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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4463#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 740 fasta sequence
[ACGAGGGCAATAACAGCAGCAGCATTTTCTGATTCTTCTCAATTGGAGAGAGTGCTCAGTGCTCTCCTATAAATCCTACTAGCACTAGCACACCCAAAGCGACCAACGAGTGATCCGATCCGATGGACAGTCGCCGTCCCTTGCTTATTCCGAATGAGGGTGACGAGCCGCCGCCGCAGCCGCCGGAGCCGCCGCTCGCCGGCGTGTCCGACTTCCGAGGGCGGCCGGTCTACCGCGCCACCTCAGGCGGCTGGCGCTCCGCACTGTTCGTCGCCAGTGAGCGTGTACTGCGTATACCGATGTTTGTTCGGTTTGGTTAATTTTGTTCCTTAATTTGCAAAGTTTGATTAGATTTCATGAGAGATTAATTGATTAATGAATTGTTGCAGTGTTGGAGATGGGCTGCAGCTTCTCCTACTACGGCGTGTCGGCGAACCTGATCAGCTACCTGACGGGGCCGCTGGGGCAATCGAACGCGTCGGCGGCGAACGCGTGGTCGGGGACGGCGCGCATGCTCCCTCTCCTCGGCGCCGTCCTCGCCGACTCCTTCTCGGCCGCTACCCATTCATCCTCCTCGCCTGCACCCTCTACGTCATGGGGCTTGGCATGCTGACTGTGGCGTCCTCGCTGCCGGCGTGCGCCGCCACCGCCGCCGCCGCCGCCGCCTGCCGTCCTTCCATGGCACAGGTGATCTTCGTCTACGTTTCGCTCTACCTCGTCGCCTTCGCTCAGGGATTCGA]
[+] EMBL CB647869 [ACGAGGGCAATAACAGCAGCAGCATTTTCTGATTCTTCTCAATTGGAGAGAGTGCTCAGTGCTCTCCTATAAATCCTACTAGCACTAGCACACCCAAAGCGACCAACGAGTGATCCGATCCGATGGACAGTCGCCGTCCCTTGCTTATTCCGAATGAGGGTGACGAGCCGCCGCCGCAGCCGCCGGAGCCGCCGCTCGCCGGCGTGTCCGACTTCCGAGGGCGGCCGGTCTACCGCGCCACCTCAGGCGGCTGGCGCTCCGCACTGTTCGTCGCCAGTGAGCGTGTACTGCGTATACCGATGTTTGTTCGGTTTGGTTAATTTTGTTCCTTAATTTGCAAAGTTTGATTAGATTTCATGAGAGATTAATTGATTAATGAATTGTTGCAGTGTTGGAGATGGGCTGCAGCTTCTCCTACTACGGCGTGTCGGCGAACCTGATCAGCTACCTGACGGGGCCGCTGGGGCAATCGAACGCGTCGGCGGCGAACGCGTGGTCGGGGACGGCGCGCATGCTCCCTCTCCTCGGCGCCGTCCTCGCCGACTCCTTCTCGGCCGCTACCCATTCATCCTCCTCGCCTGCACCCTCTACGTCATGGGGCTTGGCATGCTGACTGTGGCGTCCTCGCTGCCGGCGTGCGCCGCCACCGCCGCCGCCGCCGCCGCCTGCCGTCCTTCCATGGCACAGGTGATCTTCGTCTACGTTTCGCTCTACCTCGTCGCCTTCGCTCAGGGATTCGA]
consensusID : consensus_4463#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 595 fasta sequence
[GCCGCATTAATTAATTAATCCTCTGAGCCTTGTCAATTCAATTGGCCGATTTGTNNTTGCCACCATCATCCTACCTACGAGCAGAGCAGANCGCACCGATTCAGCGAGGAAAGGAAAGGAAGAGAAAAGCAAAGCGATCGATCGAGGAGGAATCCGAATACGATGGACGGTCGTCCCTTGCTTCCGAATGAGGAGGAGGAGGAGGCGCTCCCCGGCGTGTCCGACTTCCGCGGGCGCCCCGTTTACCGCGCCACCTCAGGCGGCTGGCGCTCCGCCCTCTTCGTCGCCGTGTTGGAGTTGGCCGGCAGCTTCGCCTACTTCGGCGTGTCGGCGAACCTGATCACGTATCTGACGGGGCCGATGGGGCAATCCAACGCGTCGGCGGCGGCGGCGGTGAACGCCTGGTCGGGGGCGGCCTGCATGCTTCCTCTCCTCGGCGCCTTCCTCGCCGACTCCTTCCTCGGCCGCTACCCATCCATCCTCCTCGCCTGCACCCTTTACCTCCTGGGGTACGGCATGCTGACGGTGGCGTCGTCGGTGGTGGCGTCCAAGTCACAGGTGGGCATCTTGTACGTGTCGCTGTACCTGGTGGCCT]
[+] EMBL BE229632 [GCCGCATTAATTAATTAATCCTCTGAGCCTTGTCAATTCAATTGGCCGATTTGTNNTTGCCACCATCATCCTACCTACGAGCAGAGCAGANCGCACCGA ]
[+] EMBL CA756494 [ AATTAATCCTCTGAGCCTTGTCAATTCAATTGGCCGATTTGTAGTTGCCACCATCATCCTACCTACGAGCAGAGCAGAGCGCACCGATTCAGCGAGGAAAGGAAAGGAAGAGAAAAGCAAAGCGATCGATCGAGGAGGAATCCGAATACGATGGACGGTCGTCCCTTGCTTCCGAATGAGGAGGAGGAGGAGGCGCTCCCCGGCGTGTCCGACTTCCGCGGGCGCCCCGTTTACCGCGCCACCTCAGGCGGCTGGCGCTCCGCCCTCTTCGTCGCCGTGTTGGAGTTGGCCGGCAGCTTCGCCTACTTCGGCGTGTCGGCGAACCTGATCACGTATCTGACGGGGCCGATGGGGCAATCCAACGCGTCGGCGGCGGCGGCGGTGAACGCCTGGTCGGGGGCGGCCTGCATGCTTCCTCTCCTCGGCGCCTTCCTCGCCGACTCCTTCCTCGGCCGCTACCCATCCATCCTCCTCGCCTGCACCCTTTACCTCCTGGGGTACGGCATGCTGACGGTGGCGTCGTCGGTGGTGGCGTCCAAGTCACAGGTGGGCATCTTGTACGTGTCGCTGTACCTGGTGGCCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4463#0 ACGAGGGCAATAACAGCAGCAGCATTTTCTGATTCTTCTCAATTGGAGAGAGTGCTCAGT 60
consensus_4463#1 ------------------------------------------------------------
consensus_4463#0 GCTCTCCTATAAATCCTACTAGCACTAGCACACCCAAAGCGACCAACGAGTGATCCGATC 120
consensus_4463#1 ------------GCCGCATTA--ATTAATTAATCCTCTGAGCCTTGTCA---ATTCAATT 43
* * ** * ** * ** * * * * ** * **
consensus_4463#0 CGATGGACAGTCGCCGTCCCTTGCTTATTCCGAATGAGGGTGACGAGCCGCCGCCGCAGC 180
consensus_4463#1 GGCCGATTTGTNNTTGCCACCATCATCCTACCTACGAGCAGAGCAGANCGC-ACCGATTC 102
* * ** * * * * * * * * *** * *** *** *
consensus_4463#0 CGCCGGAGCCGCCGCTCGCCGGCGTGTCCGACTTCCGAGGGCGGCCGGTCTACCGCGCCA 240
consensus_4463#1 AGCGAGGAAAGGAAAGGAAGAGAAAAGC---------AAAGCGATCGATCGAGGAGGAAT 153
** * * * * * *** ** ** * *
consensus_4463#0 CCTCAGGCGGCTGGCGCTCCGCACTGTTCGTCGCCAGTGAGCGTGTACTGCGTATACCGA 300
consensus_4463#1 CCGAATACGATGGACGGTCGTCCCTTGCTTCCGAATGAGGAGGAGGAGGAGGCGCTCCCC 213
** * ** * ** ** * ** ** * * * * * * **
consensus_4463#0 TGTTTGTTCGGTTTGGTTAATTTTGTTCCTTAATTTGCAAAGTTTGATTAGATTTCATGA 360
consensus_4463#1 GGCGTGTCCGACTTC-----CGCGGGCGCCCCGTTTACCGCGCCACCTCAGGC--GGCTG 266
* *** ** ** * * *** * * * **
consensus_4463#0 GAGATTAATTGATTAATGAATTGTTGCAGTGTTGGAGATGGGCTGCAGCTTCTCCTACTA 420
consensus_4463#1 GCGCTCCGCCCTCT------TCGTCGCCGTGTTGGAGTTGGCCGGCAGCTTCGCCTACTT 320
* * * * * ** ** ********* *** * ******** ******
consensus_4463#0 CGGCGTGTCGGCGAACCTGATCAGCTACCTGACGGGGCCGCTGGGGCAATCGAACGCGTC 480
consensus_4463#1 CGGCGTGTCGGCGAACCTGATCACGTATCTGACGGGGCCGATGGGGCAATCCAACGCGTC 380
*********************** ** ************ ********** ********
consensus_4463#0 GGCGGCG---------AACGCGTGGTCGGGGACGGCGCGCATGCTCCCTCTCCTCGGCGC 531
consensus_4463#1 GGCGGCGGCGGCGGTGAACGCCTGGTCGGGGGCGGCCTGCATGCTTCCTCTCCTCGGCGC 440
******* ***** ********* **** ******* **************
consensus_4463#0 CGTCCTCGCCGACTCCTTC-TCGGCCGCTACCCATTCATCCTCCTCGCCTGCACCCTCTA 590
consensus_4463#1 CTTCCTCGCCGACTCCTTCCTCGGCCGCTACCCATCCATCCTCCTCGCCTGCACCCTTTA 500
* ***************** *************** ********************* **
consensus_4463#0 CGTCATGGGGCTTGGCATGCTGACTGTGGCGTCCTCGCTGCCGGCGTGCGCCGCCACCGC 650
consensus_4463#1 CCTCCTGGGGTACGGCATGCTGACGGTGGCGTCGTCGGTGGTGGCGT------------- 547
* ** ***** *********** ******** *** ** *****
consensus_4463#0 CGCCGCCGCCGCCGCCTGCCGTCCTTCCATGGCACAGGTGATCTTCGTCTACGTTTCGCT 710
consensus_4463#1 --------------------------CCAAGTCACAGGTGGGCATCTTGTACGTGTCGCT 581
*** * ******** * ** * ***** *****
consensus_4463#0 CTACCTCGTCGCCTTCGCTCAGGGATTCGA 740
consensus_4463#1 GTACCTGGTGGCCT---------------- 595
***** ** ****
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||