These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4465#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1531 fasta sequence [GACGACTCTCCGACTCCCACTCCACCTCCAATCGAACCCCACCCGCCGCCGCCGCCGGAGGCGTCTACCCCTGCTATCCTCCCCCGCGCGCCGCCGATCGAATCCGCAAGCCGCGATGGATTCCCTTCTTGCCAACTACGCCTCTTCCGACGACGAGGCCGACGAAACCCTACCCACTCCTCCCGCCGCCGCCGCGGCCCGACCGAAGCCGCCCTCCGGTGGCGGCATCTTCTCGTCGCTCCCGCAGCCCAAGTCGGCGCTCCTCTTCTCCTCCCTCCCGGCGCCCAAATCCGGGCCCGTCTTCTCCGCCATCCCGCCTCCCAAGTCCTCCTCCGGGAACCCTAAGCGGGTCGTGCAGTTCCGCCCGCCTCCGATCCGCCAGCCCACGGGCGAGAGCTCCGACGAGGAGGACGACGACGCCGAGAAGCGCCGCCCTAGCGAGGCCGAGCCGCGCCCGCCCGTATCCGCGGGCACGGGGCCTGTCTCTTCGTTCCTCCCGCCGCCCAAGCGCTCCCTCGGGCTCGGCGGTGGCGGCGCCGCCAGGAGGTCGGCCATAGACACCGCTGCGCCGGAGAGGTCGAATGTTGTCGCCGCTGGTCCATCGTCCTCGGCCGTCAACGCAATTGCCCCCGAAAGGCCTGATACTACCTCTGCCGATGATGAAGACGATGAATCGAATGGGAGCAGCGATGACGATGAGATGCCTGTGCCGGAGGAGCAGCAGGAGCAGCTCGCTGTTGATTCCGAAGCTGGACAGCAGCAGCAGAATCAGCAGCAAAGCTATGATGCTGGAGTTGGGAGCAGTAATGGACAGGAAGGCTACGCATGGGATCCAAATTACTACGCCAATTACGGTGCAAACTATGGCTGGGATCCGAGCGGCAATGTGAACTATGGGACTGAAGCGCAGTATGCGGCATATGGAGGAGAGCACGGTGGAGTGTATGGAAATACATACGGAGTAGAACATGGTGATGGATATGGGCATTCGACGGAAATGGCATATGGAGGGGGCTATGCTGGTGGGTACGAACATAATGCGGCTGCAGCGACAGCACCGCCAATCCAGCAGCCAATACTGCCACCGGAGGTTGGTAGGATTGGAGGGAAGAGAGGTAGGAGCGATATGCCGGCAGAGATTTTAGAGGTTAACCAGGCAGAGCTGATGAAGAACCGACCGAGGGAGGATAAGTCCAAGCTCACTGGGATGGCCTTCGGCCCTAGTTACCAGCCCGCCCCTTCAGCAAAAGGAAAGCCCTCCAAGCTGCACAAAAGAAAGCACCAGATTGGTTCTCTATTCTATGACATGAAGCAAAAGGAGATGGAGCTTGCCGAGAGGCGTTCCAAGGGATTCCTCACAAAAGCAGAGACTCAAGCAAAGTATGGATGGTGAGCATGGTACGTCGGGCATAGGATGGAATTGAACAGTGTATTTCGGTTTTGTTGTCTAATTATTTTGTTGTAAATTGTTCTTGATAATATAAACTGGAATTTAAAACTAGTCGTTGGAAGCAACCTTTTGCACCATTCG] [+] EMBL AK099377 [GACGACTCTCCGACTCCCACTCCACCTCCAATCGAACCCCACCCGCCGCCGCCGCCGGAGGCGTCTACCCCTGCTATCCTCCCCCGCGCGCCGCCGATCGAATCCGCAAGCCGCGATGGATTCCCTTCTTGCCAACTACGCCTCTTCCGACGACGAGGCCGACGAAACCCTACCCACTCCTCCCGCCGCCGCCGCGGCCCGACCGAAGCCGCCCTCCGGTGGCGGCATCTTCTCGTCGCTCCCGCAGCCCAAGTCGGCGCTCCTCTTCTCCTCCCTCCCGGCGCCCAAATCCGGGCCCGTCTTCTCCGCCATCCCGCCTCCCAAGTCCTCCTCCGGGAACCCTAAGCGGGTCGTGCAGTTCCGCCCGCCTCCGATCCGCCAGCCCACGGGCGAGAGCTCCGACGAGGAGGACGACGACGCCGAGAAGCGCCGCCCTAGCGAGGCCGAGCCGCGCCCGCCCGTATCCGCGGGCACGGGGCCTGTCTCTTCGTTCCTCCCGCCGCCCAAGCGCTCCCTCGGGCTCGGCGGTGGCGGCGCCGCCAGGAGGTCGGCCATAGACACCGCTGCGCCGGAGAGGTCGAATGTTGTCGCCGCTGGTCCATCGTCCTCGGCCGTCAACGCAATTGCCCCCGAAAGGCCTGATACTACCTCTGCCGATGATGAAGACGATGAATCGAATGGGAGCAGCGATGACGATGAGATGCCTGTGCCGGAGGAGCAGCAGGAGCAGCTCGCTGTTGATTCCGAAGCTGGACAGCAGCAGCAGAATCAGCAGCAAAGCTATGATGCTGGAGTTGGGAGCAGTAATGGACAGGAAGGCTACGCATGGGATCCAAATTACTACGCCAATTACGGTGCAAACTATGGCTGGGATCCGAGCGGCAATGTGAACTATGGGACTGAAGCGCAGTATGCGGCATATGGAGGAGAGCACGGTGGAGTGTATGGAAATACATACGGAGTAGAACATGGTGATGGATATGGGCATTCGACGGAAATGGCATATGGAGGGGGCTATGCTGGTGGGTACGAACATAATGCGGCTGCAGCGACAGCACCGCCAATCCAGCAGCCAATACTGCCACCGGAGGTTGGTAGGATTGGAGGGAAGAGAGGTAGGAGCGATATGCCGGCAGAGATTTTAGAGGTTAACCAGGCAGAGCTGATGAAGAACCGACCGAGGGAGGATAAGTCCAAGCTCACTGGGATGGCCTTCGGCCCTAGTTACCAGCCCGCCCCTTCAGCAAAAGGAAAGCCCTCCAAGCTGCACAAAAGAAAGCACCAGATTGGTTCTCTATTCTATGACATGAAGCAAAAGGAGATGGAGCTTGCCGAGAGGCGTTCCAAGGGATTCCTCACAAAAGCAGAGACTCAAGCAAAGTATGGATGGTGAGCATGGTACGTCGGGCATAGGATGGAATTGAACAGTGTATTTCGGTTTTGTTGTCTAATTATTTTGTTGTAAATTGTTCTTGATAATATAAACTGGAATTTAAAACTAGTCGTTGGAAGCAAC ] [+] EMBL AK064060 [ ACGACTCTCCGACTCCCACTCCACCTCCAATCGAACCCCACCCGCCGCCGCCGCCGGAGGCGTCTACCCCTGCTCTCCTCCCCCGCGCGCCGCCGATCGAATCCGCAAGCCGCGATGGATTCCCTTCTTGCCAACTACGCCTCTTCCGACGACGAGGCCGACGAAACCCTACCCACTCCTCCCGCCGCCGCCGCGGCCCGACCGAAGCCGCCCTCCGGTGGCGGCATCTTCTCGTCGCTCCCGCAGCCCAAGTCGGCGCTCCTCTTCTCCTCCCTCCCGGCGCCCAAATCCGGGCCCGTCTTCTCCGCCATCCCGCCTCCCAAGTCCTCCTCCGGGAACCCTAAGCGGGTCGTGCAGTTCCGCCCGCCTCCGATCCGCCAGCCCACGGGCGAGAGCTCCGACGAGGAGGACGACGACGCCGAGAAGCGCCGCCCTAGCGAGGCCGAGCCGCGCCCGCCCGTATCCGCGGGCACGGGGCCTGTCTCTTCGTTCCTCCCGCCGCCCAAGCGCTCCCTCGGGCTCGGCGGTGGCGGCGCCGCCAGGAGGTCGGCCATAGACACCGCTGCGCCGGAGAGGTCGAATGTTGTCGCCGCTGGTCCATCGTCCTCGGCCGTCAACGCAATTGCCCCCGAAAGGCCTGATACTACCTCTGCCGATGATGAAGACGATGAATCGAATGGGAGCAGCGATGACGATGAGATGCCTGTGCCGGAGGAGCAGCAGGAGCAGCTCGCTGTTGATTCCGAAGCTGGACAGCAGCAGCAGAATCAGCAGCAAAGCTATGATGCTGGAGTTGGGAGCAGTAATGGACAGGAAGGCTACGCATGGGATCCAAATTACTACGCCAATTACGGTGCAAACTATGGCTGGGATCCGAGCGGCAATGTGAACTATGGGACTGAAGCGCAGTATGCGGCATATGGAGGAGAGCACGGTGGAGTGTATGGAAATACATACGGAGTAGAACATGGTGATGGATATGGGCATTCGACGGAAATGGCATATGGAGGGGGCTATGCTGGTGGGTACGAACATAATGCGGCTGCAGCGACAGCACCGCCAATCCAGCAGCCAATACTGCCACCGGAGGTTGGTAGGATTGGAGGGAAGAGAGGTAGGAGCGATATGCCGGCAGAGATTTTAGAGGTTAACCAGGCAGAGCTGATGAAGAACCGACCGAGGGAGGATAAGTCCAAGCTCACTGGGATGGCCTTCGGCCCTAGTTACCAGCCCGCCCCTTCAGCAAAAGGAAAGCCCTCCAAGCTGCACAAAAGAAAGCACCAGATTGGTTCTCTATTCTATGACATGAAGCAAAAGGAGATGGAGCTTGCCGAGAGGCGTTCCAAGGGATTCCTCACAAAAGCAGAGACTCAAGCAAAGTATGGATGGTGAGCATGGTACGTCGGGCATAGGATGGAATTGAACAGTGTATTTCGGTTTTGTTGTCTAATTATTTTGTTGTAAATTGTTCTTGATAATATAAACTGGAATTTAAAACTAGTCGTTGGAAGCAACCTTTTGCACCATTCG] consensusID : consensus_4465#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 321 fasta sequence [GTTAGAATTGGAGGGAAGAGAGTTAGGACCGATATCCGCCAGAGATTTTAGAGGTTAACCAGCCAGAGCTGATGAAGACCCGCCCGAGGGAGGATAAGTCCCAGCTCACTGGGATGCCCTTCGGCCCTAGTTACCACGCCCGCCCCTTCAGCAAAAGGAAAGCCCTCCAAGCTGCACAAAGAAAGCACCAGATTGGTTCTCTATTCTATGACATGAACCCAAAGGAGATGGAGCTTCCCGAGAGGCGTTCCAAGGGATTCCTCACCAAACCAGAGACTCAACCCAAGTATGGATGGTGACCCTGGTACTTCGGGCCATAGG] [+] EMBL BI809762 [GTTAGAATTGGAGGGAAGAGAGTTAGGACCGATATCCGCCAGAGATTTTAGAGGTTAACCAGCCAGAGCTGATGAAGACCCGCCCGAGGGAGGATAAGTCCCAGCTCACTGGGATGCCCTTCGGCCCTAGTTACCACGCCCGCCCCTTCAGCAAAAGGAAAGCCCTCCAAGCTGCACAAAGAAAGCACCAGATTGGTTCTCTATTCTATGACATGAACCCAAAGGAGATGGAGCTTCCCGAGAGGCGTTCCAAGGGATTCCTCACCAAACCAGAGACTCAACCCAAGTATGGATGGTGACCCTGGTACTTCGGGCCATAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4465#0 GACGACTCTCCGACTCCCACTCCACCTCCAATCGAACCCCACCCGCCGCCGCCGCCGGAG 60 consensus_4465#1 ------------------------------------------------------------ consensus_4465#0 GCGTCTACCCCTGCTATCCTCCCCCGCGCGCCGCCGATCGAATCCGCAAGCCGCGATGGA 120 consensus_4465#1 ------------------------------------------------------------ consensus_4465#0 TTCCCTTCTTGCCAACTACGCCTCTTCCGACGACGAGGCCGACGAAACCCTACCCACTCC 180 consensus_4465#1 ------------------------------------------------------------ consensus_4465#0 TCCCGCCGCCGCCGCGGCCCGACCGAAGCCGCCCTCCGGTGGCGGCATCTTCTCGTCGCT 240 consensus_4465#1 ------------------------------------------------------------ consensus_4465#0 CCCGCAGCCCAAGTCGGCGCTCCTCTTCTCCTCCCTCCCGGCGCCCAAATCCGGGCCCGT 300 consensus_4465#1 ------------------------------------------------------------ consensus_4465#0 CTTCTCCGCCATCCCGCCTCCCAAGTCCTCCTCCGGGAACCCTAAGCGGGTCGTGCAGTT 360 consensus_4465#1 ------------------------------------------------------------ consensus_4465#0 CCGCCCGCCTCCGATCCGCCAGCCCACGGGCGAGAGCTCCGACGAGGAGGACGACGACGC 420 consensus_4465#1 ------------------------------------------------------------ consensus_4465#0 CGAGAAGCGCCGCCCTAGCGAGGCCGAGCCGCGCCCGCCCGTATCCGCGGGCACGGGGCC 480 consensus_4465#1 ------------------------------------------------------------ consensus_4465#0 TGTCTCTTCGTTCCTCCCGCCGCCCAAGCGCTCCCTCGGGCTCGGCGGTGGCGGCGCCGC 540 consensus_4465#1 ------------------------------------------------------------ consensus_4465#0 CAGGAGGTCGGCCATAGACACCGCTGCGCCGGAGAGGTCGAATGTTGTCGCCGCTGGTCC 600 consensus_4465#1 ------------------------------------------------------------ consensus_4465#0 ATCGTCCTCGGCCGTCAACGCAATTGCCCCCGAAAGGCCTGATACTACCTCTGCCGATGA 660 consensus_4465#1 ------------------------------------------------------------ consensus_4465#0 TGAAGACGATGAATCGAATGGGAGCAGCGATGACGATGAGATGCCTGTGCCGGAGGAGCA 720 consensus_4465#1 ------------------------------------------------------------ consensus_4465#0 GCAGGAGCAGCTCGCTGTTGATTCCGAAGCTGGACAGCAGCAGCAGAATCAGCAGCAAAG 780 consensus_4465#1 ------------------------------------------------------------ consensus_4465#0 CTATGATGCTGGAGTTGGGAGCAGTAATGGACAGGAAGGCTACGCATGGGATCCAAATTA 840 consensus_4465#1 ------------------------------------------------------------ consensus_4465#0 CTACGCCAATTACGGTGCAAACTATGGCTGGGATCCGAGCGGCAATGTGAACTATGGGAC 900 consensus_4465#1 ------------------------------------------------------------ consensus_4465#0 TGAAGCGCAGTATGCGGCATATGGAGGAGAGCACGGTGGAGTGTATGGAAATACATACGG 960 consensus_4465#1 ------------------------------------------------------------ consensus_4465#0 AGTAGAACATGGTGATGGATATGGGCATTCGACGGAAATGGCATATGGAGGGGGCTATGC 1020 consensus_4465#1 ------------------------------------------------------------ consensus_4465#0 TGGTGGGTACGAACATAATGCGGCTGCAGCGACAGCACCGCCAATCCAGCAGCCAATACT 1080 consensus_4465#1 ------------------------------------------------------------ consensus_4465#0 GCCACCGGAGGTTGGTAGGATTGGAGGGAAGAGAGGTAGGAGCGATATGCCGGCAGAGAT 1140 consensus_4465#1 -------------GTTAGAATTGGAGGGAAGAGAGTTAGGACCGATAT-CCGCCAGAGAT 46 * *** **************** ***** ****** *** ******* consensus_4465#0 TTTAGAGGTTAACCAGGCAGAGCTGATGAAGAACCGACCGAGGGAGGATAAGTCCAAGCT 1200 consensus_4465#1 TTTAGAGGTTAACCAGCCAGAGCTGATGAAGACCCGCCCGAGGGAGGATAAGTCCCAGCT 106 **************** *************** *** ****************** **** consensus_4465#0 CACTGGGATGGCCTTCGGCCCTAGTTACCA-GCCCGCCCCTTCAGCAAAAGGAAAGCCCT 1259 consensus_4465#1 CACTGGGATGCCCTTCGGCCCTAGTTACCACGCCCGCCCCTTCAGCAAAAGGAAAGCCCT 166 ********** ******************* ***************************** consensus_4465#0 CCAAGCTGCACAAAAGAAAGCACCAGATTGGTTCTCTATTCTATGACATGAAGCAAAAGG 1319 consensus_4465#1 CCAAGCTGCACAAA-GAAAGCACCAGATTGGTTCTCTATTCTATGACATGAACCCAAAGG 225 ************** ************************************* * ***** consensus_4465#0 AGATGGAGCTTGCCGAGAGGCGTTCCAAGGGATTCCTCACAAAAGCAGAGACTCAAGCAA 1379 consensus_4465#1 AGATGGAGCTTCCCGAGAGGCGTTCCAAGGGATTCCTCACCAAACCAGAGACTCAACCCA 285 *********** **************************** *** *********** * * consensus_4465#0 AGTATGGATGGTGAGCATGGTACGTCGGGC-ATAGGATGGAATTGAACAGTGTATTTCGG 1438 consensus_4465#1 AGTATGGATGGTGACCCTGGTACTTCGGGCCATAGG------------------------ 321 ************** * ****** ****** ***** consensus_4465#0 TTTTGTTGTCTAATTATTTTGTTGTAAATTGTTCTTGATAATATAAACTGGAATTTAAAA 1498 consensus_4465#1 ------------------------------------------------------------ consensus_4465#0 CTAGTCGTTGGAAGCAACCTTTTGCACCATTCG 1531 consensus_4465#1 --------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||