCTGACATGAAATGGGCATTCTATTTTGCACCAGGATGGGGATCATTCCCTCCTGGCTGTGCTGATGTAGAACCCAGAAGATGCCGCCGCACAGACGGCAAGAAGTGGCGGTGCTCCAGAGATGCTGTTGGGGATCAGAAGTATTGTGAGCGACACATAAACCGTGGTCGCCATCGTTCAAGAAAGCATGTGGAAGGCCGAAAGGCGACACTCACCATTGCAGAACCATCCACGGTTATTGCTGCTGGTGTATCATCTCGCGGCCACACTGTGGCTCGGCAGAAGCAGGTGAAAGGCTCAGCTGCTACTGTCTCTGATCCTTTCTCGAGACAATCCAACAGGAAATTTCTGGAGAAACAGAACGTTGTCGACCAATTGTCTCCCATGGATTCATTTGATTTCTCATCCACACAATCTTCTCCAAACTATGACAATGTAGCATTGTCACCACTGAAGTTGCACCATGATCATGATGAATCTTACATCGGGCATGGAGCAGGCAGTTCATCAGAAAAAGGCAGTATGATGTACGAAAGTCGGTTAACAGTCTCTAAGGAAACACTTGATGATGGACCTTTAGGTGAAGTTTTCAAAAGAAAGAATTGCCAATCAGCTTCTACAGAAATCTTAACTGAAAAATGGACTGAGAACCCCAACTTACATTGCCCATCTGGAATCCTACAAATGGCTACTAAGTTCAATTCAATTTCCAGCGGCAACACAGTAAATAGTGGTGGCACCGCAGTGGAGAATCTTATCACTGATAATGGATATCTTACTGCAAGAATGATGAATCCTCATATTGTCCCAACACTTCTCTAAGGCTGTGTTTGAAAGTTCATGTTGGATTCGCAAATGATTGAAAGTACGTTTATGGATGGTTCTATAAGTTCCTGTTGTTTCCTTCGTTATGTGTTCTTGTGTTCCTCACCTTTTTATCTTTTGGTTGAGGTTGGTATGTTGTAATTTTCTCCTGTGCTACCTTGTAATATGCTGAAGTTAA]
[+] EMBL CA756749 [CACAGCCATCACCTCCTCTTCTTCCTCTCTGCAGTAGGGGTGCTAGGCTAGGGTAGCTAGCTAGCTACCATCATCATGAGCTCAATGCCACAAGAAGCCATTGCTCCCCATCCTTCCTAACCTTCCTGCTGGTTTTGCAAACATCCCACACACACACAAAGCAGTGACAGTGAGTGCCAATGCTGAGCTCTTGTGGTGGCCATGGCCATGAAAATCCAAGAAGCTTGCAAGAAGAA ]
[+] EMBL AK103055 [ GCAAACATCCCACACACACACAAAGCAGTGACAGTGAGTGCCAATGCTGAGCTCTTGTGGTGGCCATGGCCATGGAAATCCAAGAAGCTTGCAAGAAGAACACCATGGCAGATGTGGTGAGCAGCAAGGTGGAGGAGGAGGAGGAGGGCAAGAGCAAGAGCAAGATGGGTTCTTGGTGAGAGAGGCAAGGGCATCCCCACCATCTCCATCTTCTTCATCATTTCTTGGATCCACAAGCTCTTCTTGTTCTGGAGGAGGAGGAGGAGGGCAGATGTTGAGCTTCTCCTCCCCCAATGGAACAGCAGGGTTGGGCTTGAGCTCAGGAGGAAGCATGCAGGGGGTCTTGGCAAGGGTCAGGGGGCCGTTCACCCCAACACAGTGGATGGAGCTGGAGCACCAGGCACTGATCTACAAGCACATTGCTGCAAATGTTTCTGTCCCTTCCAGCTTGCTCCTCCCCATCAGGAGAAGCCTCCATCCATGGGGTACTACCTTTTTTATTCAGCTCATGTGATTGTTATTCTGTTCTGCGTCATATCCCCTTTCTGTTGTAAATAGCTCAAGATAGGAATAAAGGAATAAGTACTTAGAAAATATGAAAGAAGAAAATGCAGGTCATATGGTTGCAGTTGCCTGTTAGTTTCAGATGTATAAAGGTGTCCCAGATTGGGGTTCTGTTGTGTTGAGGTTGGTAGTTATATCTTGTTGTCTTTCTTGGGACAGGATGGCTTTGTGATTAATTAGTTTGTAAAGGCAGTAATCGAAGTCCCTTTCTGGTACTAAAAGCAGTATTGGCTGCAAATCTAGGCATTATAATGATTTGAAGATTGCATTGATACTAGAAATGTACTGCTTTTGGATGTTTGCATGATGCTCATGTGCTAATATTTCCAGTTACCAATGTGGTGCTTCTTGAGTTTAGATATAAAACTCTTCTCTTACATTGGGATTCTGATTTTTTTTTAGTTGTGCCTCTAGTCTTTTCCACAACAAGATCTCCAAATGTAGTCATAAAGTGTTCTGATTCCCTTTAACTGGCGTCATGTTTGGTATGTACAAACTAAGTTCTTATGCAGACCTGGGAGGAATGTTGCTGAAATAGTGCAAGAATATATCGTTTTGAGGTGGTTTATATATTTCTGACATGAAATGGGCATTCTATTTTGCACCAGGATGGGGATCATTCCCTCCTGGCTGTGCTGATGTAGAACCCAGAAGATGCCGCCGCACAGACGGCAAGAAGTGGCGGTGCTCCAGAGATGCTGTTGGGGATCAGAAGTATTGTGAGCGACACATAAACCGTGGTCGCCATCGTTCAAGAAAGCATGTGGAAGGCCGAAAGGCGACACTCACCATTGCAGAACCATCCACGGTTATTGCTGCTGGTGTATCATCTCGCGGCCACACTGTGGCTCGGCAGAAGCAGGTGAAAGGCTCAGCTGCTACTGTCTCTGATCCTTTCTCGAGACAATCCAACAGGAAATTTCTGGAGAAACAGAACGTTGTCGACCAATTGTCTCCCATGGATTCATTTGATTTCTCATCCACACAATCTTCTCCAAACTATGACAATGTAGCATTGTCACCACTGAAGTTGCACCATGATCATGATGAATCTTACATCGGGCATGGAGCAGGCAGTTCATCAGAAAAAGGCAGTATGATGTACGAAAGTCGGTTAACAGTCTCTAAGGAAACACTTGATGATGGACCTTTAGGTGAAGTTTTCAAAAGAAAGAATTGCCAATCAGCTTCTACAGAAATCTTAACTGAAAAATGGACTGAGAACCCCAACTTACATTGCCCATCTGGAATCCTACAAATGGCTACTAAGTTCAATTCAATTTCCAGCGGCAACACAGTAAATAGTGGTGGCACCGCAGTGGAGAATCTTATCACTGATAATGGATATCTTACTGCAAGAATGATGAATCCTCATATTGTCCCAACACTTCTCTAAGGCTGTGTTTGAAAGTTCATGTTGGATTCGCAAATGATTGAAAGTACGTTTATGGATGGTTCTATAAGTTCCTGTTGTTTCCTTCGTTATGTGTTCTTGTGTTCCTCACCTTTTTATCTTTTGGTTGAGGTTGGTATGTTGTAATTTTCTCCTGTGCTACCTTGTAATATGCTGAAGTTAA]
consensusID : consensus_4409#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 498 fasta sequence
[CAAGGTGGAGGAGGAGGAGGAGGGCAAGAGCAAGAGCAAGATGGGTTCTTGGTGAGAGAGGCAAGGGCATCCCCACCATCTCCATCTTCTTCATCATTTCTTGGATCCACAAGCTCTTCTTGTTCTGGAGGAGGAGGAGGAGGGCAGATGTTGAGCTTCTCCTCCCCCAATGGAACAGCAGGGTTGGGCTTGAGCTCAGGAGGAAGCATGCAGGGGGTCTTGGCAAGGGTCAGGGGGCCGTTCACCCCAACACAGTGGATGGAGCTGGAGCACCAGGCACTGATCTACAAGCACATTGCTGCAAATGTTTCTGTCCCTTCCAGCTTGCTCCTCCCCATCAGGAGAAGCCTCCATCCATGGGGATGGNGGATCATTCCCTCCTGGCTGTGCTGATGTAGAACCCAGAAGATGCCGCCGCACAGACGGCAAGAAGTGGCGGTGCTCCAGAGATGCTGTTGGGGATCAGAAGTATTGTGAGCGACACATAAACCGTGGTCG]
[+] EMBL CF323832 [CAAGGTGGAGGAGGAGGAGGAGGGCAAGAGCAAGAGCAAGATGGGTTCTTGGTGAGAGAGGCAAGGGCATCCCCACCATCTCCATCTTCTTCATCATTTCTTGGATCCACAAGCTCTTCTTGTTCTGGAGGAGGAGGAGGAGGGCAGATGTTGAGCTTCTCCTCCCCCAATGGAACAGCAGGGTTGGGCTTGAGCTCAGGAGGAAGCATGCAGGGGGTCTTGGCAAGGGTCAGGGGGCCGTTCACCCCAACACAGTGGATGGAGCTGGAGCACCAGGCACTGATCTACAAGCACATTGCTGCAAATGTTTCTGTCCCTTCCAGCTTGCTCCTCCCCATCAGGAGAAGCCTCCATCCATGGGGATGGNGGATCATTCCCTCCTGGCTGTGCTGATGTAGAACCCAGAAGATGCCGCCGCACAGACGGCAAGAAGTGGCGGTGCTCCAGAGATGCTGTTGGGGATCAGAAGTATTGTGAGCGACACATAAACCGTGGTCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4409#0 CACAGCCATCACCTCCTCTTCTTCCTCTCTGCAGTAGGGGTGCTAGGCTAGGGTAGCTAG 60
consensus_4409#1 ------------------------------------------------------------
consensus_4409#0 CTAGCTACCATCATCATGAGCTCAATGCCACAAGAAGCCATTGCTCCCCATCCTTCCTAA 120
consensus_4409#1 ------------------------------------------------------------
consensus_4409#0 CCTTCCTGCTGGTTTTGCAAACATCCCACACACACACAAAGCAGTGACAGTGAGTGCCAA 180
consensus_4409#1 ------------------------------------------------------------
consensus_4409#0 TGCTGAGCTCTTGTGGTGGCCATGGCCATGAAAATCCAAGAAGCTTGCAAGAAGAACACC 240
consensus_4409#1 ------------------------------------------------------------
consensus_4409#0 ATGGCAGATGTGGTGAGCAGCAAGGTGGAGGAGGAGGAGGAGGGCAAGAGCAAGAGCAAG 300
consensus_4409#1 --------------------CAAGGTGGAGGAGGAGGAGGAGGGCAAGAGCAAGAGCAAG 40
****************************************
consensus_4409#0 ATGGGTTCTTGGTGAGAGAGGCAAGGGCATCCCCACCATCTCCATCTTCTTCATCATTTC 360
consensus_4409#1 ATGGGTTCTTGGTGAGAGAGGCAAGGGCATCCCCACCATCTCCATCTTCTTCATCATTTC 100
************************************************************
consensus_4409#0 TTGGATCCACAAGCTCTTCTTGTTCTGGAGGAGGAGGAGGAGGGCAGATGTTGAGCTTCT 420
consensus_4409#1 TTGGATCCACAAGCTCTTCTTGTTCTGGAGGAGGAGGAGGAGGGCAGATGTTGAGCTTCT 160
************************************************************
consensus_4409#0 CCTCCCCCAATGGAACAGCAGGGTTGGGCTTGAGCTCAGGAGGAAGCATGCAGGGGGTCT 480
consensus_4409#1 CCTCCCCCAATGGAACAGCAGGGTTGGGCTTGAGCTCAGGAGGAAGCATGCAGGGGGTCT 220
************************************************************
consensus_4409#0 TGGCAAGGGTCAGGGGGCCGTTCACCCCAACACAGTGGATGGAGCTGGAGCACCAGGCAC 540
consensus_4409#1 TGGCAAGGGTCAGGGGGCCGTTCACCCCAACACAGTGGATGGAGCTGGAGCACCAGGCAC 280
************************************************************
consensus_4409#0 TGATCTACAAGCACATTGCTGCAAATGTTTCTGTCCCTTCCAGCTTGCTCCTCCCCATCA 600
consensus_4409#1 TGATCTACAAGCACATTGCTGCAAATGTTTCTGTCCCTTCCAGCTTGCTCCTCCCCATCA 340
************************************************************
consensus_4409#0 GGAGAAGCCTCCATCCATGGGGTACTACCTTTTTTATTCAGCTCATGTGATTGTTATTCT 660
consensus_4409#1 GGAGAAGCCTCCATCCATGGGG-ATGGNGGATC--ATTCC-CTCCTGGCTGTGCTGATGT 396
********************** * * **** *** ** ** * * *
consensus_4409#0 GTTCTGCGTCATATCCCCTTTCTGTTGTAAATAGCTCAAGATAGGAATAAAGGAATAAGT 720
consensus_4409#1 AGAACCCAGAAGATGCCGCCGC----ACAGACGGCAAGAAGTGGCGGTGCTCCAG-AGAT 451
* * ** ** * * * ** * * * * * * *
consensus_4409#0 ACTTAGAAAATATGAAAGAAGAAAATGCAGGTCATATGGTTGCAGTTGCCTGTTAGTTTC 780
consensus_4409#1 GCTGTTGGGGATCAGAAGTATTGTGAGCGACACATA-AACCGTGGTCG------------ 498
** *** * ** **** * ** *
consensus_4409#0 AGATGTATAAAGGTGTCCCAGATTGGGGTTCTGTTGTGTTGAGGTTGGTAGTTATATCTT 840
consensus_4409#1 ------------------------------------------------------------
consensus_4409#0 GTTGTCTTTCTTGGGACAGGATGGCTTTGTGATTAATTAGTTTGTAAAGGCAGTAATCGA 900
consensus_4409#1 ------------------------------------------------------------
consensus_4409#0 AGTCCCTTTCTGGTACTAAAAGCAGTATTGGCTGCAAATCTAGGCATTATAATGATTTGA 960
consensus_4409#1 ------------------------------------------------------------
consensus_4409#0 AGATTGCATTGATACTAGAAATGTACTGCTTTTGGATGTTTGCATGATGCTCATGTGCTA 1020
consensus_4409#1 ------------------------------------------------------------
consensus_4409#0 ATATTTCCAGTTACCAATGTGGTGCTTCTTGAGTTTAGATATAAAACTCTTCTCTTACAT 1080
consensus_4409#1 ------------------------------------------------------------
consensus_4409#0 TGGGATTCTGATTTTTTTTTAGTTGTGCCTCTAGTCTTTTCCACAACAAGATCTCCAAAT 1140
consensus_4409#1 ------------------------------------------------------------
consensus_4409#0 GTAGTCATAAAGTGTTCTGATTCCCTTTAACTGGCGTCATGTTTGGTATGTACAAACTAA 1200
consensus_4409#1 ------------------------------------------------------------
consensus_4409#0 GTTCTTATGCAGACCTGGGAGGAATGTTGCTGAAATAGTGCAAGAATATATCGTTTTGAG 1260
consensus_4409#1 ------------------------------------------------------------
consensus_4409#0 GTGGTTTATATATTTCTGACATGAAATGGGCATTCTATTTTGCACCAGGATGGGGATCAT 1320
consensus_4409#1 ------------------------------------------------------------
consensus_4409#0 TCCCTCCTGGCTGTGCTGATGTAGAACCCAGAAGATGCCGCCGCACAGACGGCAAGAAGT 1380
consensus_4409#1 ------------------------------------------------------------
consensus_4409#0 GGCGGTGCTCCAGAGATGCTGTTGGGGATCAGAAGTATTGTGAGCGACACATAAACCGTG 1440
consensus_4409#1 ------------------------------------------------------------
consensus_4409#0 GTCGCCATCGTTCAAGAAAGCATGTGGAAGGCCGAAAGGCGACACTCACCATTGCAGAAC 1500
consensus_4409#1 ------------------------------------------------------------
consensus_4409#0 CATCCACGGTTATTGCTGCTGGTGTATCATCTCGCGGCCACACTGTGGCTCGGCAGAAGC 1560
consensus_4409#1 ------------------------------------------------------------
consensus_4409#0 AGGTGAAAGGCTCAGCTGCTACTGTCTCTGATCCTTTCTCGAGACAATCCAACAGGAAAT 1620
consensus_4409#1 ------------------------------------------------------------
consensus_4409#0 TTCTGGAGAAACAGAACGTTGTCGACCAATTGTCTCCCATGGATTCATTTGATTTCTCAT 1680
consensus_4409#1 ------------------------------------------------------------
consensus_4409#0 CCACACAATCTTCTCCAAACTATGACAATGTAGCATTGTCACCACTGAAGTTGCACCATG 1740
consensus_4409#1 ------------------------------------------------------------
consensus_4409#0 ATCATGATGAATCTTACATCGGGCATGGAGCAGGCAGTTCATCAGAAAAAGGCAGTATGA 1800
consensus_4409#1 ------------------------------------------------------------
consensus_4409#0 TGTACGAAAGTCGGTTAACAGTCTCTAAGGAAACACTTGATGATGGACCTTTAGGTGAAG 1860
consensus_4409#1 ------------------------------------------------------------
consensus_4409#0 TTTTCAAAAGAAAGAATTGCCAATCAGCTTCTACAGAAATCTTAACTGAAAAATGGACTG 1920
consensus_4409#1 ------------------------------------------------------------
consensus_4409#0 AGAACCCCAACTTACATTGCCCATCTGGAATCCTACAAATGGCTACTAAGTTCAATTCAA 1980
consensus_4409#1 ------------------------------------------------------------
consensus_4409#0 TTTCCAGCGGCAACACAGTAAATAGTGGTGGCACCGCAGTGGAGAATCTTATCACTGATA 2040
consensus_4409#1 ------------------------------------------------------------
consensus_4409#0 ATGGATATCTTACTGCAAGAATGATGAATCCTCATATTGTCCCAACACTTCTCTAAGGCT 2100
consensus_4409#1 ------------------------------------------------------------
consensus_4409#0 GTGTTTGAAAGTTCATGTTGGATTCGCAAATGATTGAAAGTACGTTTATGGATGGTTCTA 2160
consensus_4409#1 ------------------------------------------------------------
consensus_4409#0 TAAGTTCCTGTTGTTTCCTTCGTTATGTGTTCTTGTGTTCCTCACCTTTTTATCTTTTGG 2220
consensus_4409#1 ------------------------------------------------------------
consensus_4409#0 TTGAGGTTGGTATGTTGTAATTTTCTCCTGTGCTACCTTGTAATATGCTGAAGTTAA 2277
consensus_4409#1 ---------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||