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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4458#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1347 fasta sequence
[AAACCCTACCGCCGCCGCCGCTTCCTCTCCTCTTCTTCTTCCACCACCGGAGCAGAGGAAACCAAACCATGGCCCCCATCGTGCGCCCCTCCAAATCTGGCTCCAACTCCGATTCCGATTCCCACGCTCACCACCCTCCTCCTGAGCCGCCGCAAGAAAGCTCTGACGGCGAGGACTTGGAGCTCGAGTCCTCCGAGGAACTTGATTCGCATGGGGCGCCCACCAAGAAAGCCCCCTTCGTCGCCCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCCCAGCAGAATGGGAAGGAGGTCTCCGATTCGCCATCGCTGCCCACCAATAGTGCCATCGTCCTCTCCCCGCTACCACCACCGCTGCAGGCGAACAAGAATCACCAAGACCAAGATTCTGAGTCTGATTCCGATTCTGATGACGACGAGCCACCGCTGCCCACCAACAATGCAATCGTCCTCGCCCCGCCGAACAACCAGGAGTCTGAGTCTGATTCTGATTCTGATGACGACCAAGAGTCAGCGCTGAAGGCGAACAAGATTGTGTCCTTGTCCGGCGATGACGACCAAGAGTCCGATTCCAGTGACGACGAGGCGCTGCCAGCGCTTCAGGCCAACAAGAATGCGTCTCCGTCCGATGATGATGAGGATGACGACCAAGAGTCCGATTCCGGTGACGACGATGTGCTGCTGGACCCCGCGCTTCAGGCGAACAAGAATGTGCTTGCCTTCAATGGGAAGAGGAAGGTGCCGCCGCAAGAGGTTGGTCAGTCTCTTCGGCAGCCCAAGAAGAAGAAGATGGAGGCACCAGCCCAAGGAAACACAGACATTGACACGCAATTCAAGGAGAAGATTGCGTCCTACTTTTTCCTTGGGAAGGTGGTTTCTCTTCTGGATGAAGAGCACCCCGACTTGTTTAAGGAGGCTTTCTTGAAGCTTGCTGACAGCAAGGCCAGTGCCCTGGATGCTAAGATCAAGCAGCTGACTTTGGCTCAGGTCAGGGTGTCTTTGAAGGGGCGTGACCTGGAGAAGGAACTGATCAAGTTGCTGTCGGGCTTCCTCAAGTGATCATTATAGACATGGAGAAAACTTCAAGGAAGTGGGGGCTGACTGGACTGGGGTACAGTATGCTAATGCACCTGGTCATTTTGCTTTTGATTCTGGCTCATATCAACCTCGTTGGCATCGTCTCATTTTGGTCCAAGATGGACATGTTTAATCTACTGATGTAAATACTCTGGTGATTTGGGACCACCAAGACTAGCTACTCTACCCCATATTTAGATAGTACTAGCTTATATTCCACTGAACTACCTGCACAACAGTTATTAATCATGGTAAACTTCAGTTA]
[+] EMBL AK064377 [AAACCCTACCGCCGCCGCCGCTTCCTCTCCTCTTCTTCTTCCACCACCGGAGCAGAGGAAACCAAACCATGGCCCCCATCGTGCGCCCCTCCAAATCTGGCTCCAACTCCGATTCCGATTCCCACGCTCACCACCCTCCTCCTGAGCCGCCGCAAGAAAGCTCTGACGGCGAGGACTTGGAGCTCGAGTCCTCCGAGGAACTTGATTCGCATGGGGCGCCCACCAAGAAAGCCCCCTTCGTCGCCCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCCCAGCAGAATGGGAAGGAGGTCTCCGATTCGCCATCGCTGCCCACCAATAGTGCCATCGTCCTCTCCCCGCTACCACCACCGCTGCAGGCGAACAAGAATCACCAAGACCAAGATTCTGAGTCTGATTCCGATTCTGATGACGACGAGCCACCGCTGCCCACCAACAATGCAATCGTCCTCGCCCCGCCGAACAACCAGGAGTCTGAGTCTGATTCTGATTCTGATGACGACCAAGAGTCAGCGCTGAAGGCGAACAAGATTGTGTCCTTGTCCGGCGATGACGACCAAGAGTCCGATTCCAGTGACGACGAGGCGCTGCCAGCGCTTCAGGCCAACAAGAATGCGTCTCCGTCCGATGATGATGAGGATGACGACCAAGAGTCCGATTCCGGTGACGACGATGTGCTGCTGGACCCCGCGCTTCAGGCGAACAAGAATGTGCTTGCCTTCAATGGGAAGAGGAAGGTGCCGCCGCAAGAGGTTGGTCAGTCTCTTCGGCAGCCCAAGAAGAAGAAGATGGAGGCACCAGCCCAAGGAAACACAGACATTGACACGCAATTCAAGGAGAAGATTGCGTCCTACTTTTTCCTTGGGAAGGTGGTTTCTCTTCTGGATGAAGAGCACCCCGACTTGTTTAAGGAGGCTTTCTTGAAGCTTGCTGACAGCAAGGCCAGTGCCCTGGATGCTAAGATCAAGCAGCTGACTTTGGCTCAGGTCAGGGTGTCTTTGAAGGGGCGTGACCTGGAGAAGGAACTGATCAAGTTGCTGTCGGGCTTCCTCAAGTGATCATTATAGACATGGAGAAAACTTCAAGGAAGTGGGGGCTGACTGGACTGGGGTACAGTATGCTAATGCACCTGGTCATTTTGCTTTTGATTCTGGCTCATATCAACCTCGTTGGCATCGTCTCATTTTGGTCCAAGATGGACATGTTTAATCTACTGATGTAAATACTCTGGTGATTTGGGACCACCAAGACTAGCTACTCTACCCCATATTTAGATAGTACTAGCTTATATTCCACTGAACTACCTGCACAACAGTTATTAATCATGGTAAACTTCAGTTA]
[+] EMBL CF324544 [ AAGAATCACCAAGACCAAGATTCTGAGTCTGATTCCGATTCTGATGACGACGAGCCACCGCTGCCCACCAACAATGCAATCGTCCTCGCCCCGCCGAACAACCAGGAGTCTGAGTCTGATTCTGATTCTGATGACGACCAAGAGTCAGCGCTGAAGGCGAACAAGATTGTGTCCTCGTCCGGCGATGACGACCAAGAGTCCGATTCCAGTGACGACGAGACGCTGCCAGCGCTTCAGGCCAACAAGAATGCGTCTCCGTCCGATGATGATGAGGATGACGACCAAGAGTCCGATTCCGGTGACGACGATGTGCTGCTGGACCCCGCGCTTCAGGCGAACAAGAATGTGCTTGCCTTCAATGGGAAGAGGAAGGTGCCGCCGCAAGAGGTT ]
consensusID : consensus_4458#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence
[GCAAGCTGCTGAAATGATGGAAATGCAAGATCTTTTGGAAATATAGTGCGGAATAGTTACTGATTGATATATAAGAATGTCCCCAGAAACTAGATTCTGTAGTATAAACAATGCNAAACTTTCTAGGCAATTAAAACTACTGATTGTGCTTTCAACGTTTTGATGCCCTTCTTCCTTGTGTATGTAAAGGAGTTATTTGACATCAATATCAGTGGGTGCTTATTTGTTTAAAAGGTTTCAATGGCCTATCAGACTATCAGTGTAAATTGAGTCTATTTTTGCAAACACTGGTTTGGTCTTCTATGATCTTGGGCTATGTGCAGTTGTGTTTTTGATGACTAATCTAGCCAAGCAATTATGTAACTTGATTTACGTTTTCTTTTTTCATTTTTGCAGACATGGAGAAAACTTCAAGGAAGTGGGGGCTGACTGGACTGGGGTACAGTATGCTAATGCACCTGGTCATTTTGCTTTTGATTCTGGCTCATATCAACCTCGTTGGTATCGTCTCATTTTGGTCCAAGATGGACATGTTTAATCTACTGATGTAAATACTCTGGTGATTTGGGACCACCAAGACTAGCTACTCTACCCCATATTTAGATAGTACTAGCTTATATTCCACTGAACTACCTGCACAACAGTTATTAATCATGGTAAACTTCAGTTAAGCTTCCTTCAAAAAAAAAAAAA]
[-] EMBL CA760598 [GCAAGCTGCTGAAATGATGGAAATGCAAGATCTTTTGGAAATATAGTGCGGAATAGTTACTGATTGATATATAAGAATGTCCCCAGAAACTAGATTCTGTAGTATAAACAATGCNAAACTTTCTAGGCAATTAAAACTACTGATTGTGCTTTCAACGTTTTGATGCCCTTCTTCCTTGTGTATGTAAAGGAGTTATTTGACATCAATATCAGTGGGTGCTTATTTGTTTAAAAGGTTTCAATGGCCTATCAGACTATCAGTGTAAATTGAGTCTATTTTTGCAAACACTGGTTTGGTCTTCTATGATCTTGGGCTATGTGCAGTTGTGTTTTTGATGACTAATCTAGCCAAGCAATTATGTAACTTGATTTACGTTTTCTTTTTTCATTTTTGCAGACATGGAGAAAACTTCAAGGAAGTGGGGGCTGACTGGACTGGGGTACAGTATGCTAATGCACCTGGTCATTTTGCTTTTGATTCTGGCTCATATCAACCTCGTTGGTATCGTCTCATTTTGGTCCAAGATGGACATGTTTAATCTACTGATGTAAATACTCTGGTGATTTGGGACCACCAAGACTAGCTACTCTACCCCATATTTAGATAGTACTAGCTTATATTCCACTGAACTACCTGCACAACAGTTATTAATCATGGTAAACTTCAGTTAAGCTTCCTTCAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4458#0 AAACCCTACCGCCGCCGCCGCTTCCTCTCCTCTTCTTCTTCCACCACCGGAGCAGAGGAA 60
consensus_4458#1 ------------------------------------------------------------
consensus_4458#0 ACCAAACCATGGCCCCCATCGTGCGCCCCTCCAAATCTGGCTCCAACTCCGATTCCGATT 120
consensus_4458#1 ------------------------------------------------------------
consensus_4458#0 CCCACGCTCACCACCCTCCTCCTGAGCCGCCGCAAGAAAGCTCTGACGGCGAGGACTTGG 180
consensus_4458#1 ------------------------------------------------------------
consensus_4458#0 AGCTCGAGTCCTCCGAGGAACTTGATTCGCATGGGGCGCCCACCAAGAAAGCCCCCTTCG 240
consensus_4458#1 ------------------------------------------------------------
consensus_4458#0 TCGCCCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCCCAGCAGAATGGGAAGGAGGTCT 300
consensus_4458#1 ------------------------------------------------------------
consensus_4458#0 CCGATTCGCCATCGCTGCCCACCAATAGTGCCATCGTCCTCTCCCCGCTACCACCACCGC 360
consensus_4458#1 ------------------------------------------------------------
consensus_4458#0 TGCAGGCGAACAAGAATCACCAAGACCAAGATTCTGAGTCTGATTCCGATTCTGATGACG 420
consensus_4458#1 ------------------------------------------------------------
consensus_4458#0 ACGAGCCACCGCTGCCCACCAACAATGCAATCGTCCTCGCCCCGCCGAACAACCAGGAGT 480
consensus_4458#1 ------------------------------------------------------------
consensus_4458#0 CTGAGTCTGATTCTGATTCTGATGACGACCAAGAGTCAGCGCTGAAGGCGAACAAGATTG 540
consensus_4458#1 ------------------------------------------------------------
consensus_4458#0 TGTCCTTGTCCGGCGATGACGACCAAGAGTCCGATTCCAGTGACGACGAGGCGCTGCCAG 600
consensus_4458#1 ------------------------------------------------------------
consensus_4458#0 CGCTTCAGGCCAACAAGAATGCGTCTCCGTCCGATGATGATGAGGATGACGACCAAGAGT 660
consensus_4458#1 ------------------------------------------------------------
consensus_4458#0 CCGATTCCGGTGACGACGATGTGCTGCTGGACCCCGCGCTTCAGGCGAACAAGAATGTGC 720
consensus_4458#1 -------GCAAGCTGCTGAAATGATGGAAATGCAAGATCTTTTGGAAATATAGTGCGGAA 53
* * ** ** ** * * *** ** * ** *
consensus_4458#0 TTGCCTTCAATGGGAAGAGGAAGGTGCCGCCGCAAGAGGTTGGTCAGTCTCTTCGGCAGC 780
consensus_4458#1 TAGTTACTGATTGATATATAAGAATGTCCCC---AGAAACTAGA-------TTCTGTAGT 103
* * ** * * * * ** * ** *** * * *** * **
consensus_4458#0 CCAAGAAGAAGAAGATGGAGGCACCAGCCCAAGGAAACACAGACATTGACACGCAATTCA 840
consensus_4458#1 ATAAACAATGCNAAA---------CTTTCTAGGCAATTAAAACTACTGATTGTGCTTTCA 154
** * * * * * * * ** * * * *** ****
consensus_4458#0 AGGAGAAGATTGCGTCCTACTTTTTCCTTGGGAAGGTGGTTTCTCTTCTGGATGA-AGAG 899
consensus_4458#1 ACGTTTTGATGCCCTTCTTCCTTGTGTATGTAAAGGAGTTATTTGACATCAATATCAGTG 214
* * *** * * ** * ** * ** **** * * * * * ** ** *
consensus_4458#0 CACCCCGACTTGTTTAAGGAGGCTTTCTTGA---AGCTTGCTGACAGCAAGGCCAGTGCC 956
consensus_4458#1 GGTGCTTATTTGTTTAAA-AGGTTTCAATGGCCTATCAGACTATCAGTGTAAATTGAGTC 273
* * ******** *** ** ** * * ** *** * * *
consensus_4458#0 C-TGGATGCTAAGATCAAGCAGCT-------GACTTTGGCTCAGGTCAGGGTGTCTTTGA 1008
consensus_4458#1 TATTTTTGCAAACACTGGTTTGGTCTTCTATGATCTTGGGCTATGTGCAGTTGTGTTTTT 333
* *** ** * * * ** **** * ** * *** ***
consensus_4458#0 AGGGGCGTGACCTGGAGAAGGAACTGATCAAGTTGCTGTCGGGCTTCCTCAAGTGATCAT 1068
consensus_4458#1 GATGAC-TAATCTAGCCAAGCAATTATGTAACTTGAT-TTACGTTTTCTTTTTTCATTTT 391
* * * * ** * *** ** * ** *** * * * ** ** * ** *
consensus_4458#0 TATAGACATGGAGAAAACTTCAAGGAAGTGGGGGCTGACTGGACTGGGGTACAGTATGCT 1128
consensus_4458#1 TGCAGACATGGAGAAAACTTCAAGGAAGTGGGGGCTGACTGGACTGGGGTACAGTATGCT 451
* *********************************************************
consensus_4458#0 AATGCACCTGGTCATTTTGCTTTTGATTCTGGCTCATATCAACCTCGTTGGCATCGTCTC 1188
consensus_4458#1 AATGCACCTGGTCATTTTGCTTTTGATTCTGGCTCATATCAACCTCGTTGGTATCGTCTC 511
*************************************************** ********
consensus_4458#0 ATTTTGGTCCAAGATGGACATGTTTAATCTACTGATGTAAATACTCTGGTGATTTGGGAC 1248
consensus_4458#1 ATTTTGGTCCAAGATGGACATGTTTAATCTACTGATGTAAATACTCTGGTGATTTGGGAC 571
************************************************************
consensus_4458#0 CACCAAGACTAGCTACTCTACCCCATATTTAGATAGTACTAGCTTATATTCCACTGAACT 1308
consensus_4458#1 CACCAAGACTAGCTACTCTACCCCATATTTAGATAGTACTAGCTTATATTCCACTGAACT 631
************************************************************
consensus_4458#0 ACCTGCACAACAGTTATTAATCATGGTAAACTTCAGTTA--------------------- 1347
consensus_4458#1 ACCTGCACAACAGTTATTAATCATGGTAAACTTCAGTTAAGCTTCCTTCAAAAAAAAAAA 691
***************************************
consensus_4458#0 --
consensus_4458#1 AA 693
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||