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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4422#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2119 fasta sequence
[TTTCCCATTCCCCCCTCTATTTCAACATCTCCCCCCATGTCTCTCCTCCCCCATCTCGCCATTTCAATTCCACCAACGCGAGAGAGAGAGAGATCGAGAAGCAAACCCGACCCGACAACCAATTTCTCCGACCCAATTCGCCTCCTCCAAGATTCTTGCGCCACCGCCGAGGAGGCGATCGGTTCTTGATTTCTTGAATTCGATTCTTGAAGAATTCTTGGGGGTGGTATGAGGTCGTCGGCGACGGCGGCGGCGGAGGCGGCGGAGGCTGACCAGTCGAGGGCGATGTACGAGCTGTGCGCGCTGCTGCTGACGGTGCTCCGGGCGTGGCCGGAGGAAGGGGGCGGGCGGGGGGCGGCGGCGTGGCCGCGGCAGGTGACGGCGGCGGGGGTGGCGTCGATGCTGCTGGGGGCGTCGGTGGCGCTGATGCTGTGCGGGTCGGTGACCTTCATGCTGGGGTTCTTCCTCATGCCCTGGGTCATCGGCCTCGCCTGCGTCTTCCTCCTCGTCGGGTTCGTCACCAACCTGTCCGTGATCTGGAGGGCCATCCTCTGGCCCGCCTCGTGCTCCTCCTCGCCCAAGGTGGCCTCCACATGTACGTGATCTTGGCCGTTTAGGAGTAGGGCTCCTACATGTTTGGGGACAAAAGGGAAGAGGCTCCTCTTTTTACATGTTTGGGTTAGTCAGGATTGGGGAATTCACTGTGGATTCATGCGTAATTTGGGGGGTAAATATGATGATTGGTGGTGTTTCTTGGCTTTATCAGAGTTCAAAATGCGCTAAATTGAGCGCCTTTGCTTAAATTATGCCCAATTGTGAAGCATCTGTCATACTTTGGGTGCTTCTCTGAAAATTGAGATATGTGTAGCTTCTGTATTTAAATTGTGGTTTTATTAGGATTGTTGCGTTGATTTAGTTCGGGAGGACATCATTCCAAATAATGTGAGCAGCTTGTTGTCGTAGTTAAAATAAAATTGACGCGATGGTAAGAAGTGGAAAGGGTCAGAATTGGTGGTTGTCGATGCAATCCAGATGATTCTCAAATGTTTTGGATCTCTAATTTGATGTAGAGAGGCTGGCTATAGCTTCAGGTTGATGAAATTCGATATTGAAAGGGCGTAAGGGACTAAATTGCGTCGGTGAGCACCGACCATATGAACTGAAAGGGGGAAAGGAGCTGTAAACATATAGAGTCAAAAAGGGCCATATAACAATGAAATGGATGCCTGAGCGCTTTCGTGCTTGCTAAGTAGGAGACCAGAAAGCTTAAGTTTATAACTTTGTTCGTTTCGACGGGATACAAGCTGAGTTTCTTAGGAACAAAGGAGCTTGAGAGGAACTAAATGCAACTAGTGACAATCGAGAAGAAGAGCTTTCTTAGATTCCCAGGAAGAATAGAATAGCCTAGTTAAGCTTGACCTAGTGTATTCCTTTCACCTTTCAAGATTTCACTGTCAATGCATCTAGAAAAATTGATATAGCTAGTTAATTGTTGAAATTAGAAAATACTTTATATGGGTGTAATACAGGTGAAGCTGAACCTCAATTTCCCTGCCAACCTTGATGTGCTTGTTCCTCACAAACGAACAGTATTCTACATCAATTTTCTGTGGTAAATTAATGCGGATGTATTAAGTTCACCATCAAGATCAGCTATTACAACCCAAATAAGTTCAAATATGATATCAGTGCAATTCCTTTCTTGGTCCTACTGACTGTAAACAGTATCATGCCTATATCACTATTATCATCACTATCATGCTTTTAAGAGTTGTTGTCTTTATTGCATTCATACCTATTTCCAACGTTATCGTATAACAAGAGCTTTGGATTGTATCTTCTGGCAGGGTATATATTTTCCAAGCCTCCATTCATGTCCTACATGTGAAGTTGAATGAGAAGTAGGTTCTCATGGAGGTGTATACAAGCAGAAGAGTTTGGGCGGCATTACGTTGTTGCCATCCTATCTTTTCCTTCCCGGACAACATTTTTACCATGTAACGCCGCAACAAGCTTAGATGGTTTTATATATTATAATTAGGATGGCAAGCTTTAACAGAAAACTTTGTACATATGGAAAAAGAACGGTTTGGTTTTATTATTTATTACATCTATCCTA]
[+] EMBL AK067860 [TTTCCCATTCCCCCCTCTATTTCAACATCTCCCCCCATGTCTCTCCTCCCCCATCTCGCCATTTCAATTCCACCAACGCGAGAGAGAGAGAGATCGAGAAGCAAACCCGACCCGACAACCAATTTCTCCGACCCAATTCGCCTCCTCCAAGATTCTTGCGCCACCGCCGAGGAGGCGATCGGTTCTTGATTTCTTGAATTCGATTCTTGAAGAATTCTTGGGGGTGGTATGAGGTCGTCGGCGACGGCGGCGGCGGAGGCGGCGGAGGCTGACCAGTCGAGGGCGATGTACGAGCTGTGCGCGCTGCTGCTGACGGTGCTCCGGGCGTGGCCGGAGGAAGGGGGCGGGCGGGGGGCGGCGGCGTGGCCGCGGCAGGTGACGGCGGCGGGGGTGGCGTCGATGCTGCTGGGGGCGTCGGTGGCGCTGATGCTGTGCGGGTCGGTGACCTTCATGCTGGGGTTCTTCCTCATGCCCTGGGTCATCGGCCTCGCCTGCGTCTTCCTCCTCGTCGGGTTCGTCACCAACCTGTCCGTGATCTGGAGGGCCATCCTCTGGCCCGCCTCGTGCTCCTCCTCGCCCAAGGTGGCCTCCACATGTACGTGATCTTGGCCGTTTAGGAGTAGGGCTCCTACATGTTTGGGGACAAAAGGGAAGAGGCTCCTCTTTTTACATGTTTGGGTTAGTCAGGATTGGGGAATTCACTGTGGATTCATGCGTAATTTGGGGGGTAAATATGATGATTGGTGGTGTTTCTTGGCTTTATCAGAGTTCAAAATGCGCTAAATTGAGCGCCTTTGCTTAAATTATGCCCAATTGTGAAGCATCTGTCATACTTTGGGTGCTTCTCTGAAAATTGAGATATGTGTAGCTTCTGTATTTAAATTGTGGTTTTATTAGGATTGTTGCGTTGATTTAGTTCGGGAGGACATCATTCCAAATAATGTGAGCAGCTTGTTGTCGTAGTTAAAATAAAATTGACGCGATGGTAAGAAGTGGAAAGGGTCAGAATTGGTGGTTGTCGATGCAATCCAGATGATTCTCAAATGTTTTGGATCTCTAATTTGATGTAGAGAGGCTGGCTATAGCTTCAGGTTGATGAAATTCGATATTGAAAGGGCGTAAGGGACTAAATTGCGTCGGTGAGCACCGACCATATGAACTGAAAGGGGGAAAGGAGCTGTAAACATATAGAGTCAAAAAGGGCCATATAACAATGAAATGGATGCCTGAGCGCTTTCGTGCTTGCTAAGTAGGAGACCAGAAAGCTTAAGTTTATAACTTTGTTCGTTTCGACGGGATACAAGCTGAGTTTCTTAGGAACAAAGGAGCTTGAGAGGAACTAAATGCAACTAGTGACAATCGAGAAGAAGAGCTTTCTTAGATTCCCAGGAAGAATAGAATAGCCTAGTTAAGCTTGACCTAGTGTATTCCTTTCACCTTTCAAGATTTCACTGTCAATGCATCTAGAAAAATTGATATAGCTAGTTAATTGTTGAAATTAGAAAATACTTTATATGGGTGTAATACAGGTGAAGCTGAACCTCAATTTCCCTGCCAACCTTGATGTGCTTGTTCCTCACAAACGAACAGTATTCTACATCAATTTTCTGTGGTAAATTAATGCGGATGTATTAAGTTCACCATCAAGATCAGCTATTACAACCCAAATAAGTTCAAATATGATATCAGTGCAATTCCTTTCTTGGTCCTACTGACTGTAAACAGTATCATGCCTATATCACTATTATCATCACTATCATGCTTTTAAGAGTTGTTGTCTTTATTGCATTCATACCTATTTCCAACGTTATCGTATAACAAGAGCTTTGGATTGTATCTTCTGGCAGGGTATATATTTTCCAAGCCTCCATTCATGTCCTACATGTGAAGTTGAATGAGAAGTAGGTTCTCATGGAGGTGTATACAAGCAGAAGAGTTTGGGCGGCATTACGTTGTTGCCATCCTATCTTTTCCTTCCCGGACAACATTTTTACCATGTAACGCCGCAACAAGCTTAGATGGTTTTATATATTATAATTAGGATGGCAAGCTTTAACAGAAAACTTTGTACATATGGAAAAAGAACGGTTTGGTTTTATTATTTATTACATCTATCCTA]
[+] EMBL AU102027 [ CGGCGGAGGCGGCGGAGGCTGACCAGTCGAGGGCGATGTACGAGCTGTGCGCGCTGCTGCTGACGGTGCTCCGGGCGTGGCCGGAGGAAGGGGGCGGGCGTGGGGCGNCGNCGTGGCC CGGCAGGTGACGGCGGCGNGGGTGGCGTCGATGCTGCTGGGGGCGTCGNTGGCGCTGATGCTGTGCGGGTCGNTGACCTTCATGCTGGGGTTCTTCCTCATGCCCTGGGTCATCGACCTCGTCTGCGTCTTCCTCCTCGTCGGGTTCGTCACCAACCTNTCCGTGATCTNGAGGGCCATCCTCTGGCCNGTCTtg ]
consensusID : consensus_4422#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 413 fasta sequence
[GCACATCNGTGGCTCCATCACATCAGCCCAAGGTGGCCTCCACATGGTATATATTTTCCAAGCCTCCAATTCATGTCCTACATGTGAAGTTGAATGAGAAGTAGGTTCTCATGGAGGTGTATACAAGCAGAAGAGTTTNGGGCGGCATTACGTTGTTGCCATCCTATCTTTTCCTTCCCGGACAACATTTTTACCATGTAACGCCGCAACAAGCTTAGATGGTTTTATATATTATAATTAGGATGGCAAGCTTTAACAGAAAACTTTGTACATATGGAAAAAGAACGGTTTGGTTTTATTATTTATTACATCTATCCTATAATTGTTTCAGAATTGGAGAGTTCTTTTCCTTCAAGGTTTGTATCTTGTTTTTGCTCAACTGGCACTGTCAGACTGATTGTCTCCAAAAAAAA]
[+] EMBL AU102028 [GCACATCNGTGGCTCCATCACATCAGCCCAAGGTGGCCTCCACATGGTATATATTTTCCAAGCCTCCAATTCATGTCCTACATGTGAAGTTGAATGAGAAGTAGGTTCTCATGGAGGTGTATACAAGCAGAAGAGTTTNGGGCGGCATTACGTTGTTGCCATCCTATCTTTTCCTTCCCGGACAACATTTTTACCATGTAACGCCGCAACAAGCTTAGATGGTTTTATATATTATAATTAGGATGGCAAGCTTTAACAGAAAACTTTGTACATATGGAAAAAGAACGGTTTGGTTTTATTATTTATTACATCTATCCTATAATTGTTTCAGAATTGGAGAGTTCTTTTCCTTCAAGGTTTGTATCTTGTTTTTGCTCAACTGGCACTGTCAGACTGATTGTCTCCAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4422#0 TTTCCCATTCCCCCCTCTATTTCAACATCTCCCCCCATGTCTCTCCTCCCCCATCTCGCC 60
consensus_4422#1 ------------------------------------------------------------
consensus_4422#0 ATTTCAATTCCACCAACGCGAGAGAGAGAGAGATCGAGAAGCAAACCCGACCCGACAACC 120
consensus_4422#1 ------------------------------------------------------------
consensus_4422#0 AATTTCTCCGACCCAATTCGCCTCCTCCAAGATTCTTGCGCCACCGCCGAGGAGGCGATC 180
consensus_4422#1 ------------------------------------------------------------
consensus_4422#0 GGTTCTTGATTTCTTGAATTCGATTCTTGAAGAATTCTTGGGGGTGGTATGAGGTCGTCG 240
consensus_4422#1 ------------------------------------------------------------
consensus_4422#0 GCGACGGCGGCGGCGGAGGCGGCGGAGGCTGACCAGTCGAGGGCGATGTACGAGCTGTGC 300
consensus_4422#1 ------------------------------------------------------------
consensus_4422#0 GCGCTGCTGCTGACGGTGCTCCGGGCGTGGCCGGAGGAAGGGGGCGGGCGGGGGGCGGCG 360
consensus_4422#1 ------------------------------------------------------------
consensus_4422#0 GCGTGGCCGCGGCAGGTGACGGCGGCGGGGGTGGCGTCGATGCTGCTGGGGGCGTCGGTG 420
consensus_4422#1 ------------------------------------------------------------
consensus_4422#0 GCGCTGATGCTGTGCGGGTCGGTGACCTTCATGCTGGGGTTCTTCCTCATGCCCTGGGTC 480
consensus_4422#1 ------------------------------------------------------------
consensus_4422#0 ATCGGCCTCGCCTGCGTCTTCCTCCTCGTCGGGTTCGTCACCAACCTGTCCGTGATCTGG 540
consensus_4422#1 ------------------------------------------------------------
consensus_4422#0 AGGGCCATCCTCTGGCCCGCCTCGTGCTCCTCCTCGCCCAAGGTGGCCTCCACATGTACG 600
consensus_4422#1 ------------------------------------------------------------
consensus_4422#0 TGATCTTGGCCGTTTAGGAGTAGGGCTCCTACATGTTTGGGGACAAAAGGGAAGAGGCTC 660
consensus_4422#1 ------------------------------------------------------------
consensus_4422#0 CTCTTTTTACATGTTTGGGTTAGTCAGGATTGGGGAATTCACTGTGGATTCATGCGTAAT 720
consensus_4422#1 ------------------------------------------------------------
consensus_4422#0 TTGGGGGGTAAATATGATGATTGGTGGTGTTTCTTGGCTTTATCAGAGTTCAAAATGCGC 780
consensus_4422#1 ------------------------------------------------------------
consensus_4422#0 TAAATTGAGCGCCTTTGCTTAAATTATGCCCAATTGTGAAGCATCTGTCATACTTTGGGT 840
consensus_4422#1 ------------------------------------------------------------
consensus_4422#0 GCTTCTCTGAAAATTGAGATATGTGTAGCTTCTGTATTTAAATTGTGGTTTTATTAGGAT 900
consensus_4422#1 ------------------------------------------------------------
consensus_4422#0 TGTTGCGTTGATTTAGTTCGGGAGGACATCATTCCAAATAATGTGAGCAGCTTGTTGTCG 960
consensus_4422#1 ------------------------------------------------------------
consensus_4422#0 TAGTTAAAATAAAATTGACGCGATGGTAAGAAGTGGAAAGGGTCAGAATTGGTGGTTGTC 1020
consensus_4422#1 ------------------------------------------------------------
consensus_4422#0 GATGCAATCCAGATGATTCTCAAATGTTTTGGATCTCTAATTTGATGTAGAGAGGCTGGC 1080
consensus_4422#1 ------------------------------------------------------------
consensus_4422#0 TATAGCTTCAGGTTGATGAAATTCGATATTGAAAGGGCGTAAGGGACTAAATTGCGTCGG 1140
consensus_4422#1 ------------------------------------------------------------
consensus_4422#0 TGAGCACCGACCATATGAACTGAAAGGGGGAAAGGAGCTGTAAACATATAGAGTCAAAAA 1200
consensus_4422#1 ------------------------------------------------------------
consensus_4422#0 GGGCCATATAACAATGAAATGGATGCCTGAGCGCTTTCGTGCTTGCTAAGTAGGAGACCA 1260
consensus_4422#1 ------------------------------------------------------------
consensus_4422#0 GAAAGCTTAAGTTTATAACTTTGTTCGTTTCGACGGGATACAAGCTGAGTTTCTTAGGAA 1320
consensus_4422#1 ------------------------------------------------------------
consensus_4422#0 CAAAGGAGCTTGAGAGGAACTAAATGCAACTAGTGACAATCGAGAAGAAGAGCTTTCTTA 1380
consensus_4422#1 ------------------------------------------------------------
consensus_4422#0 GATTCCCAGGAAGAATAGAATAGCCTAGTTAAGCTTGACCTAGTGTATTCCTTTCACCTT 1440
consensus_4422#1 ------------------------------------------------------------
consensus_4422#0 TCAAGATTTCACTGTCAATGCATCTAGAAAAATTGATATAGCTAGTTAATTGTTGAAATT 1500
consensus_4422#1 ------------------------------------------------------------
consensus_4422#0 AGAAAATACTTTATATGGGTGTAATACAGGTGAAGCTGAACCTCAATTTCCCTGCCAACC 1560
consensus_4422#1 ------------------------------------------------------------
consensus_4422#0 TTGATGTGCTTGTTCCTCACAAACGAACAGTATTCTACATCAATTTTCTGTGGTAAATTA 1620
consensus_4422#1 ------------------------------------------------------------
consensus_4422#0 ATGCGGATGTATTAAGTTCACCATCAAGATCAGCTATTACAACCCAAATAAGTTCAAATA 1680
consensus_4422#1 ------------------------------------------------------------
consensus_4422#0 TGATATCAGTGCAATTCCTTTCTTGGTCCTACTGACTGTAAACAGTATCATGCCTATATC 1740
consensus_4422#1 ------------------------------------------------------------
consensus_4422#0 ACTATTATCATCACTATCATGCTTTTAAGAGTTGTTGTCTTTATTGCATTCATACCTATT 1800
consensus_4422#1 -----------------------------------------------------GCACATC 7
* **
consensus_4422#0 TCCAACGTTATCGTATAACAAGAGCTTTGGATTGTATCTTCTGGCAGGGTATATATTTTC 1860
consensus_4422#1 NGTGGCTCCATC-----ACATCAGCCCAAGGTGGCCTCC----ACATGGTATATATTTTC 58
* *** *** *** * * * ** ** *************
consensus_4422#0 CAAGCCTCCA-TTCATGTCCTACATGTGAAGTTGAATGAGAAGTAGGTTCTCATGGAGGT 1919
consensus_4422#1 CAAGCCTCCAATTCATGTCCTACATGTGAAGTTGAATGAGAAGTAGGTTCTCATGGAGGT 118
********** *************************************************
consensus_4422#0 GTATACAAGCAGAAGAGTTTGGG-CGGCATTACGTTGTTGCCATCCTATCTTTTCCTTCC 1978
consensus_4422#1 GTATACAAGCAGAAGAGTTTNGGGCGGCATTACGTTGTTGCCATCCTATCTTTTCCTTCC 178
******************** ** ************************************
consensus_4422#0 CGGACAACATTTTTACCATGTAACGCCGCAACAAGCTTAGATGGTTTTATATATTATAAT 2038
consensus_4422#1 CGGACAACATTTTTACCATGTAACGCCGCAACAAGCTTAGATGGTTTTATATATTATAAT 238
************************************************************
consensus_4422#0 TAGGATGGCAAGCTTTAACAGAAAACTTTGTACATATGGAAAAAGAACGGTTTGGTTTTA 2098
consensus_4422#1 TAGGATGGCAAGCTTTAACAGAAAACTTTGTACATATGGAAAAAGAACGGTTTGGTTTTA 298
************************************************************
consensus_4422#0 TTATTTATTACATCTATCCTA--------------------------------------- 2119
consensus_4422#1 TTATTTATTACATCTATCCTATAATTGTTTCAGAATTGGAGAGTTCTTTTCCTTCAAGGT 358
*********************
consensus_4422#0 -------------------------------------------------------
consensus_4422#1 TTGTATCTTGTTTTTGCTCAACTGGCACTGTCAGACTGATTGTCTCCAAAAAAAA 413
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||