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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4429#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1588 fasta sequence
[CCTTCGTCCTCCACTTCCCCCTCCCACCCAAAGACGCGCAGCCAAATCCGACGCGTGCGGCGGTGCGACGCCGGCCGGGGTGGGGGACGCCATGAGCCGCACGCTCCTCTCCCACATCCTCCACCGCCCGCCGCCGCTCCTCGCGTCGAGGGGTGGTGGGCGAGGAGGAGCGCTCCCGTCCCGCCTCCGCACTCTCCGACTCAACTGCAGCGTGGCTGAAGCGACTGCCTCCGGCGACGAGGCGCCTGCTCCTCCGGCTAGGAAGAAAAGAGTAGTTTCTGGTGTACAGCCAACAGGATTGGTACACCTTGGAAATTATCTTGGTGCTATTAAGAATTGGGTTTCACTTCAGGATCTATACGAGACATTATTTTTCATTGTGGACTTGCATGCGATTACGTTACCATATGAAGCACCACAGTTGTCAAAAGCAACAAGAAGCACTGCTGCAATATATCTGGCTTGTGGCATTGACAGTTCAAAGGCTTCTATATTTGTACAGTCTCATGTCCGTGCTCATGTTGAGTTGATGTGGCTTCTGAGTTCTTCTACTCCTATTGGTTGGCTCAACAGAATGATCCAATTCAAAGAGAAGTCACGCAAGGCGGGTGATGAAAATGTTGGAGTGGCACTTTTGACTTATCCTGTTTTAATGGCTTCTGACATTCTCCTGTACCAGTCCGATCTGGTGCCTGTTGGTGAAGATCAGACACAACATTTGGAATTAACTCGCGAAATCGCTGAGCGTGTAAATAATCTATACGGTGGAAGGAAATGGAAGAAAATGGGAGGGAGAGGTGGTTCACTATTTAAGGTTCCTGAAGCCCTTATACCTCCAGCAGGGGCTCGTGTTATGTCCTTAACCGACGGTCTCTCCAAGATGTCGAAGTCTGCTCCTTCAGATCAGTCTCGTATTAACCTTCTTGATCCAAAAGATGTTATCATGAATAAGATTAAGCGCTGCAAAACTGACTCGTTCCCAGGCTTGGAATTTGACAA-CCCAGAGAGGCCTGAATGCAACAATCTTCTCTCGATCTA-CCAGATTATTACA-GGGAAAACTAAAGAGG-AAGTTATCAGAGAATGCGAAAATATGAACTGGGGGTCGTTCAAAACAACTCTTACAGATGCATTGATTGATCATCTGCAACCTATCCAGGCCCGCTACGAGGAGATAATGTCTGATCCTGGTTATTTGGATGGTGTTCTCTTAGAAGGATCAGGAAAAGCTGCTGAGATAGCAGACATCACCCTCAACAACGTATACCAAGCCATGGGTTTCTTGCGCAGATAGCATGCGCTTCAACCATCCGGAACATTTCAAAGATTTTTTACGAGGTCAAAAAGTTTTGTTCGGTCTGTGTTACTTTGTTCCCCTTACCATTGGCCTTAAGATTGTTTTTATGCACATAT-TGGCCTTACTAGATTTACAAGAGCTCCATTCTCCAAATTTTATAGGAATATCAATCGTTTTGCTTGATGTTACGTAGTAGCCTCTTTGTTTCTGGCTCTACAAAAACCTGTATGGT-CCATTAAATTTCTCATCTTAATGACACTGATTTCTTTGAAGTTTTGAGTTCCAAAAAAAAAA]
[+] EMBL AK069114 [CCTTCGTCCTCCACTTCCCCCTCCCACCCAAAGACGCGCAGCCAAATCCGACGCGTGCGGCGGTGCGACGCCGGCCGGGGTGGGGGACGCCATGAGCCGCACGCTCCTCTCCCACATCCTCCACCGCCCGCCGCCGCTCCTCGCGTCGAGGGGTGGTGGGCGAGGAGGAGCGCTCCCGTCCCGCCTCCGCACTCTCCGACTCAACTGCAGCGTGGCTGAAGCGACTGCCTCCGGCGACGAGGCGCCTGCTCCTCCGGCTAGGAAGAAAAGAGTAGTTTCTGGTGTACAGCCAACAGGATTGGTACACCTTGGAAATTATCTTGGTGCTATTAAGAATTGGGTTTCACTTCAGGATCTATACGAGACATTATTTTTCATTGTGGACTTGCATGCGATTACGTTACCATATGAAGCACCACAGTTGTCAAAAGCAACAAGAAGCACTGCTGCAATATATCTGGCTTGTGGCATTGACAGTTCAAAGGCTTCTATATTTGTACAGTCTCATGTCCGTGCTCATGTTGAGTTGATGTGGCTTCTGAGTTCTTCTACTCCTATTGGTTGGCTCAACAGAATGATCCAATTCAAAGAGAAGTCACGCAAGGCGGGTGATGAAAATGTTGGAGTGGCACTTTTGACTTATCCTGTTTTAATGGCTTCTGACATTCTCCTGTACCAGTCCGATCTGGTGCCTGTTGGTGAAGATCAGACACAACATTTGGAATTAACTCGCGAAATCGCTGAGCGTGTAAATAATCTATACGGTGGAAGGAAATGGAAGAAAATGGGAGGGAGAGGTGGTTCACTATTTAAGGTTCCTGAAGCCCTTATACCTCCAGCAGGGGCTCGTGTTATGTCCTTAACCGACGGTCTCTCCAAGATGTCGAAGTCTGCTCCTTCAGATCAGTCTCGTATTAACCTTCTTGATCCAAAAGATGTTATCATGAATAAGATTAAGCGCTGCAAAACTGACTCGTTCCCAGGCTTGGAATTTGACAA CCCAGAGAGGCCTGAATGCAACAATCTTCTCTCGATCTA CCAGATTATTACA GGGAAAACTAAAGAGG AAGTTATCAGAGAATGCGAAAATATGAACTGGGGGTCGTTCAAAACAACTCTTACAGATGCATTGATTGATCATCTGCAACCTATCCAGGCCCGCTACGAGGAGATAATGTCTGATCCTGGTTATTTGGATGGTGTTCTCTTAGAAGGATCAGGAAAAGCTGCTGAGATAGCAGACATCACCCTCAACAACGTATACCAAGCCATGGGTTTCTTGCGCAGATAGCATGCGCTTCAACCATCCGGAACATTTCAAAGATTTTTTACGAGGTCAAAAAGTTTTGTTCGGTCTGTGTTACTTTGTTCCCCTTACCATTGGCCTTAAGATTGTTTTTATGCACATAT TGGCCTTACTAGATTTACAAGAGCTCCATTCTCCAAATTTTATAGGAATATCAATCGTTTTGCTTGATGTTACGTAGTAGCCTCTTTGTTTCTGGCTCTACAAAAACCTGTATGGT CCATTAAATTTCTCATCTTAATGACACT ]
[+] EMBL BI806181 [ TTGGCAACCCCAGAGAGGCCTGAATGC AC ATCTTCTCTCGATCTACCCAGATTATTACAGGGGAAAACTAAAGAGGAAAGTTATCAGAGAATGCGATAATATGAACTGGGGGTCGTTC AAACAACTCTTACAGATGC TTGATTGATCATCTGCAACCTATCCAGGTCCGCTACGAGGAGATAATGTCTGATCCTGGTTATTTGGATGGTGTTCTCTTAGAAGGATCCGGAAAAGCTGCTGAGATAGCAGACATCACCCTCAACCACGTATACCCAGCCCTGGGTTTCTTGCGCAGATAGCATGCGCTTCAACCATCCGGAACCTTTC AAGATTTTTTACGAGGTCCAAAAGTTTTGTTCGGTCTGTGTTACTTTGTTCCCCTTACCCTTGGCCTTAAGATTGTTTTTATGCACATATGTGGCCTTACTAGATTTACCAGAGCTCCCTTCTCCCAATTTTATAGGAATATCCATCGTTTTGCTTGATGTTACGTAGTAGCCTCTTTGTTTCTGGCTCTACCAAAACCTGTATGGTCCCATTAAATTTCTCATCTTAATGACCCTGATTTCTTTGAAGTTTTGAGTTCCAAAAAAAAAA]
consensusID : consensus_4429#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1543 fasta sequence
[CTTCGTCCTCCACTTCCCCCTCCCACCCAAAGACGCGCAGCCAAATCCGACGCGTGCGGCGGTGCGACGCCGGCCGGGGTGGGGGACGCCATGAGCCGCACGCTCCTCTCCCACATCCTCCACCGCCCGCCGCCGCTCCTCGCGTCGAGGGGTGGTGGGCGAGGAGGAGCGCTCCCGTCCCGCCTCCGCACTCTCCGACTCAACTGCAGCGTGGCTGAAGCGACTGCCTCCGGCGACGAGGCGCCTGCTCCTCCGGCTAGGAAGAAAAGAGTAGTTTCTGGTGTACAGCCAACAGGATTGGTACACCTTGGAAATTATCTTGGTGCTATTAAGAATTGGGTTCCACTTCAGGATCTATACGAGACATTATTTTTCATTGTGGACTTGCATGCGATTACGTTACCATATGAAGCACCACAGTTGTCAAAAGCAACAAGAAGCACTGCTGCAATATATCTGGCTTGTGGCATTGACAGTTCAAAGTCTCATGTCCGTGCTCATGTTGAGTTGATGTGGCTTCTGAGTTCTTCTACTCCTATTGGTTGGCTCAACAGAATGATCCAATTCAAAGAGAAGTCACGCAAGGCGGGTGATGAAAATGTTGGAGTGGCACTTTTGACTTATCCTGTTTTAATGGCTTCTGACATTCTCCTGTACCAGTCCGATCTGGTGCCTGTTGGTGAAGATCAGACACAACATTTGGAATTAACTCGCGAAATCGCTGAGCGTGTAAATAATCTATACGGTGGAAGGAAATGGAAGAAAATGGGAGGGAGAGGTGGTTCACTATTTAAGGTTCCTGAAGCCCTTATACCTCCAGCAGGGGCTCGTGTTATGTCCTTAACCGACGGTCTCTCCAAGATGTCGAAGTCTGCTCCTTCAGATCAGTCTCGTATTAACCTTCTTGATCCAAAAGATGTTATCATGAATAAGATTAAGCGCTGCAAAACTGACTCGTTCCCAGGCTTGGAATTTGACAACCCAGAGAGGCCTGAATGCAACAATCTTCTCTCGATCTACCAGATTATTACAGGGAAAACTAAAGAGGAAGTTATCAGAGAATGCGAAAATATGAACTGGGGGTCGTTCAAAACAACTCTTACAGATGCATTGATTGATCATCTGCAACCTATCCAGGTCCGCTACGAGGAGATAATGTCTGATCCTGGTTATTTGGATGGTGTTCTCTTAGAAGGATCAGGAAAAGCTGCTGAGATAGCAGACATCACCCTCAACAACGTATACCAAGCCATGGGTTTCTTGCGCAGATAGCATGCGCTTCAACCATCCGGAACATTTCAAAGATTTTTTACGAGGTCAAAAAGTTTTGTTCGGTCTGTGTTACTTTGTTCCCCTTACCATTGGCCTTAAGATTGTTTTTATGCACATATTGGCCTTACTAGATTTACAAGAGCTCCATTCTCCAAATTTTATAGGAATATCAATCGTTTTGCTTGATGTTACGTAGTAGCCTCTTTGTTTCTGGCTCTACAAAAACCTGTATGGTCCATTAAATTTCTCATCTTAATGACACTGATTTCTT]
[+] EMBL AK059177 [CTTCGTCCTCCACTTCCCCCTCCCACCCAAAGACGCGCAGCCAAATCCGACGCGTGCGGCGGTGCGACGCCGGCCGGGGTGGGGGACGCCATGAGCCGCACGCTCCTCTCCCACATCCTCCACCGCCCGCCGCCGCTCCTCGCGTCGAGGGGTGGTGGGCGAGGAGGAGCGCTCCCGTCCCGCCTCCGCACTCTCCGACTCAACTGCAGCGTGGCTGAAGCGACTGCCTCCGGCGACGAGGCGCCTGCTCCTCCGGCTAGGAAGAAAAGAGTAGTTTCTGGTGTACAGCCAACAGGATTGGTACACCTTGGAAATTATCTTGGTGCTATTAAGAATTGGGTTCCACTTCAGGATCTATACGAGACATTATTTTTCATTGTGGACTTGCATGCGATTACGTTACCATATGAAGCACCACAGTTGTCAAAAGCAACAAGAAGCACTGCTGCAATATATCTGGCTTGTGGCATTGACAGTTCAAAGTCTCATGTCCGTGCTCATGTTGAGTTGATGTGGCTTCTGAGTTCTTCTACTCCTATTGGTTGGCTCAACAGAATGATCCAATTCAAAGAGAAGTCACGCAAGGCGGGTGATGAAAATGTTGGAGTGGCACTTTTGACTTATCCTGTTTTAATGGCTTCTGACATTCTCCTGTACCAGTCCGATCTGGTGCCTGTTGGTGAAGATCAGACACAACATTTGGAATTAACTCGCGAAATCGCTGAGCGTGTAAATAATCTATACGGTGGAAGGAAATGGAAGAAAATGGGAGGGAGAGGTGGTTCACTATTTAAGGTTCCTGAAGCCCTTATACCTCCAGCAGGGGCTCGTGTTATGTCCTTAACCGACGGTCTCTCCAAGATGTCGAAGTCTGCTCCTTCAGATCAGTCTCGTATTAACCTTCTTGATCCAAAAGATGTTATCATGAATAAGATTAAGCGCTGCAAAACTGACTCGTTCCCAGGCTTGGAATTTGACAACCCAGAGAGGCCTGAATGCAACAATCTTCTCTCGATCTACCAGATTATTACAGGGAAAACTAAAGAGGAAGTTATCAGAGAATGCGAAAATATGAACTGGGGGTCGTTCAAAACAACTCTTACAGATGCATTGATTGATCATCTGCAACCTATCCAGGTCCGCTACGAGGAGATAATGTCTGATCCTGGTTATTTGGATGGTGTTCTCTTAGAAGGATCAGGAAAAGCTGCTGAGATAGCAGACATCACCCTCAACAACGTATACCAAGCCATGGGTTTCTTGCGCAGATAGCATGCGCTTCAACCATCCGGAACATTTCAAAGATTTTTTACGAGGTCAAAAAGTTTTGTTCGGTCTGTGTTACTTTGTTCCCCTTACCATTGGCCTTAAGATTGTTTTTATGCACATATTGGCCTTACTAGATTTACAAGAGCTCCATTCTCCAAATTTTATAGGAATATCAATCGTTTTGCTTGATGTTACGTAGTAGCCTCTTTGTTTCTGGCTCTACAAAAACCTGTATGGTCCATTAAATTTCTCATCTTAATGACACTGATTTCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4429#0 CCTTCGTCCTCCACTTCCCCCTCCCACCCAAAGACGCGCAGCCAAATCCGACGCGTGCGG 60
consensus_4429#1 -CTTCGTCCTCCACTTCCCCCTCCCACCCAAAGACGCGCAGCCAAATCCGACGCGTGCGG 59
***********************************************************
consensus_4429#0 CGGTGCGACGCCGGCCGGGGTGGGGGACGCCATGAGCCGCACGCTCCTCTCCCACATCCT 120
consensus_4429#1 CGGTGCGACGCCGGCCGGGGTGGGGGACGCCATGAGCCGCACGCTCCTCTCCCACATCCT 119
************************************************************
consensus_4429#0 CCACCGCCCGCCGCCGCTCCTCGCGTCGAGGGGTGGTGGGCGAGGAGGAGCGCTCCCGTC 180
consensus_4429#1 CCACCGCCCGCCGCCGCTCCTCGCGTCGAGGGGTGGTGGGCGAGGAGGAGCGCTCCCGTC 179
************************************************************
consensus_4429#0 CCGCCTCCGCACTCTCCGACTCAACTGCAGCGTGGCTGAAGCGACTGCCTCCGGCGACGA 240
consensus_4429#1 CCGCCTCCGCACTCTCCGACTCAACTGCAGCGTGGCTGAAGCGACTGCCTCCGGCGACGA 239
************************************************************
consensus_4429#0 GGCGCCTGCTCCTCCGGCTAGGAAGAAAAGAGTAGTTTCTGGTGTACAGCCAACAGGATT 300
consensus_4429#1 GGCGCCTGCTCCTCCGGCTAGGAAGAAAAGAGTAGTTTCTGGTGTACAGCCAACAGGATT 299
************************************************************
consensus_4429#0 GGTACACCTTGGAAATTATCTTGGTGCTATTAAGAATTGGGTTTCACTTCAGGATCTATA 360
consensus_4429#1 GGTACACCTTGGAAATTATCTTGGTGCTATTAAGAATTGGGTTCCACTTCAGGATCTATA 359
******************************************* ****************
consensus_4429#0 CGAGACATTATTTTTCATTGTGGACTTGCATGCGATTACGTTACCATATGAAGCACCACA 420
consensus_4429#1 CGAGACATTATTTTTCATTGTGGACTTGCATGCGATTACGTTACCATATGAAGCACCACA 419
************************************************************
consensus_4429#0 GTTGTCAAAAGCAACAAGAAGCACTGCTGCAATATATCTGGCTTGTGGCATTGACAGTTC 480
consensus_4429#1 GTTGTCAAAAGCAACAAGAAGCACTGCTGCAATATATCTGGCTTGTGGCATTGACAGTTC 479
************************************************************
consensus_4429#0 AAAGGCTTCTATATTTGTACAGTCTCATGTCCGTGCTCATGTTGAGTTGATGTGGCTTCT 540
consensus_4429#1 AAAG------------------TCTCATGTCCGTGCTCATGTTGAGTTGATGTGGCTTCT 521
**** **************************************
consensus_4429#0 GAGTTCTTCTACTCCTATTGGTTGGCTCAACAGAATGATCCAATTCAAAGAGAAGTCACG 600
consensus_4429#1 GAGTTCTTCTACTCCTATTGGTTGGCTCAACAGAATGATCCAATTCAAAGAGAAGTCACG 581
************************************************************
consensus_4429#0 CAAGGCGGGTGATGAAAATGTTGGAGTGGCACTTTTGACTTATCCTGTTTTAATGGCTTC 660
consensus_4429#1 CAAGGCGGGTGATGAAAATGTTGGAGTGGCACTTTTGACTTATCCTGTTTTAATGGCTTC 641
************************************************************
consensus_4429#0 TGACATTCTCCTGTACCAGTCCGATCTGGTGCCTGTTGGTGAAGATCAGACACAACATTT 720
consensus_4429#1 TGACATTCTCCTGTACCAGTCCGATCTGGTGCCTGTTGGTGAAGATCAGACACAACATTT 701
************************************************************
consensus_4429#0 GGAATTAACTCGCGAAATCGCTGAGCGTGTAAATAATCTATACGGTGGAAGGAAATGGAA 780
consensus_4429#1 GGAATTAACTCGCGAAATCGCTGAGCGTGTAAATAATCTATACGGTGGAAGGAAATGGAA 761
************************************************************
consensus_4429#0 GAAAATGGGAGGGAGAGGTGGTTCACTATTTAAGGTTCCTGAAGCCCTTATACCTCCAGC 840
consensus_4429#1 GAAAATGGGAGGGAGAGGTGGTTCACTATTTAAGGTTCCTGAAGCCCTTATACCTCCAGC 821
************************************************************
consensus_4429#0 AGGGGCTCGTGTTATGTCCTTAACCGACGGTCTCTCCAAGATGTCGAAGTCTGCTCCTTC 900
consensus_4429#1 AGGGGCTCGTGTTATGTCCTTAACCGACGGTCTCTCCAAGATGTCGAAGTCTGCTCCTTC 881
************************************************************
consensus_4429#0 AGATCAGTCTCGTATTAACCTTCTTGATCCAAAAGATGTTATCATGAATAAGATTAAGCG 960
consensus_4429#1 AGATCAGTCTCGTATTAACCTTCTTGATCCAAAAGATGTTATCATGAATAAGATTAAGCG 941
************************************************************
consensus_4429#0 CTGCAAAACTGACTCGTTCCCAGGCTTGGAATTTGACAACCCAGAGAGGCCTGAATGCAA 1020
consensus_4429#1 CTGCAAAACTGACTCGTTCCCAGGCTTGGAATTTGACAACCCAGAGAGGCCTGAATGCAA 1001
************************************************************
consensus_4429#0 CAATCTTCTCTCGATCTACCAGATTATTACAGGGAAAACTAAAGAGGAAGTTATCAGAGA 1080
consensus_4429#1 CAATCTTCTCTCGATCTACCAGATTATTACAGGGAAAACTAAAGAGGAAGTTATCAGAGA 1061
************************************************************
consensus_4429#0 ATGCGAAAATATGAACTGGGGGTCGTTCAAAACAACTCTTACAGATGCATTGATTGATCA 1140
consensus_4429#1 ATGCGAAAATATGAACTGGGGGTCGTTCAAAACAACTCTTACAGATGCATTGATTGATCA 1121
************************************************************
consensus_4429#0 TCTGCAACCTATCCAGGCCCGCTACGAGGAGATAATGTCTGATCCTGGTTATTTGGATGG 1200
consensus_4429#1 TCTGCAACCTATCCAGGTCCGCTACGAGGAGATAATGTCTGATCCTGGTTATTTGGATGG 1181
***************** ******************************************
consensus_4429#0 TGTTCTCTTAGAAGGATCAGGAAAAGCTGCTGAGATAGCAGACATCACCCTCAACAACGT 1260
consensus_4429#1 TGTTCTCTTAGAAGGATCAGGAAAAGCTGCTGAGATAGCAGACATCACCCTCAACAACGT 1241
************************************************************
consensus_4429#0 ATACCAAGCCATGGGTTTCTTGCGCAGATAGCATGCGCTTCAACCATCCGGAACATTTCA 1320
consensus_4429#1 ATACCAAGCCATGGGTTTCTTGCGCAGATAGCATGCGCTTCAACCATCCGGAACATTTCA 1301
************************************************************
consensus_4429#0 AAGATTTTTTACGAGGTCAAAAAGTTTTGTTCGGTCTGTGTTACTTTGTTCCCCTTACCA 1380
consensus_4429#1 AAGATTTTTTACGAGGTCAAAAAGTTTTGTTCGGTCTGTGTTACTTTGTTCCCCTTACCA 1361
************************************************************
consensus_4429#0 TTGGCCTTAAGATTGTTTTTATGCACATATTGGCCTTACTAGATTTACAAGAGCTCCATT 1440
consensus_4429#1 TTGGCCTTAAGATTGTTTTTATGCACATATTGGCCTTACTAGATTTACAAGAGCTCCATT 1421
************************************************************
consensus_4429#0 CTCCAAATTTTATAGGAATATCAATCGTTTTGCTTGATGTTACGTAGTAGCCTCTTTGTT 1500
consensus_4429#1 CTCCAAATTTTATAGGAATATCAATCGTTTTGCTTGATGTTACGTAGTAGCCTCTTTGTT 1481
************************************************************
consensus_4429#0 TCTGGCTCTACAAAAACCTGTATGGTCCATTAAATTTCTCATCTTAATGACACTGATTTC 1560
consensus_4429#1 TCTGGCTCTACAAAAACCTGTATGGTCCATTAAATTTCTCATCTTAATGACACTGATTTC 1541
************************************************************
consensus_4429#0 TTTGAAGTTTTGAGTTCCAAAAAAAAAA 1588
consensus_4429#1 TT-------------------------- 1543
**
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||