These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4470#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 845 fasta sequence [TTTGGTTCTTATATCGATCGCCGCTGATGGTGATATGATGTTTACCTTTACCATTGGTCCGTATTCGCTGAGCATCCGTTCAAGTCTCTCTCTTTCTCTGTGTTTGTTTGTTTTTTTTTTTGCCAGATCTGATTCTGTTTTCTCTTCATTTGGGCGATTTGGTTTGGTTAACGAGGGACCTGGGGATGAACTGCTTTCCTACGTGCGGTATTGTCCAAGTTTACCCCTCGGATACCCATCTGCATATGGCTCCCAAATCCTTTGCATCGCTATGTCACTAGTGTTGCAGATCGGGATCTCGTTTGCGACATCATCTAATCGAAAAGATTCGAATGTTGTTCTTTTTTGGGGTTGATCTCGCGAAGATCCCAGCAGAGAGGTGTGTGCACTCCATGGTTGAGGCCTCTCTAACAAATCTTTATCTTCGCATAGGAAGGAACAGAGGCCGTGAATTCGTGGATGTGTGATTGGTTTATGGTTCCATTACATCTGTAGCCACGGTTACATCTTTCTTGACATAGCGAGATCTCTCTCGTCTGGTGCTTATGAATGAAGTAATTGATGATTGCTCCTCCCTGCGAGAGCATCAAGCAAACGAGGGACCTATAGATGGACAGCTTTTCCCCGTGCTGNTCAGACCAAGTTTGCCCTCGGAAAGAATCATGCAATCTGGNTACCAATCTTGCAAAAACCAAACTTTTTTGTAAGACGGATTTCTTTTGCGACATTAGCAAGTAGAAGTACATGGCCATCCTGGGAGGAGCATATTGCACTTAGTTATAGATTTCTATTCATTTGGCATCTTGGGTTGGGNGGTTTGGGGGGGATCAGGGGATTCGGGATTN] [+] EMBL CA764306 [TTTGGTTCTTATATCGATCGCCGCTGATGGTGATATGATGTTTACCTTTACCATTGGTCCGTATTCGCTGAGCATCCGTTCAAGTCTCTCTCTTTCTCTGTGTTTGTTTGTTTTTTTTTTTGCCAGATCTGATTCTGTTTTCTCTTCATTTGGGCGATTTGGTTTGGTTAACGAGGGACCTGGGGATGAACTGCTTTCCTACGTGCGGTATTGTCCAAGTTTACCCCTCGGATACCCATCTGCATATGGCTCCCAAATCCTTTGCATCGCTATGTCACTAGTGTTGCAGATCGGGATCTCGTTTGCGACATCATCTAATCGAAAAGATTCGAATGTTGTTCTTTTTTGGGGTTGATCTCGCGAAGATCCCAGCAGAGAGGTGTGTGCACTCCATGGTTGAGGCCTCTCTAACAAATCTTTATCTTCGCATAGGAAGGAACAGAGGCCGTGAATTCGTGGATGTGTGATTGGTTTATGGTTCCATTACATCTGTAGCCACGGTTACATCTTTCTTGACATAGCGAGATCTCTCTCGTCTGGTGCTTATGAATGAAGTAATTGATGATTGCTCCTCCCTGCGAGAGCATCAAGCAAACGAGGGACCTATAGATGGACAGCTTTTCCCCGTGCTGNTCAGACCAAGTTTGCCCTCGGAAAGAATCATGCAATCTGGNTACCAATCTTGCAAAAACCAAACTTTTTTGTAAGACGGATTTCTTTTGCGACATTAGCAAGTAGAAGTACATGGCCATCCTGGGAGGAGCATATTGCACTTAGTTATAGATTTCTATTCATTTGGCATCTTGGGTTGGGNGGTTTGGGGGGGATCAGGGGATTCGGGATTN] consensusID : consensus_4470#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 500 fasta sequence [GGGTGCGATGAAGAGAGTTTGGTTCTTATATCGATCGCCGCTGATGGTGATATGATGTTTACCTTTACCATTGGTTCGTATTCGCTGAGCATCCGTTCAAGTCTCTCTCTTTCTCTGTGTTTGTTTGTTTTTTTTTTTGCCAGATCTGATTCTGTTTTCTCTTCATTTGGGCGATTTGGTTTGGTTAACGAGGGACCTGGGGATGAACTGCTTTCCTACGTGCGGTATTGTCCAAGTTTACCCCTCGGATACCCATCTGCATATGGCTCCCAAATCCTTTGCATCGCTATGTCACTAGTGTTGCAGATCGGGATCTCGTTTGCGACATCATCTAATCGAAAAGATTCGAATGTTGTTCTTTTTTGGGGTTGATCTCGCGANGATCCCAGCNNNNNGNTGTGTGCACTCCATGGTNNNNNNNTCTCTAACAAATCTTTATCTTNNNNNNNNANGGANNNNNNGCCGTGAANNNNNGGATGTGTGATTGGTTTATGGTNNNN] [+] EMBL CF195753 [GGGTGCGATGAAGAGAGTTTGGTTCTTATATCGATCGCCGCTGATGGTGATATGATGTTTACCTTTACCATTGGTTCGTATTCGCTGAGCATCCGTTCAAGTCTCTCTCTTTCTCTGTGTTTGTTTGTTTTTTTTTTTGCCAGATCTGATTCTGTTTTCTCTTCATTTGGGCGATTTGGTTTGGTTAACGAGGGACCTGGGGATGAACTGCTTTCCTACGTGCGGTATTGTCCAAGTTTACCCCTCGGATACCCATCTGCATATGGCTCCCAAATCCTTTGCATCGCTATGTCACTAGTGTTGCAGATCGGGATCTCGTTTGCGACATCATCTAATCGAAAAGATTCGAATGTTGTTCTTTTTTGGGGTTGATCTCGCGANGATCCCAGCNNNNNGNTGTGTGCACTCCATGGTNNNNNNNTCTCTAACAAATCTTTATCTTNNNNNNNNANGGANNNNNNGCCGTGAANNNNNGGATGTGTGATTGGTTTATGGTNNNN] consensusID : consensus_4470#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 363 fasta sequence [GGGTGCGATGAAGAGAGTTTGGTTCTTATATCGATCGCCGCTGATGGTGATATGATGTTTACCTTTACCATTGGTTCGTATTCGCTGAGCATCCGTTCAAGTCTCTCTCTTTCTCTGTGTTTGTTTGTTTTTTTTTTTGCCAGATCTGATTCTGTTTTCTCTTCATTTGGGCGATTTGGTTTGGTTAACGAGGGACCTGGGGATGAACTGCTTTCCNACGTGCGNTATTGNCNNNNNNTACCCCTCNGATACNNNTCTGCATATGGCTCCCAATCCTTTGCATNGCTATGTNANNNNNGTTGNNNNTNGGGATCTNNNTTGCNNCATNNNCNNNNNNNAAAGNNNNNNNTGNNGNNCNTTTNT] [+] EMBL CF195838 [GGGTGCGATGAAGAGAGTTTGGTTCTTATATCGATCGCCGCTGATGGTGATATGATGTTTACCTTTACCATTGGTTCGTATTCGCTGAGCATCCGTTCAAGTCTCTCTCTTTCTCTGTGTTTGTTTGTTTTTTTTTTTGCCAGATCTGATTCTGTTTTCTCTTCATTTGGGCGATTTGGTTTGGTTAACGAGGGACCTGGGGATGAACTGCTTTCCNACGTGCGNTATTGNCNNNNNNTACCCCTCNGATACNNNTCTGCATATGGCTCCCAATCCTTTGCATNGCTATGTNANNNNNGTTGNNNNTNGGGATCTNNNTTGCNNCATNNNCNNNNNNNAAAGNNNNNNNTGNNGNNCNTTTNT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4470#0 -----------------TTTGGTTCTTATATCGATCGCCGCTGATGGTGATATGATGTTT 43 consensus_4470#1 GGGTGCGATGAAGAGAGTTTGGTTCTTATATCGATCGCCGCTGATGGTGATATGATGTTT 60 consensus_4470#2 GGGTGCGATGAAGAGAGTTTGGTTCTTATATCGATCGCCGCTGATGGTGATATGATGTTT 60 ******************************************* consensus_4470#0 ACCTTTACCATTGGTCCGTATTCGCTGAGCATCCGTTCAAGTCTCTCTCTTTCTCTGTGT 103 consensus_4470#1 ACCTTTACCATTGGTTCGTATTCGCTGAGCATCCGTTCAAGTCTCTCTCTTTCTCTGTGT 120 consensus_4470#2 ACCTTTACCATTGGTTCGTATTCGCTGAGCATCCGTTCAAGTCTCTCTCTTTCTCTGTGT 120 *************** ******************************************** consensus_4470#0 TTGTTTGTTTTTTTTTTTGCCAGATCTGATTCTGTTTTCTCTTCATTTGGGCGATTTGGT 163 consensus_4470#1 TTGTTTGTTTTTTTTTTTGCCAGATCTGATTCTGTTTTCTCTTCATTTGGGCGATTTGGT 180 consensus_4470#2 TTGTTTGTTTTTTTTTTTGCCAGATCTGATTCTGTTTTCTCTTCATTTGGGCGATTTGGT 180 ************************************************************ consensus_4470#0 TTGGTTAACGAGGGACCTGGGGATGAACTGCTTTCCTACGTGCGGTATTGTCCAAGTTTA 223 consensus_4470#1 TTGGTTAACGAGGGACCTGGGGATGAACTGCTTTCCTACGTGCGGTATTGTCCAAGTTTA 240 consensus_4470#2 TTGGTTAACGAGGGACCTGGGGATGAACTGCTTTCCNACGTGCGNTATTGNCNNNNNNTA 240 ************************************ ******* ***** * ** consensus_4470#0 CCCCTCGGATACCCATCTGCATATGGCTCCCAAATCCTTTGCATCGCTATGTCACTAGTG 283 consensus_4470#1 CCCCTCGGATACCCATCTGCATATGGCTCCCAAATCCTTTGCATCGCTATGTCACTAGTG 300 consensus_4470#2 CCCCTCNGATACNNNTCTGCATATGGCTCCCAA-TCCTTTGCATNGCTATGTNANNNNNG 299 ****** ***** ****************** ********** ******* * * consensus_4470#0 TTGCAGATCGGGATCTCGTTTGCGACATCATCTAATCGAAAAGATTCGAATGTTGTTCTT 343 consensus_4470#1 TTGCAGATCGGGATCTCGTTTGCGACATCATCTAATCGAAAAGATTCGAATGTTGTTCTT 360 consensus_4470#2 TTGNNNNTNGGGATCTNNNTTGCNNCATNNNCNNNNNNNAAAGNNNNNNNTGNNGNNCNT 359 *** * ******* **** *** * **** ** * * * consensus_4470#0 TTTTGGGGTTGATCTCGCGAAGATCCCAGCAGAGAGGTGTGTGCACTCCATGGTTGAGGC 403 consensus_4470#1 TTTTGGGGTTGATCTCGCGANGATCCCAGCNNNNNGNTGTGTGCACTCCATGGTNNNNNN 420 consensus_4470#2 TTNT-------------------------------------------------------- 363 ** * consensus_4470#0 CTCTCTAACAAATCTTTATCTTCGCATAGGAAGGAACAGAGGCCGTGAATTCGTGGATGT 463 consensus_4470#1 NTCTCTAACAAATCTTTATCTTNNNNNNNNANGGANNNNNNGCCGTGAANNNNNGGATGT 480 consensus_4470#2 ------------------------------------------------------------ consensus_4470#0 GTGATTGGTTTATGGTTCCATTACATCTGTAGCCACGGTTACATCTTTCTTGACATAGCG 523 consensus_4470#1 GTGATTGGTTTATGGTNNNN---------------------------------------- 500 consensus_4470#2 ------------------------------------------------------------ consensus_4470#0 AGATCTCTCTCGTCTGGTGCTTATGAATGAAGTAATTGATGATTGCTCCTCCCTGCGAGA 583 consensus_4470#1 ------------------------------------------------------------ consensus_4470#2 ------------------------------------------------------------ consensus_4470#0 GCATCAAGCAAACGAGGGACCTATAGATGGACAGCTTTTCCCCGTGCTGNTCAGACCAAG 643 consensus_4470#1 ------------------------------------------------------------ consensus_4470#2 ------------------------------------------------------------ consensus_4470#0 TTTGCCCTCGGAAAGAATCATGCAATCTGGNTACCAATCTTGCAAAAACCAAACTTTTTT 703 consensus_4470#1 ------------------------------------------------------------ consensus_4470#2 ------------------------------------------------------------ consensus_4470#0 GTAAGACGGATTTCTTTTGCGACATTAGCAAGTAGAAGTACATGGCCATCCTGGGAGGAG 763 consensus_4470#1 ------------------------------------------------------------ consensus_4470#2 ------------------------------------------------------------ consensus_4470#0 CATATTGCACTTAGTTATAGATTTCTATTCATTTGGCATCTTGGGTTGGGNGGTTTGGGG 823 consensus_4470#1 ------------------------------------------------------------ consensus_4470#2 ------------------------------------------------------------ consensus_4470#0 GGGATCAGGGGATTCGGGATTN 845 consensus_4470#1 ---------------------- consensus_4470#2 ---------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||