cluster # 4466

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4466 cluster # 4466 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4466#0 length = 664 sequences # 2

consensus_4466#1 length = 518 sequences # 1

consensusID : consensus_4466#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 664
fasta sequence

                              [GCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGAGTCTGCGGATTAAAGCCCATCTTTTCGCGTATCACTCCCTCGGCCAGCATCTCATCATTAAATTCACATTTGTGATATAAGATTTTCAGCAACGCCTGTTGGCG-GGGAATTTTGGCAATATATTGCAAGCCGACAATCAATTTTTCACGCAATTGTTGAAACGGGTCATGCTCTAATCCAGCCGTCAAGTGTTCCTGGATTAACTCCCGCAATGAAGGCTGTTGCAACCACATCTCATTAAACAGTTGAGTCTTGTTTTCGAAGTGCCAGTAGATAGCGCCACGCGTAACGTTAGCGGCGTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGTCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAGGTTAATCTATCACCTAATGTGTATTTATACGAGAGGCTAATATTGAGTTGCTATAAATCGTTAAATAAATAATATATATTATTTACCTAAGATACATTCACTACATCAATATATATTTCAATTTACGAGGTTTTAATTCTGCCTCTTTC]

[+] EMBL CF306022             [GCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGAGTCTGCGGATTAAAGCCCATCTTTTCGCGTATCACTCCCTCGGCCAGCATCTCATCATTAAATTCACATTTGTGATATAAGATTTTCAGCAACGCCTGTTGGCG GGGAATTTTGGCAATATATTGCAAGCCGACAATCAATTTTTCACGCAATTGTTGAAACGGGTCATGCTCTAATCCAGCCGTCAAGTGTTCCTGGATTAACTCCCGCAATGAAGGCTGTTGCAACCACATCTCATTAAACAGTTGAGTCTTGTTTTCGAAGTGCCAGTAGATAGCGCCACGCGTAACGTTAGCGGCGTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGTCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAGGTTAATCTATCACCTAATGTGTATTTATACGAGAGGCTAATATTGAGTTGCTATAAATCGTTAAATAAATAATATATATTATTTACCTAAGATACATTCACTACATCAATATATATTTCAATTTACGAGGTTTTAATTCTGCCTCTTTC]
[+] EMBL CF306050             [ CGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGAGTCTGCGGATTAAAGCCCATCTTTTCGCGTATCACTCCCTCGGCCAGCATCTCATCATTAAATTCACATTTGTGATATAAGATTTTCAGCAACGCCTGTTTGTGTGGGAATTTTGGCAATATATTGCAAGCCGACAATCAATANTTCACTCAATTGTTGAAACGGGTCATGCTCTAATCCAGCCGTCAAGTGTTCCTGGATTAACTCCCGCAATGAAGGCTGTTGCAACCACATCTCATTAAACAGTTGAGTCTTGTTTTCGAAGTGCCAGTAGATAGCGCCACGCGTAACGTTAGCGGCGTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGTCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACA                                                                                                                                                                        ]




>consensus_4466#0
GCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGAGTCTGCGGATTAAAG
CCCATCTTTTCGCGTATCACTCCCTCGGCCAGCATCTCATCATTAAATTCACATTTGTGA
TATAAGATTTTCAGCAACGCCTGTTGGCGGGGAATTTTGGCAATATATTGCAAGCCGACA
ATCAATTTTTCACGCAATTGTTGAAACGGGTCATGCTCTAATCCAGCCGTCAAGTGTTCC
TGGATTAACTCCCGCAATGAAGGCTGTTGCAACCACATCTCATTAAACAGTTGAGTCTTG
TTTTCGAAGTGCCAGTAGATAGCGCCACGCGTAACGTTAGCGGCGTCGGCAATGTCGTTG
AGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCT
TGCCGGGTCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAAT
AAATATATTCGACACAGAGTGAGAAAATAGCGAAGGTTAATCTATCACCTAATGTGTATT
TATACGAGAGGCTAATATTGAGTTGCTATAAATCGTTAAATAAATAATATATATTATTTA
CCTAAGATACATTCACTACATCAATATATATTTCAATTTACGAGGTTTTAATTCTGCCTC
TTTC

consensusID : consensus_4466#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 518
fasta sequence

                              [TGATCGCGCAGTAAATCCGCCACTTTAAATTCAGCATTACCCGTCTGACGCGTGCCTAACAATTCGCCAGGGCCGCGAATCTCCAGATCTTTTTGCGCAATCACAAAACCGTCGTTACTGTCGCGCAGCACTTGCAGGCGAATTTGCGCCGTTTTAGAAAGCGGCGTTTTGTAGAGCAGCACGCAGTGAGAAGCCACCGCGCCACGACCTACGCGCCCGCGCAGCTGGTGTAACTGCGCCAGACCCAGACGCTCCGGGTTTTCGATAATCATCAGACTGGCGTTAGGCACATCAACGCCGACTTCAATAACGGTTGTGGCAACCAGCAGGTGTAGCTCACCTTGTTTAAACGACGCCATCACCGCCTGTTTCTCGGCAGGTTTCATCCGCCCGTGTACCAGGCCAACGTTCAACTCTGGTAGCGCCAGTTTCAACTCTTCCCAGGTAGCTTCCGCCGCCTGCGCTTCCAGCAATTCCGACTCTTCAATCAACGTACAAACCCAGTATGCCTGACGACC]

[+] EMBL CF305656             [TGATCGCGCAGTAAATCCGCCACTTTAAATTCAGCATTACCCGTCTGACGCGTGCCTAACAATTCGCCAGGGCCGCGAATCTCCAGATCTTTTTGCGCAATCACAAAACCGTCGTTACTGTCGCGCAGCACTTGCAGGCGAATTTGCGCCGTTTTAGAAAGCGGCGTTTTGTAGAGCAGCACGCAGTGAGAAGCCACCGCGCCACGACCTACGCGCCCGCGCAGCTGGTGTAACTGCGCCAGACCCAGACGCTCCGGGTTTTCGATAATCATCAGACTGGCGTTAGGCACATCAACGCCGACTTCAATAACGGTTGTGGCAACCAGCAGGTGTAGCTCACCTTGTTTAAACGACGCCATCACCGCCTGTTTCTCGGCAGGTTTCATCCGCCCGTGTACCAGGCCAACGTTCAACTCTGGTAGCGCCAGTTTCAACTCTTCCCAGGTAGCTTCCGCCGCCTGCGCTTCCAGCAATTCCGACTCTTCAATCAACGTACAAACCCAGTATGCCTGACGACC]




>consensus_4466#1
TGATCGCGCAGTAAATCCGCCACTTTAAATTCAGCATTACCCGTCTGACGCGTGCCTAAC
AATTCGCCAGGGCCGCGAATCTCCAGATCTTTTTGCGCAATCACAAAACCGTCGTTACTG
TCGCGCAGCACTTGCAGGCGAATTTGCGCCGTTTTAGAAAGCGGCGTTTTGTAGAGCAGC
ACGCAGTGAGAAGCCACCGCGCCACGACCTACGCGCCCGCGCAGCTGGTGTAACTGCGCC
AGACCCAGACGCTCCGGGTTTTCGATAATCATCAGACTGGCGTTAGGCACATCAACGCCG
ACTTCAATAACGGTTGTGGCAACCAGCAGGTGTAGCTCACCTTGTTTAAACGACGCCATC
ACCGCCTGTTTCTCGGCAGGTTTCATCCGCCCGTGTACCAGGCCAACGTTCAACTCTGGT
AGCGCCAGTTTCAACTCTTCCCAGGTAGCTTCCGCCGCCTGCGCTTCCAGCAATTCCGAC
TCTTCAATCAACGTACAAACCCAGTATGCCTGACGACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4466#0      GCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGAGTCTGCGGATTAAAG 60
consensus_4466#1      ---------------------TGATCGCGCAGTAAATCCGCCACTTTAAATTCAGCATTA 39
                                           **** *****  **   *   *   *      *  *   

consensus_4466#0      CCCATCTTTTCGCGTATCACTCCCTCGGCCAGCATCTC--ATCATTAAATTCACATTTGT 118
consensus_4466#1      CCCGTCTGA-CGCGTGCCTAACAATTCGCCAGGGCCGCGAATCTCCAGATCTTTTTGCGC 98
                      *** ***   *****  *   *  *  *****   * *  ***   * **     *  * 

consensus_4466#0      GAT-ATAAGATTTTCAGCAACGCC------TGTTGGCGGGGAATTTTGGCAATATATTGC 171
consensus_4466#1      AATCACAAAACCGTCGTTACTGTCGCGCAGCACTTGCAGGCGAATTTG-CGCCGTTTTAG 157
                       ** * ** *   **   *  * *         * ** **  * **** *    * **  

consensus_4466#0      AAGCCGACAATCAATTTTTCACGCAATTGTTGAAACGGGTCATGCTCTAATCCAGCCGTC 231
consensus_4466#1      AAAGCGGCGTTTTGTAGAGCAGCACGCAGTGAGAAGCCACCGCGCCACGACCTACGCGCC 217
                      **  ** *  *   *    **       **   **     *  **    * * *  ** *

consensus_4466#0      AAGTGTTCCTGGATTAACTCCCGCAATGAAGGCTGTTGCAACCACATCTCATTAAACAGT 291
consensus_4466#1      C-GCGCAGCTGGTGTAACT---GCGCCAGACCCAGACGCTCCGGGTTTTCGATAATCA-- 271
                        * *   ****  *****   **     *  * *  **  *    * **  *** **  

consensus_4466#0      TGAGTCTTGTTTTCGAAGTGCCAGTAGATAGCGCCACGCGTAACGTTAGCGGCG-TCGGC 350
consensus_4466#1      TCAGACTGGCGTTAGGCACATCA----ACGCCGACTTCAATAACGGTTGTGGCAACCAGC 327
                      * ** ** *  ** *      **    *   ** *     ***** * * ***   * **

consensus_4466#0      AATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTG-CGCAAACTGGGCGATGGCAGTTT 409
consensus_4466#1      AG----GTGTAGC-TCACCTTGTTTAAACGACGCCATCACCGCCTGTTTCTCGGCAGGTT 382
                      *     **  *** **  **** ***  * * **   * *   ***      ***** **

consensus_4466#0      CAATCAGTTCTTG--CCGGGTCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAA 467
consensus_4466#1      TCATCCGCCCGTGTACCAGGCC----AACGTTCAACTCTGGTAGC----GCCAGTTTCAA 434
                        *** *  * **  ** ** *     *  ***  ** ****       ****   * **

consensus_4466#0      TTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAGGTTAATCTATCA 527
consensus_4466#1      CTCTTCCC-AGGTAGCTTCCGCCGCCTGCGCTTCCAGCAATTCCGACTCTTCAATCAACG 493
                       * ***   *  **  *     ** *   *  *     ***  ***   ** *   * * 

consensus_4466#0      CCTAATGTGTATTTATACGAGAGGCTAATATTGAGTTGCTATAAATCGTTAAATAAATAA 587
consensus_4466#1      TACAAACCCAGTATGCCTGACGACC----------------------------------- 518
                         **      * *    **    *                                   

consensus_4466#0      TATATATTATTTACCTAAGATACATTCACTACATCAATATATATTTCAATTTACGAGGTT 647
consensus_4466#1      ------------------------------------------------------------
                                                                                  

consensus_4466#0      TTAATTCTGCCTCTTTC 664
consensus_4466#1      -----------------