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Oryza sativa
cluster # 4465 cluster # 4465       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4465#0 length = 1531 sequences # 2  
consensus_4465#1 length = 321 sequences # 1  

consensusID : consensus_4465#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1531
fasta sequence
                              [GACGACTCTCCGACTCCCACTCCACCTCCAATCGAACCCCACCCGCCGCCGCCGCCGGAGGCGTCTACCCCTGCTATCCTCCCCCGCGCGCCGCCGATCGAATCCGCAAGCCGCGATGGATTCCCTTCTTGCCAACTACGCCTCTTCCGACGACGAGGCCGACGAAACCCTACCCACTCCTCCCGCCGCCGCCGCGGCCCGACCGAAGCCGCCCTCCGGTGGCGGCATCTTCTCGTCGCTCCCGCAGCCCAAGTCGGCGCTCCTCTTCTCCTCCCTCCCGGCGCCCAAATCCGGGCCCGTCTTCTCCGCCATCCCGCCTCCCAAGTCCTCCTCCGGGAACCCTAAGCGGGTCGTGCAGTTCCGCCCGCCTCCGATCCGCCAGCCCACGGGCGAGAGCTCCGACGAGGAGGACGACGACGCCGAGAAGCGCCGCCCTAGCGAGGCCGAGCCGCGCCCGCCCGTATCCGCGGGCACGGGGCCTGTCTCTTCGTTCCTCCCGCCGCCCAAGCGCTCCCTCGGGCTCGGCGGTGGCGGCGCCGCCAGGAGGTCGGCCATAGACACCGCTGCGCCGGAGAGGTCGAATGTTGTCGCCGCTGGTCCATCGTCCTCGGCCGTCAACGCAATTGCCCCCGAAAGGCCTGATACTACCTCTGCCGATGATGAAGACGATGAATCGAATGGGAGCAGCGATGACGATGAGATGCCTGTGCCGGAGGAGCAGCAGGAGCAGCTCGCTGTTGATTCCGAAGCTGGACAGCAGCAGCAGAATCAGCAGCAAAGCTATGATGCTGGAGTTGGGAGCAGTAATGGACAGGAAGGCTACGCATGGGATCCAAATTACTACGCCAATTACGGTGCAAACTATGGCTGGGATCCGAGCGGCAATGTGAACTATGGGACTGAAGCGCAGTATGCGGCATATGGAGGAGAGCACGGTGGAGTGTATGGAAATACATACGGAGTAGAACATGGTGATGGATATGGGCATTCGACGGAAATGGCATATGGAGGGGGCTATGCTGGTGGGTACGAACATAATGCGGCTGCAGCGACAGCACCGCCAATCCAGCAGCCAATACTGCCACCGGAGGTTGGTAGGATTGGAGGGAAGAGAGGTAGGAGCGATATGCCGGCAGAGATTTTAGAGGTTAACCAGGCAGAGCTGATGAAGAACCGACCGAGGGAGGATAAGTCCAAGCTCACTGGGATGGCCTTCGGCCCTAGTTACCAGCCCGCCCCTTCAGCAAAAGGAAAGCCCTCCAAGCTGCACAAAAGAAAGCACCAGATTGGTTCTCTATTCTATGACATGAAGCAAAAGGAGATGGAGCTTGCCGAGAGGCGTTCCAAGGGATTCCTCACAAAAGCAGAGACTCAAGCAAAGTATGGATGGTGAGCATGGTACGTCGGGCATAGGATGGAATTGAACAGTGTATTTCGGTTTTGTTGTCTAATTATTTTGTTGTAAATTGTTCTTGATAATATAAACTGGAATTTAAAACTAGTCGTTGGAAGCAACCTTTTGCACCATTCG]

[+] EMBL AK099377             [GACGACTCTCCGACTCCCACTCCACCTCCAATCGAACCCCACCCGCCGCCGCCGCCGGAGGCGTCTACCCCTGCTATCCTCCCCCGCGCGCCGCCGATCGAATCCGCAAGCCGCGATGGATTCCCTTCTTGCCAACTACGCCTCTTCCGACGACGAGGCCGACGAAACCCTACCCACTCCTCCCGCCGCCGCCGCGGCCCGACCGAAGCCGCCCTCCGGTGGCGGCATCTTCTCGTCGCTCCCGCAGCCCAAGTCGGCGCTCCTCTTCTCCTCCCTCCCGGCGCCCAAATCCGGGCCCGTCTTCTCCGCCATCCCGCCTCCCAAGTCCTCCTCCGGGAACCCTAAGCGGGTCGTGCAGTTCCGCCCGCCTCCGATCCGCCAGCCCACGGGCGAGAGCTCCGACGAGGAGGACGACGACGCCGAGAAGCGCCGCCCTAGCGAGGCCGAGCCGCGCCCGCCCGTATCCGCGGGCACGGGGCCTGTCTCTTCGTTCCTCCCGCCGCCCAAGCGCTCCCTCGGGCTCGGCGGTGGCGGCGCCGCCAGGAGGTCGGCCATAGACACCGCTGCGCCGGAGAGGTCGAATGTTGTCGCCGCTGGTCCATCGTCCTCGGCCGTCAACGCAATTGCCCCCGAAAGGCCTGATACTACCTCTGCCGATGATGAAGACGATGAATCGAATGGGAGCAGCGATGACGATGAGATGCCTGTGCCGGAGGAGCAGCAGGAGCAGCTCGCTGTTGATTCCGAAGCTGGACAGCAGCAGCAGAATCAGCAGCAAAGCTATGATGCTGGAGTTGGGAGCAGTAATGGACAGGAAGGCTACGCATGGGATCCAAATTACTACGCCAATTACGGTGCAAACTATGGCTGGGATCCGAGCGGCAATGTGAACTATGGGACTGAAGCGCAGTATGCGGCATATGGAGGAGAGCACGGTGGAGTGTATGGAAATACATACGGAGTAGAACATGGTGATGGATATGGGCATTCGACGGAAATGGCATATGGAGGGGGCTATGCTGGTGGGTACGAACATAATGCGGCTGCAGCGACAGCACCGCCAATCCAGCAGCCAATACTGCCACCGGAGGTTGGTAGGATTGGAGGGAAGAGAGGTAGGAGCGATATGCCGGCAGAGATTTTAGAGGTTAACCAGGCAGAGCTGATGAAGAACCGACCGAGGGAGGATAAGTCCAAGCTCACTGGGATGGCCTTCGGCCCTAGTTACCAGCCCGCCCCTTCAGCAAAAGGAAAGCCCTCCAAGCTGCACAAAAGAAAGCACCAGATTGGTTCTCTATTCTATGACATGAAGCAAAAGGAGATGGAGCTTGCCGAGAGGCGTTCCAAGGGATTCCTCACAAAAGCAGAGACTCAAGCAAAGTATGGATGGTGAGCATGGTACGTCGGGCATAGGATGGAATTGAACAGTGTATTTCGGTTTTGTTGTCTAATTATTTTGTTGTAAATTGTTCTTGATAATATAAACTGGAATTTAAAACTAGTCGTTGGAAGCAAC               ]
[+] EMBL AK064060             [ ACGACTCTCCGACTCCCACTCCACCTCCAATCGAACCCCACCCGCCGCCGCCGCCGGAGGCGTCTACCCCTGCTCTCCTCCCCCGCGCGCCGCCGATCGAATCCGCAAGCCGCGATGGATTCCCTTCTTGCCAACTACGCCTCTTCCGACGACGAGGCCGACGAAACCCTACCCACTCCTCCCGCCGCCGCCGCGGCCCGACCGAAGCCGCCCTCCGGTGGCGGCATCTTCTCGTCGCTCCCGCAGCCCAAGTCGGCGCTCCTCTTCTCCTCCCTCCCGGCGCCCAAATCCGGGCCCGTCTTCTCCGCCATCCCGCCTCCCAAGTCCTCCTCCGGGAACCCTAAGCGGGTCGTGCAGTTCCGCCCGCCTCCGATCCGCCAGCCCACGGGCGAGAGCTCCGACGAGGAGGACGACGACGCCGAGAAGCGCCGCCCTAGCGAGGCCGAGCCGCGCCCGCCCGTATCCGCGGGCACGGGGCCTGTCTCTTCGTTCCTCCCGCCGCCCAAGCGCTCCCTCGGGCTCGGCGGTGGCGGCGCCGCCAGGAGGTCGGCCATAGACACCGCTGCGCCGGAGAGGTCGAATGTTGTCGCCGCTGGTCCATCGTCCTCGGCCGTCAACGCAATTGCCCCCGAAAGGCCTGATACTACCTCTGCCGATGATGAAGACGATGAATCGAATGGGAGCAGCGATGACGATGAGATGCCTGTGCCGGAGGAGCAGCAGGAGCAGCTCGCTGTTGATTCCGAAGCTGGACAGCAGCAGCAGAATCAGCAGCAAAGCTATGATGCTGGAGTTGGGAGCAGTAATGGACAGGAAGGCTACGCATGGGATCCAAATTACTACGCCAATTACGGTGCAAACTATGGCTGGGATCCGAGCGGCAATGTGAACTATGGGACTGAAGCGCAGTATGCGGCATATGGAGGAGAGCACGGTGGAGTGTATGGAAATACATACGGAGTAGAACATGGTGATGGATATGGGCATTCGACGGAAATGGCATATGGAGGGGGCTATGCTGGTGGGTACGAACATAATGCGGCTGCAGCGACAGCACCGCCAATCCAGCAGCCAATACTGCCACCGGAGGTTGGTAGGATTGGAGGGAAGAGAGGTAGGAGCGATATGCCGGCAGAGATTTTAGAGGTTAACCAGGCAGAGCTGATGAAGAACCGACCGAGGGAGGATAAGTCCAAGCTCACTGGGATGGCCTTCGGCCCTAGTTACCAGCCCGCCCCTTCAGCAAAAGGAAAGCCCTCCAAGCTGCACAAAAGAAAGCACCAGATTGGTTCTCTATTCTATGACATGAAGCAAAAGGAGATGGAGCTTGCCGAGAGGCGTTCCAAGGGATTCCTCACAAAAGCAGAGACTCAAGCAAAGTATGGATGGTGAGCATGGTACGTCGGGCATAGGATGGAATTGAACAGTGTATTTCGGTTTTGTTGTCTAATTATTTTGTTGTAAATTGTTCTTGATAATATAAACTGGAATTTAAAACTAGTCGTTGGAAGCAACCTTTTGCACCATTCG]


>consensus_4465#0 GACGACTCTCCGACTCCCACTCCACCTCCAATCGAACCCCACCCGCCGCCGCCGCCGGAG GCGTCTACCCCTGCTATCCTCCCCCGCGCGCCGCCGATCGAATCCGCAAGCCGCGATGGA TTCCCTTCTTGCCAACTACGCCTCTTCCGACGACGAGGCCGACGAAACCCTACCCACTCC TCCCGCCGCCGCCGCGGCCCGACCGAAGCCGCCCTCCGGTGGCGGCATCTTCTCGTCGCT CCCGCAGCCCAAGTCGGCGCTCCTCTTCTCCTCCCTCCCGGCGCCCAAATCCGGGCCCGT CTTCTCCGCCATCCCGCCTCCCAAGTCCTCCTCCGGGAACCCTAAGCGGGTCGTGCAGTT CCGCCCGCCTCCGATCCGCCAGCCCACGGGCGAGAGCTCCGACGAGGAGGACGACGACGC CGAGAAGCGCCGCCCTAGCGAGGCCGAGCCGCGCCCGCCCGTATCCGCGGGCACGGGGCC TGTCTCTTCGTTCCTCCCGCCGCCCAAGCGCTCCCTCGGGCTCGGCGGTGGCGGCGCCGC CAGGAGGTCGGCCATAGACACCGCTGCGCCGGAGAGGTCGAATGTTGTCGCCGCTGGTCC ATCGTCCTCGGCCGTCAACGCAATTGCCCCCGAAAGGCCTGATACTACCTCTGCCGATGA TGAAGACGATGAATCGAATGGGAGCAGCGATGACGATGAGATGCCTGTGCCGGAGGAGCA GCAGGAGCAGCTCGCTGTTGATTCCGAAGCTGGACAGCAGCAGCAGAATCAGCAGCAAAG CTATGATGCTGGAGTTGGGAGCAGTAATGGACAGGAAGGCTACGCATGGGATCCAAATTA CTACGCCAATTACGGTGCAAACTATGGCTGGGATCCGAGCGGCAATGTGAACTATGGGAC TGAAGCGCAGTATGCGGCATATGGAGGAGAGCACGGTGGAGTGTATGGAAATACATACGG AGTAGAACATGGTGATGGATATGGGCATTCGACGGAAATGGCATATGGAGGGGGCTATGC TGGTGGGTACGAACATAATGCGGCTGCAGCGACAGCACCGCCAATCCAGCAGCCAATACT GCCACCGGAGGTTGGTAGGATTGGAGGGAAGAGAGGTAGGAGCGATATGCCGGCAGAGAT TTTAGAGGTTAACCAGGCAGAGCTGATGAAGAACCGACCGAGGGAGGATAAGTCCAAGCT CACTGGGATGGCCTTCGGCCCTAGTTACCAGCCCGCCCCTTCAGCAAAAGGAAAGCCCTC CAAGCTGCACAAAAGAAAGCACCAGATTGGTTCTCTATTCTATGACATGAAGCAAAAGGA GATGGAGCTTGCCGAGAGGCGTTCCAAGGGATTCCTCACAAAAGCAGAGACTCAAGCAAA GTATGGATGGTGAGCATGGTACGTCGGGCATAGGATGGAATTGAACAGTGTATTTCGGTT TTGTTGTCTAATTATTTTGTTGTAAATTGTTCTTGATAATATAAACTGGAATTTAAAACT AGTCGTTGGAAGCAACCTTTTGCACCATTCG



consensusID : consensus_4465#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 321
fasta sequence
                              [GTTAGAATTGGAGGGAAGAGAGTTAGGACCGATATCCGCCAGAGATTTTAGAGGTTAACCAGCCAGAGCTGATGAAGACCCGCCCGAGGGAGGATAAGTCCCAGCTCACTGGGATGCCCTTCGGCCCTAGTTACCACGCCCGCCCCTTCAGCAAAAGGAAAGCCCTCCAAGCTGCACAAAGAAAGCACCAGATTGGTTCTCTATTCTATGACATGAACCCAAAGGAGATGGAGCTTCCCGAGAGGCGTTCCAAGGGATTCCTCACCAAACCAGAGACTCAACCCAAGTATGGATGGTGACCCTGGTACTTCGGGCCATAGG]

[+] EMBL BI809762             [GTTAGAATTGGAGGGAAGAGAGTTAGGACCGATATCCGCCAGAGATTTTAGAGGTTAACCAGCCAGAGCTGATGAAGACCCGCCCGAGGGAGGATAAGTCCCAGCTCACTGGGATGCCCTTCGGCCCTAGTTACCACGCCCGCCCCTTCAGCAAAAGGAAAGCCCTCCAAGCTGCACAAAGAAAGCACCAGATTGGTTCTCTATTCTATGACATGAACCCAAAGGAGATGGAGCTTCCCGAGAGGCGTTCCAAGGGATTCCTCACCAAACCAGAGACTCAACCCAAGTATGGATGGTGACCCTGGTACTTCGGGCCATAGG]


>consensus_4465#1 GTTAGAATTGGAGGGAAGAGAGTTAGGACCGATATCCGCCAGAGATTTTAGAGGTTAACC AGCCAGAGCTGATGAAGACCCGCCCGAGGGAGGATAAGTCCCAGCTCACTGGGATGCCCT TCGGCCCTAGTTACCACGCCCGCCCCTTCAGCAAAAGGAAAGCCCTCCAAGCTGCACAAA GAAAGCACCAGATTGGTTCTCTATTCTATGACATGAACCCAAAGGAGATGGAGCTTCCCG AGAGGCGTTCCAAGGGATTCCTCACCAAACCAGAGACTCAACCCAAGTATGGATGGTGAC CCTGGTACTTCGGGCCATAGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4465#0      GACGACTCTCCGACTCCCACTCCACCTCCAATCGAACCCCACCCGCCGCCGCCGCCGGAG 60
consensus_4465#1      ------------------------------------------------------------
                                                                                  

consensus_4465#0      GCGTCTACCCCTGCTATCCTCCCCCGCGCGCCGCCGATCGAATCCGCAAGCCGCGATGGA 120
consensus_4465#1      ------------------------------------------------------------
                                                                                  

consensus_4465#0      TTCCCTTCTTGCCAACTACGCCTCTTCCGACGACGAGGCCGACGAAACCCTACCCACTCC 180
consensus_4465#1      ------------------------------------------------------------
                                                                                  

consensus_4465#0      TCCCGCCGCCGCCGCGGCCCGACCGAAGCCGCCCTCCGGTGGCGGCATCTTCTCGTCGCT 240
consensus_4465#1      ------------------------------------------------------------
                                                                                  

consensus_4465#0      CCCGCAGCCCAAGTCGGCGCTCCTCTTCTCCTCCCTCCCGGCGCCCAAATCCGGGCCCGT 300
consensus_4465#1      ------------------------------------------------------------
                                                                                  

consensus_4465#0      CTTCTCCGCCATCCCGCCTCCCAAGTCCTCCTCCGGGAACCCTAAGCGGGTCGTGCAGTT 360
consensus_4465#1      ------------------------------------------------------------
                                                                                  

consensus_4465#0      CCGCCCGCCTCCGATCCGCCAGCCCACGGGCGAGAGCTCCGACGAGGAGGACGACGACGC 420
consensus_4465#1      ------------------------------------------------------------
                                                                                  

consensus_4465#0      CGAGAAGCGCCGCCCTAGCGAGGCCGAGCCGCGCCCGCCCGTATCCGCGGGCACGGGGCC 480
consensus_4465#1      ------------------------------------------------------------
                                                                                  

consensus_4465#0      TGTCTCTTCGTTCCTCCCGCCGCCCAAGCGCTCCCTCGGGCTCGGCGGTGGCGGCGCCGC 540
consensus_4465#1      ------------------------------------------------------------
                                                                                  

consensus_4465#0      CAGGAGGTCGGCCATAGACACCGCTGCGCCGGAGAGGTCGAATGTTGTCGCCGCTGGTCC 600
consensus_4465#1      ------------------------------------------------------------
                                                                                  

consensus_4465#0      ATCGTCCTCGGCCGTCAACGCAATTGCCCCCGAAAGGCCTGATACTACCTCTGCCGATGA 660
consensus_4465#1      ------------------------------------------------------------
                                                                                  

consensus_4465#0      TGAAGACGATGAATCGAATGGGAGCAGCGATGACGATGAGATGCCTGTGCCGGAGGAGCA 720
consensus_4465#1      ------------------------------------------------------------
                                                                                  

consensus_4465#0      GCAGGAGCAGCTCGCTGTTGATTCCGAAGCTGGACAGCAGCAGCAGAATCAGCAGCAAAG 780
consensus_4465#1      ------------------------------------------------------------
                                                                                  

consensus_4465#0      CTATGATGCTGGAGTTGGGAGCAGTAATGGACAGGAAGGCTACGCATGGGATCCAAATTA 840
consensus_4465#1      ------------------------------------------------------------
                                                                                  

consensus_4465#0      CTACGCCAATTACGGTGCAAACTATGGCTGGGATCCGAGCGGCAATGTGAACTATGGGAC 900
consensus_4465#1      ------------------------------------------------------------
                                                                                  

consensus_4465#0      TGAAGCGCAGTATGCGGCATATGGAGGAGAGCACGGTGGAGTGTATGGAAATACATACGG 960
consensus_4465#1      ------------------------------------------------------------
                                                                                  

consensus_4465#0      AGTAGAACATGGTGATGGATATGGGCATTCGACGGAAATGGCATATGGAGGGGGCTATGC 1020
consensus_4465#1      ------------------------------------------------------------
                                                                                  

consensus_4465#0      TGGTGGGTACGAACATAATGCGGCTGCAGCGACAGCACCGCCAATCCAGCAGCCAATACT 1080
consensus_4465#1      ------------------------------------------------------------
                                                                                  

consensus_4465#0      GCCACCGGAGGTTGGTAGGATTGGAGGGAAGAGAGGTAGGAGCGATATGCCGGCAGAGAT 1140
consensus_4465#1      -------------GTTAGAATTGGAGGGAAGAGAGTTAGGACCGATAT-CCGCCAGAGAT 46
                                   * *** **************** ***** ****** *** *******

consensus_4465#0      TTTAGAGGTTAACCAGGCAGAGCTGATGAAGAACCGACCGAGGGAGGATAAGTCCAAGCT 1200
consensus_4465#1      TTTAGAGGTTAACCAGCCAGAGCTGATGAAGACCCGCCCGAGGGAGGATAAGTCCCAGCT 106
                      **************** *************** *** ****************** ****

consensus_4465#0      CACTGGGATGGCCTTCGGCCCTAGTTACCA-GCCCGCCCCTTCAGCAAAAGGAAAGCCCT 1259
consensus_4465#1      CACTGGGATGCCCTTCGGCCCTAGTTACCACGCCCGCCCCTTCAGCAAAAGGAAAGCCCT 166
                      ********** ******************* *****************************

consensus_4465#0      CCAAGCTGCACAAAAGAAAGCACCAGATTGGTTCTCTATTCTATGACATGAAGCAAAAGG 1319
consensus_4465#1      CCAAGCTGCACAAA-GAAAGCACCAGATTGGTTCTCTATTCTATGACATGAACCCAAAGG 225
                      ************** ************************************* * *****

consensus_4465#0      AGATGGAGCTTGCCGAGAGGCGTTCCAAGGGATTCCTCACAAAAGCAGAGACTCAAGCAA 1379
consensus_4465#1      AGATGGAGCTTCCCGAGAGGCGTTCCAAGGGATTCCTCACCAAACCAGAGACTCAACCCA 285
                      *********** **************************** *** *********** * *

consensus_4465#0      AGTATGGATGGTGAGCATGGTACGTCGGGC-ATAGGATGGAATTGAACAGTGTATTTCGG 1438
consensus_4465#1      AGTATGGATGGTGACCCTGGTACTTCGGGCCATAGG------------------------ 321
                      ************** * ****** ****** *****                        

consensus_4465#0      TTTTGTTGTCTAATTATTTTGTTGTAAATTGTTCTTGATAATATAAACTGGAATTTAAAA 1498
consensus_4465#1      ------------------------------------------------------------
                                                                                  

consensus_4465#0      CTAGTCGTTGGAAGCAACCTTTTGCACCATTCG 1531
consensus_4465#1      ---------------------------------
                                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)