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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4470#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 845 fasta sequence
[TTTGGTTCTTATATCGATCGCCGCTGATGGTGATATGATGTTTACCTTTACCATTGGTCCGTATTCGCTGAGCATCCGTTCAAGTCTCTCTCTTTCTCTGTGTTTGTTTGTTTTTTTTTTTGCCAGATCTGATTCTGTTTTCTCTTCATTTGGGCGATTTGGTTTGGTTAACGAGGGACCTGGGGATGAACTGCTTTCCTACGTGCGGTATTGTCCAAGTTTACCCCTCGGATACCCATCTGCATATGGCTCCCAAATCCTTTGCATCGCTATGTCACTAGTGTTGCAGATCGGGATCTCGTTTGCGACATCATCTAATCGAAAAGATTCGAATGTTGTTCTTTTTTGGGGTTGATCTCGCGAAGATCCCAGCAGAGAGGTGTGTGCACTCCATGGTTGAGGCCTCTCTAACAAATCTTTATCTTCGCATAGGAAGGAACAGAGGCCGTGAATTCGTGGATGTGTGATTGGTTTATGGTTCCATTACATCTGTAGCCACGGTTACATCTTTCTTGACATAGCGAGATCTCTCTCGTCTGGTGCTTATGAATGAAGTAATTGATGATTGCTCCTCCCTGCGAGAGCATCAAGCAAACGAGGGACCTATAGATGGACAGCTTTTCCCCGTGCTGNTCAGACCAAGTTTGCCCTCGGAAAGAATCATGCAATCTGGNTACCAATCTTGCAAAAACCAAACTTTTTTGTAAGACGGATTTCTTTTGCGACATTAGCAAGTAGAAGTACATGGCCATCCTGGGAGGAGCATATTGCACTTAGTTATAGATTTCTATTCATTTGGCATCTTGGGTTGGGNGGTTTGGGGGGGATCAGGGGATTCGGGATTN]
[+] EMBL CA764306 [TTTGGTTCTTATATCGATCGCCGCTGATGGTGATATGATGTTTACCTTTACCATTGGTCCGTATTCGCTGAGCATCCGTTCAAGTCTCTCTCTTTCTCTGTGTTTGTTTGTTTTTTTTTTTGCCAGATCTGATTCTGTTTTCTCTTCATTTGGGCGATTTGGTTTGGTTAACGAGGGACCTGGGGATGAACTGCTTTCCTACGTGCGGTATTGTCCAAGTTTACCCCTCGGATACCCATCTGCATATGGCTCCCAAATCCTTTGCATCGCTATGTCACTAGTGTTGCAGATCGGGATCTCGTTTGCGACATCATCTAATCGAAAAGATTCGAATGTTGTTCTTTTTTGGGGTTGATCTCGCGAAGATCCCAGCAGAGAGGTGTGTGCACTCCATGGTTGAGGCCTCTCTAACAAATCTTTATCTTCGCATAGGAAGGAACAGAGGCCGTGAATTCGTGGATGTGTGATTGGTTTATGGTTCCATTACATCTGTAGCCACGGTTACATCTTTCTTGACATAGCGAGATCTCTCTCGTCTGGTGCTTATGAATGAAGTAATTGATGATTGCTCCTCCCTGCGAGAGCATCAAGCAAACGAGGGACCTATAGATGGACAGCTTTTCCCCGTGCTGNTCAGACCAAGTTTGCCCTCGGAAAGAATCATGCAATCTGGNTACCAATCTTGCAAAAACCAAACTTTTTTGTAAGACGGATTTCTTTTGCGACATTAGCAAGTAGAAGTACATGGCCATCCTGGGAGGAGCATATTGCACTTAGTTATAGATTTCTATTCATTTGGCATCTTGGGTTGGGNGGTTTGGGGGGGATCAGGGGATTCGGGATTN]
consensusID : consensus_4470#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 500 fasta sequence
[GGGTGCGATGAAGAGAGTTTGGTTCTTATATCGATCGCCGCTGATGGTGATATGATGTTTACCTTTACCATTGGTTCGTATTCGCTGAGCATCCGTTCAAGTCTCTCTCTTTCTCTGTGTTTGTTTGTTTTTTTTTTTGCCAGATCTGATTCTGTTTTCTCTTCATTTGGGCGATTTGGTTTGGTTAACGAGGGACCTGGGGATGAACTGCTTTCCTACGTGCGGTATTGTCCAAGTTTACCCCTCGGATACCCATCTGCATATGGCTCCCAAATCCTTTGCATCGCTATGTCACTAGTGTTGCAGATCGGGATCTCGTTTGCGACATCATCTAATCGAAAAGATTCGAATGTTGTTCTTTTTTGGGGTTGATCTCGCGANGATCCCAGCNNNNNGNTGTGTGCACTCCATGGTNNNNNNNTCTCTAACAAATCTTTATCTTNNNNNNNNANGGANNNNNNGCCGTGAANNNNNGGATGTGTGATTGGTTTATGGTNNNN]
[+] EMBL CF195753 [GGGTGCGATGAAGAGAGTTTGGTTCTTATATCGATCGCCGCTGATGGTGATATGATGTTTACCTTTACCATTGGTTCGTATTCGCTGAGCATCCGTTCAAGTCTCTCTCTTTCTCTGTGTTTGTTTGTTTTTTTTTTTGCCAGATCTGATTCTGTTTTCTCTTCATTTGGGCGATTTGGTTTGGTTAACGAGGGACCTGGGGATGAACTGCTTTCCTACGTGCGGTATTGTCCAAGTTTACCCCTCGGATACCCATCTGCATATGGCTCCCAAATCCTTTGCATCGCTATGTCACTAGTGTTGCAGATCGGGATCTCGTTTGCGACATCATCTAATCGAAAAGATTCGAATGTTGTTCTTTTTTGGGGTTGATCTCGCGANGATCCCAGCNNNNNGNTGTGTGCACTCCATGGTNNNNNNNTCTCTAACAAATCTTTATCTTNNNNNNNNANGGANNNNNNGCCGTGAANNNNNGGATGTGTGATTGGTTTATGGTNNNN]
consensusID : consensus_4470#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 363 fasta sequence
[GGGTGCGATGAAGAGAGTTTGGTTCTTATATCGATCGCCGCTGATGGTGATATGATGTTTACCTTTACCATTGGTTCGTATTCGCTGAGCATCCGTTCAAGTCTCTCTCTTTCTCTGTGTTTGTTTGTTTTTTTTTTTGCCAGATCTGATTCTGTTTTCTCTTCATTTGGGCGATTTGGTTTGGTTAACGAGGGACCTGGGGATGAACTGCTTTCCNACGTGCGNTATTGNCNNNNNNTACCCCTCNGATACNNNTCTGCATATGGCTCCCAATCCTTTGCATNGCTATGTNANNNNNGTTGNNNNTNGGGATCTNNNTTGCNNCATNNNCNNNNNNNAAAGNNNNNNNTGNNGNNCNTTTNT]
[+] EMBL CF195838 [GGGTGCGATGAAGAGAGTTTGGTTCTTATATCGATCGCCGCTGATGGTGATATGATGTTTACCTTTACCATTGGTTCGTATTCGCTGAGCATCCGTTCAAGTCTCTCTCTTTCTCTGTGTTTGTTTGTTTTTTTTTTTGCCAGATCTGATTCTGTTTTCTCTTCATTTGGGCGATTTGGTTTGGTTAACGAGGGACCTGGGGATGAACTGCTTTCCNACGTGCGNTATTGNCNNNNNNTACCCCTCNGATACNNNTCTGCATATGGCTCCCAATCCTTTGCATNGCTATGTNANNNNNGTTGNNNNTNGGGATCTNNNTTGCNNCATNNNCNNNNNNNAAAGNNNNNNNTGNNGNNCNTTTNT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4470#0 -----------------TTTGGTTCTTATATCGATCGCCGCTGATGGTGATATGATGTTT 43
consensus_4470#1 GGGTGCGATGAAGAGAGTTTGGTTCTTATATCGATCGCCGCTGATGGTGATATGATGTTT 60
consensus_4470#2 GGGTGCGATGAAGAGAGTTTGGTTCTTATATCGATCGCCGCTGATGGTGATATGATGTTT 60
*******************************************
consensus_4470#0 ACCTTTACCATTGGTCCGTATTCGCTGAGCATCCGTTCAAGTCTCTCTCTTTCTCTGTGT 103
consensus_4470#1 ACCTTTACCATTGGTTCGTATTCGCTGAGCATCCGTTCAAGTCTCTCTCTTTCTCTGTGT 120
consensus_4470#2 ACCTTTACCATTGGTTCGTATTCGCTGAGCATCCGTTCAAGTCTCTCTCTTTCTCTGTGT 120
*************** ********************************************
consensus_4470#0 TTGTTTGTTTTTTTTTTTGCCAGATCTGATTCTGTTTTCTCTTCATTTGGGCGATTTGGT 163
consensus_4470#1 TTGTTTGTTTTTTTTTTTGCCAGATCTGATTCTGTTTTCTCTTCATTTGGGCGATTTGGT 180
consensus_4470#2 TTGTTTGTTTTTTTTTTTGCCAGATCTGATTCTGTTTTCTCTTCATTTGGGCGATTTGGT 180
************************************************************
consensus_4470#0 TTGGTTAACGAGGGACCTGGGGATGAACTGCTTTCCTACGTGCGGTATTGTCCAAGTTTA 223
consensus_4470#1 TTGGTTAACGAGGGACCTGGGGATGAACTGCTTTCCTACGTGCGGTATTGTCCAAGTTTA 240
consensus_4470#2 TTGGTTAACGAGGGACCTGGGGATGAACTGCTTTCCNACGTGCGNTATTGNCNNNNNNTA 240
************************************ ******* ***** * **
consensus_4470#0 CCCCTCGGATACCCATCTGCATATGGCTCCCAAATCCTTTGCATCGCTATGTCACTAGTG 283
consensus_4470#1 CCCCTCGGATACCCATCTGCATATGGCTCCCAAATCCTTTGCATCGCTATGTCACTAGTG 300
consensus_4470#2 CCCCTCNGATACNNNTCTGCATATGGCTCCCAA-TCCTTTGCATNGCTATGTNANNNNNG 299
****** ***** ****************** ********** ******* * *
consensus_4470#0 TTGCAGATCGGGATCTCGTTTGCGACATCATCTAATCGAAAAGATTCGAATGTTGTTCTT 343
consensus_4470#1 TTGCAGATCGGGATCTCGTTTGCGACATCATCTAATCGAAAAGATTCGAATGTTGTTCTT 360
consensus_4470#2 TTGNNNNTNGGGATCTNNNTTGCNNCATNNNCNNNNNNNAAAGNNNNNNNTGNNGNNCNT 359
*** * ******* **** *** * **** ** * * *
consensus_4470#0 TTTTGGGGTTGATCTCGCGAAGATCCCAGCAGAGAGGTGTGTGCACTCCATGGTTGAGGC 403
consensus_4470#1 TTTTGGGGTTGATCTCGCGANGATCCCAGCNNNNNGNTGTGTGCACTCCATGGTNNNNNN 420
consensus_4470#2 TTNT-------------------------------------------------------- 363
** *
consensus_4470#0 CTCTCTAACAAATCTTTATCTTCGCATAGGAAGGAACAGAGGCCGTGAATTCGTGGATGT 463
consensus_4470#1 NTCTCTAACAAATCTTTATCTTNNNNNNNNANGGANNNNNNGCCGTGAANNNNNGGATGT 480
consensus_4470#2 ------------------------------------------------------------
consensus_4470#0 GTGATTGGTTTATGGTTCCATTACATCTGTAGCCACGGTTACATCTTTCTTGACATAGCG 523
consensus_4470#1 GTGATTGGTTTATGGTNNNN---------------------------------------- 500
consensus_4470#2 ------------------------------------------------------------
consensus_4470#0 AGATCTCTCTCGTCTGGTGCTTATGAATGAAGTAATTGATGATTGCTCCTCCCTGCGAGA 583
consensus_4470#1 ------------------------------------------------------------
consensus_4470#2 ------------------------------------------------------------
consensus_4470#0 GCATCAAGCAAACGAGGGACCTATAGATGGACAGCTTTTCCCCGTGCTGNTCAGACCAAG 643
consensus_4470#1 ------------------------------------------------------------
consensus_4470#2 ------------------------------------------------------------
consensus_4470#0 TTTGCCCTCGGAAAGAATCATGCAATCTGGNTACCAATCTTGCAAAAACCAAACTTTTTT 703
consensus_4470#1 ------------------------------------------------------------
consensus_4470#2 ------------------------------------------------------------
consensus_4470#0 GTAAGACGGATTTCTTTTGCGACATTAGCAAGTAGAAGTACATGGCCATCCTGGGAGGAG 763
consensus_4470#1 ------------------------------------------------------------
consensus_4470#2 ------------------------------------------------------------
consensus_4470#0 CATATTGCACTTAGTTATAGATTTCTATTCATTTGGCATCTTGGGTTGGGNGGTTTGGGG 823
consensus_4470#1 ------------------------------------------------------------
consensus_4470#2 ------------------------------------------------------------
consensus_4470#0 GGGATCAGGGGATTCGGGATTN 845
consensus_4470#1 ----------------------
consensus_4470#2 ----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||