These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4459#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1055 fasta sequence [CGGCCGCGCGCCCCCGCCGCTCTCCCGCCTGCCGCCCATTCTCTCCGCGATGGAGGACTCCCCAGCCGGCATCGTCGAGCGTTCCGACGGCCAAATCCCGGTGGAGGACGACTCCCAGCCGGAGCCCGATCCCGACGCCGACACCCCGGGCGGCTCGGTGCAGACCCGAGACTATTACGACACGTCGTCGTCAAGCCGGAGGCGGCGGAGCCTGGAGCGGACCAGCTCGGTGCGGAGGCCGTCATTCGAAGTCACCGACGCAAAGCCAGTGCTGCCGGCGGCGGCCGCCATAACAAGCGTCAAAGATTCGCCGCTAATTGGGAGCTCAGAGTTCTACCACTTCCAGCATGCCGAGGACCTGCTCGAACACCACCGGTTCAGCACCAGCTCCCTCATCGAAGACTTCCCCATGAGCCTGGACGCCGCGTTCCCGGGCCCCGACAAGAAGCCCCGGAGGTGGCGCAAGGCGTGGAGCCTCTGGGGCCTGATACACCGCCGCGCCGCCGGCCGCAGGGGCGGCGCGTCCGACGTCGCGGACAGGGCCTTCTCGGAGCCGTGGCCGGAGCTGCGCGTCCGCGGGTGCAACGCCAGGATGCAGCGGTGCAACAGCAACGCCAGCGCGCGGAGCTCTTTCAGCAGCAACAGCGGCGGCCTCGGCAGCTCGAGGCGCAGCTACGTCGACGGCAACGGCAACGTCGTCAAGCGGCGGCGGGAGGAGTGCGCCCTGGAGCGCAACCGCAGCGCGCGCTACTCGCCGGGGCACGCTGACAACGGCATGCTGCGGTTCTACCTCACGCCGATGCGGAGCGCCAGCGGCCGGCGCGCCCCGGGGCTACCGGCCAAAGGCGGCCGGCAACTGAGGTCGCAATCGTTCGCGCGTAGCATGCTCCGGCTGTACTGAGTTGTGTTTTTCGTTGCAGCAGTAGTGGAGGCTCAATGGCAATGGTATAACCATAAATCTTTTTTTACATCCTTGTGTAGCGCAGTGTTAATTCCGTTCATTTGGGGGGTTGGATTAAGGGGAATGGAGGTTTATCTCATAATCACCTCTTAAT] [+] EMBL AK064266 [CGGCCGCGCGCCCCCGCCGCTCTCCCGCCTGCCGCCCATTCTCTCCGCGATGGAGGACTCCCCAGCCGGCATCGTCGAGCGTTCCGACGGCCAAATCCCGGTGGAGGACGACTCCCAGCCGGAGCCCGATCCCGACGCCGACACCCCGGGCGGCTCGGTGCAGACCCGAGACTATTACGACACGTCGTCGTCAAGCCGGAGGCGGCGGAGCCTGGAGCGGACCAGCTCGGTGCGGAGGCCGTCATTCGAAGTCACCGACGCAAAGCCAGTGCTGCCGGCGGCGGCCGCCATAACAAGCGTCAAAGATTCGCCGCTAATTGGGAGCTCAGAGTTCTACCACTTCCAGCATGCCGAGGACCTGCTCGAACACCACCGGTTCAGCACCAGCTCCCTCATCGAAGACTTCCCCATGAGCCTGGACGCCGCGTTCCCGGGCCCCGACAAGAAGCCCCGGAGGTGGCGCAAGGCGTGGAGCCTCTGGGGCCTGATACACCGCCGCGCCGCCGGCCGCAGGGGCGGCGCGTCCGACGTCGCGGACAGGGCCTTCTCGGAGCCGTGGCCGGAGCTGCGCGTCCGCGGGTGCAACGCCAGGATGCAGCGGTGCAACAGCAACGCCAGCGCGCGGAGCTCTTTCAGCAGCAACAGCGGCGGCCTCGGCAGCTCGAGGCGCAGCTACGTCGACGGCAACGGCAACGTCGTCAAGCGGCGGCGGGAGGAGTGCGCCCTGGAGCGCAACCGCAGCGCGCGCTACTCGCCGGGGCACGCTGACAACGGCATGCTGCGGTTCTACCTCACGCCGATGCGGAGCGCCAGCGGCCGGCGCGCCCCGGGGCTACCGGCCAAAGGCGGCCGGCAACTGAGGTCGCAATCGTTCGCGCGTAGCATGCTCCGGCTGTACTGAGTTGTGTTTTTCGTTGCAGCAGTAGTGGAGGCTCAATGGCAATGGTATAACCATAA ] [-] EMBL CB650836 [ GCCGAGGACCTGCTCGAACACCACCGGTTCAGCACCAGCTCCCTCATCGAAGACTTCCCCATGAGCCTGGACGCCGCGTTCCCGGGCCCCGACAAGAAGCCCCGGAGGTGGCGCAAGGCGTGGAGCCTCTGGGGCCTGATACACCGCCGCGCCGCCGGCCGCAGGGGCGGCGCGTCCGACGTCGCGGACAGGGCCTTCTCGGAGCCGTGGCCGGAGCTGCGCGTCCGCGGGTGCAACGCCAGGATGCAGCGGTGCAACAGCAACGCCAGCGCGCGGAGCTCTTTCAGCAGCAACAGCGGCGGCCTCGGCAGCTCGAGGCGCAGCTACGTCGACGGCAACGGCAACGTCGTCAAGCGGCGGCGGGAGGAGTGCGCCCTGGAGCGCAACCGCAGCGCGCGCTACTCGCCGGGGCACGCTGACAACGGCATGCTGCGGTTCTACCTCACGCCGATGCGGAGCGCCAGCGGCCGGCGCGCCCCGGGGCTACCGGCCAAAGGCGGCCGGCAACTGAGGTCGCAATCGTTCGCGCGTAGCATGCTCCGGCTGTACTGAGTTGTGTTTTTCGTTGCAGCAGTAGTGGAGGCTCAATGGCAATGGTATAACCATAAATCTTTTTTTACATCCTTGTGTAGCGCAGTGTTAATTCCGTTCATTTGGGGGGTTGGATTAAGGGGAATGGAGGTTTATCTCATAATCACCTCTTAAT] consensusID : consensus_4459#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 478 fasta sequence [CGGCGGCGGGAGGAGTGCGCCCTGGAGCGCAACCGCAGCGCGCGCTACTCGCCGGGGCACGCTGACAACGGCATGCTGCGGTTCTACCTCACGCCGATGCGGAAGCGCCAGCGGGCCGGGCGCGCCCCGGGGGGCTTACCCGGGGCCAAAAGGGGGGGGCGGGAAAACTTAAGGGGGGGGGAAAAAATCCTTTTTCCCCCCCCCCCGTTTAAAAAATGGGGCCCCGGGGGTGGGACCCGGAGGGGTTGGGGGGGTNTTTTTTTGGGGGGGGGCGGGGCCCCACCAGTTTGGGGGGGGGGGCCAAAAGGGGAAAAGGGGTATAAACCCAAAAAAAATTTTTTTTAAACCCCCCCGGGGGGCCCCCCAGGGGGAAATCCCCCCGCCCTTTTGGGGGGGGGGGGTTTTTTAAAAAAAAGGGGGGGGGGTTTTTTTTAAAAAAAAAACCCCCCTTTTTAGNNGGGGAAAAAAAGAAAAAAGG] [+] EMBL BE040423 [CGGCGGCGGGAGGAGTGCGCCCTGGAGCGCAACCGCAGCGCGCGCTACTCGCCGGGGCACGCTGACAACGGCATGCTGCGGTTCTACCTCACGCCGATGCGGAAGCGCCAGCGGGCCGGGCGCGCCCCGGGGGGCTTACCCGGGGCCAAAAGGGGGGGGCGGGAAAACTTAAGGGGGGGGGAAAAAATCCTTTTTCCCCCCCCCCCGTTTAAAAAATGGGGCCCCGGGGGTGGGACCCGGAGGGGTTGGGGGGGTNTTTTTTTGGGGGGGGGCGGGGCCCCACCAGTTTGGGGGGGGGGGCCAAAAGGGGAAAAGGGGTATAAACCCAAAAAAAATTTTTTTTAAACCCCCCCGGGGGGCCCCCCAGGGGGAAATCCCCCCGCCCTTTTGGGGGGGGGGGGTTTTTTAAAAAAAAGGGGGGGGGGTTTTTTTTAAAAAAAAAACCCCCCTTTTTAGNNGGGGAAAAAAAGAAAAAAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4459#0 CGGCCGCGCGCCCCCGCCGCTCTCCCGCCTGCCGCCCATTCTCTCCGCGATGGAGGACTC 60 consensus_4459#1 ------------------------------------------------------------ consensus_4459#0 CCCAGCCGGCATCGTCGAGCGTTCCGACGGCCAAATCCCGGTGGAGGACGACTCCCAGCC 120 consensus_4459#1 ------------------------------------------------------------ consensus_4459#0 GGAGCCCGATCCCGACGCCGACACCCCGGGCGGCTCGGTGCAGACCCGAGACTATTACGA 180 consensus_4459#1 ------------------------------------------------------------ consensus_4459#0 CACGTCGTCGTCAAGCCGGAGGCGGCGGAGCCTGGAGCGGACCAGCTCGGTGCGGAGGCC 240 consensus_4459#1 ------------------------------------------------------------ consensus_4459#0 GTCATTCGAAGTCACCGACGCAAAGCCAGTGCTGCCGGCGGCGGCCGCCATAACAAGCGT 300 consensus_4459#1 ----------------------------CGGCGGCGGGAGGAGTGCGCCCTGGAGCGCAA 32 ** ** ** ** * **** * ** consensus_4459#0 CAAAGATTCGCCGCTAATTGGGAGCTCAGAGTTCTACCACTTCCAGCATGCCGAGGACCT 360 consensus_4459#1 CCGCAGCGCGC-GCTACTCG------CCGGGGCACGCTGACAACGGCATGCTGCGGTTCT 85 * *** **** * * * * * * * ****** * ** ** consensus_4459#0 GCTCGAACACCACCGGTTCAGCACCAGCTCCCTCATCGAAGACTTCCCCATGAGCCTGGA 420 consensus_4459#1 ACCTCA----CGCCGATGCGGAAGC-GCCAGCGGGCCGGGCGCGCCCCGGGGGGCTT--A 138 * * * *** * * * * * ** * ** * *** * ** * * consensus_4459#0 CGCCGCGTTCCCGGGCCCCGACAAGAAGCCCCGGAGGTGGCGCAAGGCGTGGAGCCTCTG 480 consensus_4459#1 CCCGGGGCCAAAAGGGGGGGGCGGGAAAACTTAAGGGGGGGGGAAAAAAT----CCTTTT 194 * * * * ** * * *** * ** ** * ** * *** * consensus_4459#0 GGGCCTGATACACCGCCGCGCCGCCGGCCGCAGGGGCGGCGCGTCCGACGTCGCGGACAG 540 consensus_4459#1 TCCCCCCCCCCCGTTTAAAAAATGGGGCCCCGGGGGTGGGAC--CCGGAGGGGTTGGGGG 252 ** * **** * **** ** * *** * * * * consensus_4459#0 GGCCTTCTCGGAGCCGTGGCCGGAGCTGCGCGTCCGCGGGTGCAACGCCAGGATGCAGCG 600 consensus_4459#1 GGTNTTTTTTTGGGGGGGGGCGGGGCCCCACCAGTTTGGGGGGGGGGGCCAAAAGGGGAA 312 ** ** * * * ** *** ** * * *** * * * * * * consensus_4459#0 GTGCAACAGCAACGCCAGCGCGCGGAGCTCTTTCAGCAGCAACAGCGGCGGCCTCGGCAG 660 consensus_4459#1 AAGGGGTATAAACCCAAA-----AAAAATTTTTTTTAAACCCCCCCGGGGGGCCCCCCAG 367 * * *** * * * * *** * * * *** ** * * *** consensus_4459#0 CTCGAGGCGCAGCTACGTCGACGGCAACGGCAACGTCGTCAAGCGGCGGCGGGAGGAGTG 720 consensus_4459#1 GGGGAAATCCCCCCGCCCTTTTGGGGGGGGGGGGTTTTTTAAAAAAAAGGGGGGGGGGTT 427 ** * * * ** ** * * ** * *** ** ** consensus_4459#0 CGCCCTGGAGCGCAACCGCAGCGCGCGCTACTCGCCGGGGCACGCTGACAACGGCATGCT 780 consensus_4459#1 TTTTTTAAAAAAAAAACCC--CCCTTTTTAGNNGGGGAAAAAAAGAAAAAAGG------- 478 * * ** * * * * ** * * * * ** * consensus_4459#0 GCGGTTCTACCTCACGCCGATGCGGAGCGCCAGCGGCCGGCGCGCCCCGGGGCTACCGGC 840 consensus_4459#1 ------------------------------------------------------------ consensus_4459#0 CAAAGGCGGCCGGCAACTGAGGTCGCAATCGTTCGCGCGTAGCATGCTCCGGCTGTACTG 900 consensus_4459#1 ------------------------------------------------------------ consensus_4459#0 AGTTGTGTTTTTCGTTGCAGCAGTAGTGGAGGCTCAATGGCAATGGTATAACCATAAATC 960 consensus_4459#1 ------------------------------------------------------------ consensus_4459#0 TTTTTTTACATCCTTGTGTAGCGCAGTGTTAATTCCGTTCATTTGGGGGGTTGGATTAAG 1020 consensus_4459#1 ------------------------------------------------------------ consensus_4459#0 GGGAATGGAGGTTTATCTCATAATCACCTCTTAAT 1055 consensus_4459#1 ----------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||