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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4465#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1531 fasta sequence
[GACGACTCTCCGACTCCCACTCCACCTCCAATCGAACCCCACCCGCCGCCGCCGCCGGAGGCGTCTACCCCTGCTATCCTCCCCCGCGCGCCGCCGATCGAATCCGCAAGCCGCGATGGATTCCCTTCTTGCCAACTACGCCTCTTCCGACGACGAGGCCGACGAAACCCTACCCACTCCTCCCGCCGCCGCCGCGGCCCGACCGAAGCCGCCCTCCGGTGGCGGCATCTTCTCGTCGCTCCCGCAGCCCAAGTCGGCGCTCCTCTTCTCCTCCCTCCCGGCGCCCAAATCCGGGCCCGTCTTCTCCGCCATCCCGCCTCCCAAGTCCTCCTCCGGGAACCCTAAGCGGGTCGTGCAGTTCCGCCCGCCTCCGATCCGCCAGCCCACGGGCGAGAGCTCCGACGAGGAGGACGACGACGCCGAGAAGCGCCGCCCTAGCGAGGCCGAGCCGCGCCCGCCCGTATCCGCGGGCACGGGGCCTGTCTCTTCGTTCCTCCCGCCGCCCAAGCGCTCCCTCGGGCTCGGCGGTGGCGGCGCCGCCAGGAGGTCGGCCATAGACACCGCTGCGCCGGAGAGGTCGAATGTTGTCGCCGCTGGTCCATCGTCCTCGGCCGTCAACGCAATTGCCCCCGAAAGGCCTGATACTACCTCTGCCGATGATGAAGACGATGAATCGAATGGGAGCAGCGATGACGATGAGATGCCTGTGCCGGAGGAGCAGCAGGAGCAGCTCGCTGTTGATTCCGAAGCTGGACAGCAGCAGCAGAATCAGCAGCAAAGCTATGATGCTGGAGTTGGGAGCAGTAATGGACAGGAAGGCTACGCATGGGATCCAAATTACTACGCCAATTACGGTGCAAACTATGGCTGGGATCCGAGCGGCAATGTGAACTATGGGACTGAAGCGCAGTATGCGGCATATGGAGGAGAGCACGGTGGAGTGTATGGAAATACATACGGAGTAGAACATGGTGATGGATATGGGCATTCGACGGAAATGGCATATGGAGGGGGCTATGCTGGTGGGTACGAACATAATGCGGCTGCAGCGACAGCACCGCCAATCCAGCAGCCAATACTGCCACCGGAGGTTGGTAGGATTGGAGGGAAGAGAGGTAGGAGCGATATGCCGGCAGAGATTTTAGAGGTTAACCAGGCAGAGCTGATGAAGAACCGACCGAGGGAGGATAAGTCCAAGCTCACTGGGATGGCCTTCGGCCCTAGTTACCAGCCCGCCCCTTCAGCAAAAGGAAAGCCCTCCAAGCTGCACAAAAGAAAGCACCAGATTGGTTCTCTATTCTATGACATGAAGCAAAAGGAGATGGAGCTTGCCGAGAGGCGTTCCAAGGGATTCCTCACAAAAGCAGAGACTCAAGCAAAGTATGGATGGTGAGCATGGTACGTCGGGCATAGGATGGAATTGAACAGTGTATTTCGGTTTTGTTGTCTAATTATTTTGTTGTAAATTGTTCTTGATAATATAAACTGGAATTTAAAACTAGTCGTTGGAAGCAACCTTTTGCACCATTCG]
[+] EMBL AK099377 [GACGACTCTCCGACTCCCACTCCACCTCCAATCGAACCCCACCCGCCGCCGCCGCCGGAGGCGTCTACCCCTGCTATCCTCCCCCGCGCGCCGCCGATCGAATCCGCAAGCCGCGATGGATTCCCTTCTTGCCAACTACGCCTCTTCCGACGACGAGGCCGACGAAACCCTACCCACTCCTCCCGCCGCCGCCGCGGCCCGACCGAAGCCGCCCTCCGGTGGCGGCATCTTCTCGTCGCTCCCGCAGCCCAAGTCGGCGCTCCTCTTCTCCTCCCTCCCGGCGCCCAAATCCGGGCCCGTCTTCTCCGCCATCCCGCCTCCCAAGTCCTCCTCCGGGAACCCTAAGCGGGTCGTGCAGTTCCGCCCGCCTCCGATCCGCCAGCCCACGGGCGAGAGCTCCGACGAGGAGGACGACGACGCCGAGAAGCGCCGCCCTAGCGAGGCCGAGCCGCGCCCGCCCGTATCCGCGGGCACGGGGCCTGTCTCTTCGTTCCTCCCGCCGCCCAAGCGCTCCCTCGGGCTCGGCGGTGGCGGCGCCGCCAGGAGGTCGGCCATAGACACCGCTGCGCCGGAGAGGTCGAATGTTGTCGCCGCTGGTCCATCGTCCTCGGCCGTCAACGCAATTGCCCCCGAAAGGCCTGATACTACCTCTGCCGATGATGAAGACGATGAATCGAATGGGAGCAGCGATGACGATGAGATGCCTGTGCCGGAGGAGCAGCAGGAGCAGCTCGCTGTTGATTCCGAAGCTGGACAGCAGCAGCAGAATCAGCAGCAAAGCTATGATGCTGGAGTTGGGAGCAGTAATGGACAGGAAGGCTACGCATGGGATCCAAATTACTACGCCAATTACGGTGCAAACTATGGCTGGGATCCGAGCGGCAATGTGAACTATGGGACTGAAGCGCAGTATGCGGCATATGGAGGAGAGCACGGTGGAGTGTATGGAAATACATACGGAGTAGAACATGGTGATGGATATGGGCATTCGACGGAAATGGCATATGGAGGGGGCTATGCTGGTGGGTACGAACATAATGCGGCTGCAGCGACAGCACCGCCAATCCAGCAGCCAATACTGCCACCGGAGGTTGGTAGGATTGGAGGGAAGAGAGGTAGGAGCGATATGCCGGCAGAGATTTTAGAGGTTAACCAGGCAGAGCTGATGAAGAACCGACCGAGGGAGGATAAGTCCAAGCTCACTGGGATGGCCTTCGGCCCTAGTTACCAGCCCGCCCCTTCAGCAAAAGGAAAGCCCTCCAAGCTGCACAAAAGAAAGCACCAGATTGGTTCTCTATTCTATGACATGAAGCAAAAGGAGATGGAGCTTGCCGAGAGGCGTTCCAAGGGATTCCTCACAAAAGCAGAGACTCAAGCAAAGTATGGATGGTGAGCATGGTACGTCGGGCATAGGATGGAATTGAACAGTGTATTTCGGTTTTGTTGTCTAATTATTTTGTTGTAAATTGTTCTTGATAATATAAACTGGAATTTAAAACTAGTCGTTGGAAGCAAC ]
[+] EMBL AK064060 [ ACGACTCTCCGACTCCCACTCCACCTCCAATCGAACCCCACCCGCCGCCGCCGCCGGAGGCGTCTACCCCTGCTCTCCTCCCCCGCGCGCCGCCGATCGAATCCGCAAGCCGCGATGGATTCCCTTCTTGCCAACTACGCCTCTTCCGACGACGAGGCCGACGAAACCCTACCCACTCCTCCCGCCGCCGCCGCGGCCCGACCGAAGCCGCCCTCCGGTGGCGGCATCTTCTCGTCGCTCCCGCAGCCCAAGTCGGCGCTCCTCTTCTCCTCCCTCCCGGCGCCCAAATCCGGGCCCGTCTTCTCCGCCATCCCGCCTCCCAAGTCCTCCTCCGGGAACCCTAAGCGGGTCGTGCAGTTCCGCCCGCCTCCGATCCGCCAGCCCACGGGCGAGAGCTCCGACGAGGAGGACGACGACGCCGAGAAGCGCCGCCCTAGCGAGGCCGAGCCGCGCCCGCCCGTATCCGCGGGCACGGGGCCTGTCTCTTCGTTCCTCCCGCCGCCCAAGCGCTCCCTCGGGCTCGGCGGTGGCGGCGCCGCCAGGAGGTCGGCCATAGACACCGCTGCGCCGGAGAGGTCGAATGTTGTCGCCGCTGGTCCATCGTCCTCGGCCGTCAACGCAATTGCCCCCGAAAGGCCTGATACTACCTCTGCCGATGATGAAGACGATGAATCGAATGGGAGCAGCGATGACGATGAGATGCCTGTGCCGGAGGAGCAGCAGGAGCAGCTCGCTGTTGATTCCGAAGCTGGACAGCAGCAGCAGAATCAGCAGCAAAGCTATGATGCTGGAGTTGGGAGCAGTAATGGACAGGAAGGCTACGCATGGGATCCAAATTACTACGCCAATTACGGTGCAAACTATGGCTGGGATCCGAGCGGCAATGTGAACTATGGGACTGAAGCGCAGTATGCGGCATATGGAGGAGAGCACGGTGGAGTGTATGGAAATACATACGGAGTAGAACATGGTGATGGATATGGGCATTCGACGGAAATGGCATATGGAGGGGGCTATGCTGGTGGGTACGAACATAATGCGGCTGCAGCGACAGCACCGCCAATCCAGCAGCCAATACTGCCACCGGAGGTTGGTAGGATTGGAGGGAAGAGAGGTAGGAGCGATATGCCGGCAGAGATTTTAGAGGTTAACCAGGCAGAGCTGATGAAGAACCGACCGAGGGAGGATAAGTCCAAGCTCACTGGGATGGCCTTCGGCCCTAGTTACCAGCCCGCCCCTTCAGCAAAAGGAAAGCCCTCCAAGCTGCACAAAAGAAAGCACCAGATTGGTTCTCTATTCTATGACATGAAGCAAAAGGAGATGGAGCTTGCCGAGAGGCGTTCCAAGGGATTCCTCACAAAAGCAGAGACTCAAGCAAAGTATGGATGGTGAGCATGGTACGTCGGGCATAGGATGGAATTGAACAGTGTATTTCGGTTTTGTTGTCTAATTATTTTGTTGTAAATTGTTCTTGATAATATAAACTGGAATTTAAAACTAGTCGTTGGAAGCAACCTTTTGCACCATTCG]
consensusID : consensus_4465#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 321 fasta sequence
[GTTAGAATTGGAGGGAAGAGAGTTAGGACCGATATCCGCCAGAGATTTTAGAGGTTAACCAGCCAGAGCTGATGAAGACCCGCCCGAGGGAGGATAAGTCCCAGCTCACTGGGATGCCCTTCGGCCCTAGTTACCACGCCCGCCCCTTCAGCAAAAGGAAAGCCCTCCAAGCTGCACAAAGAAAGCACCAGATTGGTTCTCTATTCTATGACATGAACCCAAAGGAGATGGAGCTTCCCGAGAGGCGTTCCAAGGGATTCCTCACCAAACCAGAGACTCAACCCAAGTATGGATGGTGACCCTGGTACTTCGGGCCATAGG]
[+] EMBL BI809762 [GTTAGAATTGGAGGGAAGAGAGTTAGGACCGATATCCGCCAGAGATTTTAGAGGTTAACCAGCCAGAGCTGATGAAGACCCGCCCGAGGGAGGATAAGTCCCAGCTCACTGGGATGCCCTTCGGCCCTAGTTACCACGCCCGCCCCTTCAGCAAAAGGAAAGCCCTCCAAGCTGCACAAAGAAAGCACCAGATTGGTTCTCTATTCTATGACATGAACCCAAAGGAGATGGAGCTTCCCGAGAGGCGTTCCAAGGGATTCCTCACCAAACCAGAGACTCAACCCAAGTATGGATGGTGACCCTGGTACTTCGGGCCATAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4465#0 GACGACTCTCCGACTCCCACTCCACCTCCAATCGAACCCCACCCGCCGCCGCCGCCGGAG 60
consensus_4465#1 ------------------------------------------------------------
consensus_4465#0 GCGTCTACCCCTGCTATCCTCCCCCGCGCGCCGCCGATCGAATCCGCAAGCCGCGATGGA 120
consensus_4465#1 ------------------------------------------------------------
consensus_4465#0 TTCCCTTCTTGCCAACTACGCCTCTTCCGACGACGAGGCCGACGAAACCCTACCCACTCC 180
consensus_4465#1 ------------------------------------------------------------
consensus_4465#0 TCCCGCCGCCGCCGCGGCCCGACCGAAGCCGCCCTCCGGTGGCGGCATCTTCTCGTCGCT 240
consensus_4465#1 ------------------------------------------------------------
consensus_4465#0 CCCGCAGCCCAAGTCGGCGCTCCTCTTCTCCTCCCTCCCGGCGCCCAAATCCGGGCCCGT 300
consensus_4465#1 ------------------------------------------------------------
consensus_4465#0 CTTCTCCGCCATCCCGCCTCCCAAGTCCTCCTCCGGGAACCCTAAGCGGGTCGTGCAGTT 360
consensus_4465#1 ------------------------------------------------------------
consensus_4465#0 CCGCCCGCCTCCGATCCGCCAGCCCACGGGCGAGAGCTCCGACGAGGAGGACGACGACGC 420
consensus_4465#1 ------------------------------------------------------------
consensus_4465#0 CGAGAAGCGCCGCCCTAGCGAGGCCGAGCCGCGCCCGCCCGTATCCGCGGGCACGGGGCC 480
consensus_4465#1 ------------------------------------------------------------
consensus_4465#0 TGTCTCTTCGTTCCTCCCGCCGCCCAAGCGCTCCCTCGGGCTCGGCGGTGGCGGCGCCGC 540
consensus_4465#1 ------------------------------------------------------------
consensus_4465#0 CAGGAGGTCGGCCATAGACACCGCTGCGCCGGAGAGGTCGAATGTTGTCGCCGCTGGTCC 600
consensus_4465#1 ------------------------------------------------------------
consensus_4465#0 ATCGTCCTCGGCCGTCAACGCAATTGCCCCCGAAAGGCCTGATACTACCTCTGCCGATGA 660
consensus_4465#1 ------------------------------------------------------------
consensus_4465#0 TGAAGACGATGAATCGAATGGGAGCAGCGATGACGATGAGATGCCTGTGCCGGAGGAGCA 720
consensus_4465#1 ------------------------------------------------------------
consensus_4465#0 GCAGGAGCAGCTCGCTGTTGATTCCGAAGCTGGACAGCAGCAGCAGAATCAGCAGCAAAG 780
consensus_4465#1 ------------------------------------------------------------
consensus_4465#0 CTATGATGCTGGAGTTGGGAGCAGTAATGGACAGGAAGGCTACGCATGGGATCCAAATTA 840
consensus_4465#1 ------------------------------------------------------------
consensus_4465#0 CTACGCCAATTACGGTGCAAACTATGGCTGGGATCCGAGCGGCAATGTGAACTATGGGAC 900
consensus_4465#1 ------------------------------------------------------------
consensus_4465#0 TGAAGCGCAGTATGCGGCATATGGAGGAGAGCACGGTGGAGTGTATGGAAATACATACGG 960
consensus_4465#1 ------------------------------------------------------------
consensus_4465#0 AGTAGAACATGGTGATGGATATGGGCATTCGACGGAAATGGCATATGGAGGGGGCTATGC 1020
consensus_4465#1 ------------------------------------------------------------
consensus_4465#0 TGGTGGGTACGAACATAATGCGGCTGCAGCGACAGCACCGCCAATCCAGCAGCCAATACT 1080
consensus_4465#1 ------------------------------------------------------------
consensus_4465#0 GCCACCGGAGGTTGGTAGGATTGGAGGGAAGAGAGGTAGGAGCGATATGCCGGCAGAGAT 1140
consensus_4465#1 -------------GTTAGAATTGGAGGGAAGAGAGTTAGGACCGATAT-CCGCCAGAGAT 46
* *** **************** ***** ****** *** *******
consensus_4465#0 TTTAGAGGTTAACCAGGCAGAGCTGATGAAGAACCGACCGAGGGAGGATAAGTCCAAGCT 1200
consensus_4465#1 TTTAGAGGTTAACCAGCCAGAGCTGATGAAGACCCGCCCGAGGGAGGATAAGTCCCAGCT 106
**************** *************** *** ****************** ****
consensus_4465#0 CACTGGGATGGCCTTCGGCCCTAGTTACCA-GCCCGCCCCTTCAGCAAAAGGAAAGCCCT 1259
consensus_4465#1 CACTGGGATGCCCTTCGGCCCTAGTTACCACGCCCGCCCCTTCAGCAAAAGGAAAGCCCT 166
********** ******************* *****************************
consensus_4465#0 CCAAGCTGCACAAAAGAAAGCACCAGATTGGTTCTCTATTCTATGACATGAAGCAAAAGG 1319
consensus_4465#1 CCAAGCTGCACAAA-GAAAGCACCAGATTGGTTCTCTATTCTATGACATGAACCCAAAGG 225
************** ************************************* * *****
consensus_4465#0 AGATGGAGCTTGCCGAGAGGCGTTCCAAGGGATTCCTCACAAAAGCAGAGACTCAAGCAA 1379
consensus_4465#1 AGATGGAGCTTCCCGAGAGGCGTTCCAAGGGATTCCTCACCAAACCAGAGACTCAACCCA 285
*********** **************************** *** *********** * *
consensus_4465#0 AGTATGGATGGTGAGCATGGTACGTCGGGC-ATAGGATGGAATTGAACAGTGTATTTCGG 1438
consensus_4465#1 AGTATGGATGGTGACCCTGGTACTTCGGGCCATAGG------------------------ 321
************** * ****** ****** *****
consensus_4465#0 TTTTGTTGTCTAATTATTTTGTTGTAAATTGTTCTTGATAATATAAACTGGAATTTAAAA 1498
consensus_4465#1 ------------------------------------------------------------
consensus_4465#0 CTAGTCGTTGGAAGCAACCTTTTGCACCATTCG 1531
consensus_4465#1 ---------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||