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Oryza sativa
cluster # 4470 cluster # 4470       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4470#0 length = 845 sequences # 1  
consensus_4470#1 length = 500 sequences # 1  
consensus_4470#2 length = 363 sequences # 1  

consensusID : consensus_4470#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 845
fasta sequence
                              [TTTGGTTCTTATATCGATCGCCGCTGATGGTGATATGATGTTTACCTTTACCATTGGTCCGTATTCGCTGAGCATCCGTTCAAGTCTCTCTCTTTCTCTGTGTTTGTTTGTTTTTTTTTTTGCCAGATCTGATTCTGTTTTCTCTTCATTTGGGCGATTTGGTTTGGTTAACGAGGGACCTGGGGATGAACTGCTTTCCTACGTGCGGTATTGTCCAAGTTTACCCCTCGGATACCCATCTGCATATGGCTCCCAAATCCTTTGCATCGCTATGTCACTAGTGTTGCAGATCGGGATCTCGTTTGCGACATCATCTAATCGAAAAGATTCGAATGTTGTTCTTTTTTGGGGTTGATCTCGCGAAGATCCCAGCAGAGAGGTGTGTGCACTCCATGGTTGAGGCCTCTCTAACAAATCTTTATCTTCGCATAGGAAGGAACAGAGGCCGTGAATTCGTGGATGTGTGATTGGTTTATGGTTCCATTACATCTGTAGCCACGGTTACATCTTTCTTGACATAGCGAGATCTCTCTCGTCTGGTGCTTATGAATGAAGTAATTGATGATTGCTCCTCCCTGCGAGAGCATCAAGCAAACGAGGGACCTATAGATGGACAGCTTTTCCCCGTGCTGNTCAGACCAAGTTTGCCCTCGGAAAGAATCATGCAATCTGGNTACCAATCTTGCAAAAACCAAACTTTTTTGTAAGACGGATTTCTTTTGCGACATTAGCAAGTAGAAGTACATGGCCATCCTGGGAGGAGCATATTGCACTTAGTTATAGATTTCTATTCATTTGGCATCTTGGGTTGGGNGGTTTGGGGGGGATCAGGGGATTCGGGATTN]

[+] EMBL CA764306             [TTTGGTTCTTATATCGATCGCCGCTGATGGTGATATGATGTTTACCTTTACCATTGGTCCGTATTCGCTGAGCATCCGTTCAAGTCTCTCTCTTTCTCTGTGTTTGTTTGTTTTTTTTTTTGCCAGATCTGATTCTGTTTTCTCTTCATTTGGGCGATTTGGTTTGGTTAACGAGGGACCTGGGGATGAACTGCTTTCCTACGTGCGGTATTGTCCAAGTTTACCCCTCGGATACCCATCTGCATATGGCTCCCAAATCCTTTGCATCGCTATGTCACTAGTGTTGCAGATCGGGATCTCGTTTGCGACATCATCTAATCGAAAAGATTCGAATGTTGTTCTTTTTTGGGGTTGATCTCGCGAAGATCCCAGCAGAGAGGTGTGTGCACTCCATGGTTGAGGCCTCTCTAACAAATCTTTATCTTCGCATAGGAAGGAACAGAGGCCGTGAATTCGTGGATGTGTGATTGGTTTATGGTTCCATTACATCTGTAGCCACGGTTACATCTTTCTTGACATAGCGAGATCTCTCTCGTCTGGTGCTTATGAATGAAGTAATTGATGATTGCTCCTCCCTGCGAGAGCATCAAGCAAACGAGGGACCTATAGATGGACAGCTTTTCCCCGTGCTGNTCAGACCAAGTTTGCCCTCGGAAAGAATCATGCAATCTGGNTACCAATCTTGCAAAAACCAAACTTTTTTGTAAGACGGATTTCTTTTGCGACATTAGCAAGTAGAAGTACATGGCCATCCTGGGAGGAGCATATTGCACTTAGTTATAGATTTCTATTCATTTGGCATCTTGGGTTGGGNGGTTTGGGGGGGATCAGGGGATTCGGGATTN]


>consensus_4470#0 TTTGGTTCTTATATCGATCGCCGCTGATGGTGATATGATGTTTACCTTTACCATTGGTCC GTATTCGCTGAGCATCCGTTCAAGTCTCTCTCTTTCTCTGTGTTTGTTTGTTTTTTTTTT TGCCAGATCTGATTCTGTTTTCTCTTCATTTGGGCGATTTGGTTTGGTTAACGAGGGACC TGGGGATGAACTGCTTTCCTACGTGCGGTATTGTCCAAGTTTACCCCTCGGATACCCATC TGCATATGGCTCCCAAATCCTTTGCATCGCTATGTCACTAGTGTTGCAGATCGGGATCTC GTTTGCGACATCATCTAATCGAAAAGATTCGAATGTTGTTCTTTTTTGGGGTTGATCTCG CGAAGATCCCAGCAGAGAGGTGTGTGCACTCCATGGTTGAGGCCTCTCTAACAAATCTTT ATCTTCGCATAGGAAGGAACAGAGGCCGTGAATTCGTGGATGTGTGATTGGTTTATGGTT CCATTACATCTGTAGCCACGGTTACATCTTTCTTGACATAGCGAGATCTCTCTCGTCTGG TGCTTATGAATGAAGTAATTGATGATTGCTCCTCCCTGCGAGAGCATCAAGCAAACGAGG GACCTATAGATGGACAGCTTTTCCCCGTGCTGNTCAGACCAAGTTTGCCCTCGGAAAGAA TCATGCAATCTGGNTACCAATCTTGCAAAAACCAAACTTTTTTGTAAGACGGATTTCTTT TGCGACATTAGCAAGTAGAAGTACATGGCCATCCTGGGAGGAGCATATTGCACTTAGTTA TAGATTTCTATTCATTTGGCATCTTGGGTTGGGNGGTTTGGGGGGGATCAGGGGATTCGG GATTN



consensusID : consensus_4470#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 500
fasta sequence
                              [GGGTGCGATGAAGAGAGTTTGGTTCTTATATCGATCGCCGCTGATGGTGATATGATGTTTACCTTTACCATTGGTTCGTATTCGCTGAGCATCCGTTCAAGTCTCTCTCTTTCTCTGTGTTTGTTTGTTTTTTTTTTTGCCAGATCTGATTCTGTTTTCTCTTCATTTGGGCGATTTGGTTTGGTTAACGAGGGACCTGGGGATGAACTGCTTTCCTACGTGCGGTATTGTCCAAGTTTACCCCTCGGATACCCATCTGCATATGGCTCCCAAATCCTTTGCATCGCTATGTCACTAGTGTTGCAGATCGGGATCTCGTTTGCGACATCATCTAATCGAAAAGATTCGAATGTTGTTCTTTTTTGGGGTTGATCTCGCGANGATCCCAGCNNNNNGNTGTGTGCACTCCATGGTNNNNNNNTCTCTAACAAATCTTTATCTTNNNNNNNNANGGANNNNNNGCCGTGAANNNNNGGATGTGTGATTGGTTTATGGTNNNN]

[+] EMBL CF195753             [GGGTGCGATGAAGAGAGTTTGGTTCTTATATCGATCGCCGCTGATGGTGATATGATGTTTACCTTTACCATTGGTTCGTATTCGCTGAGCATCCGTTCAAGTCTCTCTCTTTCTCTGTGTTTGTTTGTTTTTTTTTTTGCCAGATCTGATTCTGTTTTCTCTTCATTTGGGCGATTTGGTTTGGTTAACGAGGGACCTGGGGATGAACTGCTTTCCTACGTGCGGTATTGTCCAAGTTTACCCCTCGGATACCCATCTGCATATGGCTCCCAAATCCTTTGCATCGCTATGTCACTAGTGTTGCAGATCGGGATCTCGTTTGCGACATCATCTAATCGAAAAGATTCGAATGTTGTTCTTTTTTGGGGTTGATCTCGCGANGATCCCAGCNNNNNGNTGTGTGCACTCCATGGTNNNNNNNTCTCTAACAAATCTTTATCTTNNNNNNNNANGGANNNNNNGCCGTGAANNNNNGGATGTGTGATTGGTTTATGGTNNNN]


>consensus_4470#1 GGGTGCGATGAAGAGAGTTTGGTTCTTATATCGATCGCCGCTGATGGTGATATGATGTTT ACCTTTACCATTGGTTCGTATTCGCTGAGCATCCGTTCAAGTCTCTCTCTTTCTCTGTGT TTGTTTGTTTTTTTTTTTGCCAGATCTGATTCTGTTTTCTCTTCATTTGGGCGATTTGGT TTGGTTAACGAGGGACCTGGGGATGAACTGCTTTCCTACGTGCGGTATTGTCCAAGTTTA CCCCTCGGATACCCATCTGCATATGGCTCCCAAATCCTTTGCATCGCTATGTCACTAGTG TTGCAGATCGGGATCTCGTTTGCGACATCATCTAATCGAAAAGATTCGAATGTTGTTCTT TTTTGGGGTTGATCTCGCGANGATCCCAGCNNNNNGNTGTGTGCACTCCATGGTNNNNNN NTCTCTAACAAATCTTTATCTTNNNNNNNNANGGANNNNNNGCCGTGAANNNNNGGATGT GTGATTGGTTTATGGTNNNN



consensusID : consensus_4470#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 363
fasta sequence
                              [GGGTGCGATGAAGAGAGTTTGGTTCTTATATCGATCGCCGCTGATGGTGATATGATGTTTACCTTTACCATTGGTTCGTATTCGCTGAGCATCCGTTCAAGTCTCTCTCTTTCTCTGTGTTTGTTTGTTTTTTTTTTTGCCAGATCTGATTCTGTTTTCTCTTCATTTGGGCGATTTGGTTTGGTTAACGAGGGACCTGGGGATGAACTGCTTTCCNACGTGCGNTATTGNCNNNNNNTACCCCTCNGATACNNNTCTGCATATGGCTCCCAATCCTTTGCATNGCTATGTNANNNNNGTTGNNNNTNGGGATCTNNNTTGCNNCATNNNCNNNNNNNAAAGNNNNNNNTGNNGNNCNTTTNT]

[+] EMBL CF195838             [GGGTGCGATGAAGAGAGTTTGGTTCTTATATCGATCGCCGCTGATGGTGATATGATGTTTACCTTTACCATTGGTTCGTATTCGCTGAGCATCCGTTCAAGTCTCTCTCTTTCTCTGTGTTTGTTTGTTTTTTTTTTTGCCAGATCTGATTCTGTTTTCTCTTCATTTGGGCGATTTGGTTTGGTTAACGAGGGACCTGGGGATGAACTGCTTTCCNACGTGCGNTATTGNCNNNNNNTACCCCTCNGATACNNNTCTGCATATGGCTCCCAATCCTTTGCATNGCTATGTNANNNNNGTTGNNNNTNGGGATCTNNNTTGCNNCATNNNCNNNNNNNAAAGNNNNNNNTGNNGNNCNTTTNT]


>consensus_4470#2 GGGTGCGATGAAGAGAGTTTGGTTCTTATATCGATCGCCGCTGATGGTGATATGATGTTT ACCTTTACCATTGGTTCGTATTCGCTGAGCATCCGTTCAAGTCTCTCTCTTTCTCTGTGT TTGTTTGTTTTTTTTTTTGCCAGATCTGATTCTGTTTTCTCTTCATTTGGGCGATTTGGT TTGGTTAACGAGGGACCTGGGGATGAACTGCTTTCCNACGTGCGNTATTGNCNNNNNNTA CCCCTCNGATACNNNTCTGCATATGGCTCCCAATCCTTTGCATNGCTATGTNANNNNNGT TGNNNNTNGGGATCTNNNTTGCNNCATNNNCNNNNNNNAAAGNNNNNNNTGNNGNNCNTT TNT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4470#0      -----------------TTTGGTTCTTATATCGATCGCCGCTGATGGTGATATGATGTTT 43
consensus_4470#1      GGGTGCGATGAAGAGAGTTTGGTTCTTATATCGATCGCCGCTGATGGTGATATGATGTTT 60
consensus_4470#2      GGGTGCGATGAAGAGAGTTTGGTTCTTATATCGATCGCCGCTGATGGTGATATGATGTTT 60
                                       *******************************************

consensus_4470#0      ACCTTTACCATTGGTCCGTATTCGCTGAGCATCCGTTCAAGTCTCTCTCTTTCTCTGTGT 103
consensus_4470#1      ACCTTTACCATTGGTTCGTATTCGCTGAGCATCCGTTCAAGTCTCTCTCTTTCTCTGTGT 120
consensus_4470#2      ACCTTTACCATTGGTTCGTATTCGCTGAGCATCCGTTCAAGTCTCTCTCTTTCTCTGTGT 120
                      *************** ********************************************

consensus_4470#0      TTGTTTGTTTTTTTTTTTGCCAGATCTGATTCTGTTTTCTCTTCATTTGGGCGATTTGGT 163
consensus_4470#1      TTGTTTGTTTTTTTTTTTGCCAGATCTGATTCTGTTTTCTCTTCATTTGGGCGATTTGGT 180
consensus_4470#2      TTGTTTGTTTTTTTTTTTGCCAGATCTGATTCTGTTTTCTCTTCATTTGGGCGATTTGGT 180
                      ************************************************************

consensus_4470#0      TTGGTTAACGAGGGACCTGGGGATGAACTGCTTTCCTACGTGCGGTATTGTCCAAGTTTA 223
consensus_4470#1      TTGGTTAACGAGGGACCTGGGGATGAACTGCTTTCCTACGTGCGGTATTGTCCAAGTTTA 240
consensus_4470#2      TTGGTTAACGAGGGACCTGGGGATGAACTGCTTTCCNACGTGCGNTATTGNCNNNNNNTA 240
                      ************************************ ******* ***** *      **

consensus_4470#0      CCCCTCGGATACCCATCTGCATATGGCTCCCAAATCCTTTGCATCGCTATGTCACTAGTG 283
consensus_4470#1      CCCCTCGGATACCCATCTGCATATGGCTCCCAAATCCTTTGCATCGCTATGTCACTAGTG 300
consensus_4470#2      CCCCTCNGATACNNNTCTGCATATGGCTCCCAA-TCCTTTGCATNGCTATGTNANNNNNG 299
                      ****** *****   ****************** ********** ******* *     *

consensus_4470#0      TTGCAGATCGGGATCTCGTTTGCGACATCATCTAATCGAAAAGATTCGAATGTTGTTCTT 343
consensus_4470#1      TTGCAGATCGGGATCTCGTTTGCGACATCATCTAATCGAAAAGATTCGAATGTTGTTCTT 360
consensus_4470#2      TTGNNNNTNGGGATCTNNNTTGCNNCATNNNCNNNNNNNAAAGNNNNNNNTGNNGNNCNT 359
                      ***    * *******   ****  ***   *       ****       **  *  * *

consensus_4470#0      TTTTGGGGTTGATCTCGCGAAGATCCCAGCAGAGAGGTGTGTGCACTCCATGGTTGAGGC 403
consensus_4470#1      TTTTGGGGTTGATCTCGCGANGATCCCAGCNNNNNGNTGTGTGCACTCCATGGTNNNNNN 420
consensus_4470#2      TTNT-------------------------------------------------------- 363
                      ** *                                                        

consensus_4470#0      CTCTCTAACAAATCTTTATCTTCGCATAGGAAGGAACAGAGGCCGTGAATTCGTGGATGT 463
consensus_4470#1      NTCTCTAACAAATCTTTATCTTNNNNNNNNANGGANNNNNNGCCGTGAANNNNNGGATGT 480
consensus_4470#2      ------------------------------------------------------------
                                                                                  

consensus_4470#0      GTGATTGGTTTATGGTTCCATTACATCTGTAGCCACGGTTACATCTTTCTTGACATAGCG 523
consensus_4470#1      GTGATTGGTTTATGGTNNNN---------------------------------------- 500
consensus_4470#2      ------------------------------------------------------------
                                                                                  

consensus_4470#0      AGATCTCTCTCGTCTGGTGCTTATGAATGAAGTAATTGATGATTGCTCCTCCCTGCGAGA 583
consensus_4470#1      ------------------------------------------------------------
consensus_4470#2      ------------------------------------------------------------
                                                                                  

consensus_4470#0      GCATCAAGCAAACGAGGGACCTATAGATGGACAGCTTTTCCCCGTGCTGNTCAGACCAAG 643
consensus_4470#1      ------------------------------------------------------------
consensus_4470#2      ------------------------------------------------------------
                                                                                  

consensus_4470#0      TTTGCCCTCGGAAAGAATCATGCAATCTGGNTACCAATCTTGCAAAAACCAAACTTTTTT 703
consensus_4470#1      ------------------------------------------------------------
consensus_4470#2      ------------------------------------------------------------
                                                                                  

consensus_4470#0      GTAAGACGGATTTCTTTTGCGACATTAGCAAGTAGAAGTACATGGCCATCCTGGGAGGAG 763
consensus_4470#1      ------------------------------------------------------------
consensus_4470#2      ------------------------------------------------------------
                                                                                  

consensus_4470#0      CATATTGCACTTAGTTATAGATTTCTATTCATTTGGCATCTTGGGTTGGGNGGTTTGGGG 823
consensus_4470#1      ------------------------------------------------------------
consensus_4470#2      ------------------------------------------------------------
                                                                                  

consensus_4470#0      GGGATCAGGGGATTCGGGATTN 845
consensus_4470#1      ----------------------
consensus_4470#2      ----------------------
                                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)