These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4471#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1186 fasta sequence [CACCGCGTCGAACACACTGACACCAGAGAACCCTAGCCTCGCCGGTCGCCGCCATGGCCGCCTCGCTCCTCCGCTCCGGCCACCGCCTCCGCCTCCTCCGCCACGGCAGCCTCTCCTGGGCCTCCTTCTCCGCCGCCGCCGCGGAGGAGCTCATCGACGTCCGCAAGCTCCCCACTGACTACGACGCCTCCACCTTCGACCCCACCGCCCCGTCCCGCCCACCGCCCTCCGACCGCGTCTGGCGCCTCGTCGAGGACGTCTCCTCCCTCACCCTCGCCGAGTCCGCCGCTCTCTCCGCCCTCCTCCTCCGCCGCCTCGACGTCCCCGCTCCCCCCATCGCCATCCTCAACTCCGCCGCGGGCCTCGGCGGCGGCGGCGGCGCGGGTGCCGCGGGCGCCGCCGGGGAGAAGGCCGGTGGGGCGGCGGCGGCTGAGAAGACGGTGTTCGAGCTGCGCTTGGAGGCGTTCGATGCGGCGAGCAAGATCAAGGTGATCAAGGAGATCCGGTCATTCACCGACCTGGGTCTGAAGGAGGCGAAGGAGCTAGTGGAGAAGGCACCCGCTGTGATCAAGGGTGGTGTCTCGAAGGAGGAGGCTCGGACAATCATCGATAAGATGAAGGCTGTTGGTGCCAAGGTCGTCATGGACTGATCAGCATCCTCATTTCAATTTTCAAGGTTCTGTTCACAGTTTTTAACTGTGCTTTCTCATGGTTTGATGGTTGATGCGGATTGGGGTGCCAGTGTTAATATCCTGTCAATTGGCATTTTGAAAGCCCAATGATCTTACAACACACTGGCCAATCCGATGGTGCCATCATGTGTTTCTTGTTCGGTCGATGAATTTTCTGTCACTAACAAGAAACATGGAATAATTTCTGTTGAAAAATGAGATCAACAGGGTGCAGAGCTGGAGTGTGACCTTGAGCCTGGAGTACTATCTTTTTTGGTTGGCTTCACCGGCTGTATATGTATCTCATTTTTGTAATGTTACTGAAGCTACTGAGCTAGATGCACGCTGTGGCGTTCAAGTTTTTATCCTCTGCATTTGTGAAATGACCTCACATGACGGTATGATATGGGTCATATGGACATAGATAATCCATTTATGTGTTTCTTTTTTGAAACTACAATATAGTGAACTGATGAATGTTGTGGACTATATTTTCAAGTATGGAATTCAGGAAC] [+] EMBL AK073023 [CACCGCGTCGAACACACTGACACCAGAGAACCCTAGCCTCGCCGGTCGCCGCCATGGCCGCCTCGCTCCTCCGCTCCGGCCACCGCCTCCGCCTCCTCCGCCACGGCAGCCTCTCCTGGGCCTCCTTCTCCGCCGCCGCCGCGGAGGAGCTCATCGACGTCCGCAAGCTCCCCACTGACTACGACGCCTCCACCTTCGACCCCACCGCCCCGTCCCGCCCACCGCCCTCCGACCGCGTCTGGCGCCTCGTCGAGGACGTCTCCTCCCTCACCCTCGCCGAGTCCGCCGCTCTCTCCGCCCTCCTCCTCCGCCGCCTCGACGTCCCCGCTCCCCCCATCGCCATCCTCAACTCCGCCGCGGGCCTCGGCGGCGGCGGCGGCGCGGGTGCCGCGGGCGCCGCCGGGGAGAAGGCCGGTGGGGCGGCGGCGGCTGAGAAGACGGTGTTCGAGCTGCGCTTGGAGGCGTTCGATGCGGCGAGCAAGATCAAGGTGATCAAGGAGATCCGGTCATTCACCGACCTGGGTCTGAAGGAGGCGAAGGAGCTAGTGGAGAAGGCACCCGCTGTGATCAAGGGTGGTGTCTCGAAGGAGGAGGCTCGGACAATCATCGATAAGATGAAGGCTGTTGGTGCCAAGGTCGTCATGGACTGATCAGCATCCTCATTTCAATTTTCAAGGTTCTGTTCACAGTTTTTAACTGTGCTTTCTCATGGTTTGATGGTTGATGCGGATTGGGGTGCCAGTGTTAATATCCTGTCAATTGGCATTTTGAAAGCCCAATGATCTTACAACACACTGGCCAATCCGATGGTGCCATCATGTGTTTCTTGTTCGGTCGATGAATTTTCTGTCACTAACAAGAAACATGGAATAATTTCTGTTGAAAAATGAGATCAACAGGGTGCAGAGCTGGAGTGTGACCTTGAGCCTGGAGTACTATCTTTTTTGGTTGGCTTCACCGGCTGTATATGTATCTCATTTTTGTAATGTTACTGAAGCTACTGAGCTAGATGCACGCTGTGGCGTTCAAGTTTTTATCCTCTGCATTTGTGAAATGACCTCACATGACGGTATGATATGGGTCATATGGACATAGATAATCCATTTATGTGTTTCTTTTTTGAAACTACAATATAGTGAACTGATGAATGTTGTGGACTATATTTTCAAGTATGGAATTCAGGAAC] [+] EMBL AK101756 [ ACCAGAGAACCCTAGCCTCGCCGGTCGCCGCCATGGCCGCCTCGCTCCTCCGCTCCGGCCACCGCCTCCGCCTCCTCCGCCACGGCAGCCTCTCCTGGGCCTCCTTCTCCGCCGCCGCCGCGGAGGAGCTCATCGACGTCCGCAAGCTCCCCACTGACTACGACGCCTCCACCTTCGACCCCACCGCCCCGTCCCGCCCACCGCCCTCCGACCGCGTCTGGCGCCTCGTCGAGGACGTCTCCTCCCTCACCCTCGCCGAGTCCGCCGCTCTCTCCGCCCTCCTCCTCCGCCGCCTCGACGTCCCCGCTCCCCCCATCGCCATCCTCAACTCCGCCGCGGGCCTCGGCGGCGGCGGCGGCGCGGGTGCCGCGGGCGCCGCCGGGGAGAAGGCCGGTGGGGCGGCGGCGGCTGAGAAGACGGTGTTCGAGCTGCGCTTGGAGGCGTTCGATGCGGCGAGCAAGATCAAGGTGATCAAGGAGATCCGGTCATTCACCGACCTGGGTCTGAAGGAGGCGAAGGAGCTAGTGGAGAAGGCACCCGCTGTGATCAAGGGTGGTGTCTCGAAGGAGGAGGCTCGGACAATCATCGATAAGATGAAGGCTGTTGGTGCCAAGGTCGTCATGGACTGATCAGCATCCTCATTTCAATTTTCAAGGTTCTGTTCACAGTTTTTAACTGTGCTTTCTCATGGTTTGATGGTTGATGCGGATTGGGGTGCCAGTGTTAATATCCTGTCAATTGGCATTTTGAAAGCCCAATGATCTTACAACACACTGGCCAATCCGATGGTGCCATCATGTGTTTCTTGTTCGGTCGATGAATTCTCTGTCACTAACAAGAAACATGGAATA ] consensusID : consensus_4471#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 654 fasta sequence [CCGGCTGAGAAGACGGTGTTCGAGCTGCGCTTGGAGGCTTTCGATGCGGCGAGCAAGATCAAGGTGATCAAGGAGATCCGGTCATTCACCGACCTGGGTCTGAAGGAGGCGAAGGAGCTAGTGGAGAAGGCACCCGCTGTGATCAAGGGTGGTGTCTCGAAGGAGGAGGCTCGGACAATCATCGATAAGATGAAGGCTGTTGGTGCCAAGGTCGTCATGGACTGATCAGCATCCTCATTTCAATTTTCAAGGTTCTGTTCACAGTTTTTAACTGTGCTTTCTCATGGTTTGATGGTTGATGCGGATTGGGGTGCCAGTGTTAATATCCTGTCAATTGGCATTTTGAAAGCCCAATGATCTTACAACACACTGGCCAATCCGATGGTGCCATCATGTGTTTCTTGTNCGGTCGATGAATTCTCTGTCACTAACAAGAAACATGGAATAATNTCTGTNGANAAATGAGATCAACAGGGTGCAGAGCTGGAGTGTGACATTGAGCCTGGAGTACTATCTNTTTTGGTTGGCTTCACCGGCTGTATATTATCTCATNTTTGTANTGTACTGAAGCTCTGAGCTAGATCACGCTGTGGCGTTTCAGTTTTATTCTCGCAAAAAAAAAAAAAAAAAAAAAACCTCAGGGGGCCAGTCCCA] [+] EMBL CA753050 [CCGGCTGAGAAGACGGTGTTCGAGCTGCGCTTGGAGGCTTTCGATGCGGCGAGCAAGATCAAGGTGATCAAGGAGATCCGGTCATTCACCGACCTGGGTCTGAAGGAGGCGAAGGAGCTAGTGGAGAAGGCACCCGCTGTGATCAAGGGTGGTGTCTCGAAGGAGGAGGCTCGGACAATCATCGATAAGATGAAGGCTGTTGGTGCCAAGGTCGTCATGGACTGATCAGCATCCTCATTTCAATTTTCAAGGTTCTGTTCACAGTTTTTAACTGTGCTTTCTCATGGTTTGATGGTTGATGCGGATTGGGGTGCCAGTGTTAATATCCTGTCAATTGGCATTTTGAAAGCCCAATGATCTTACAACACACTGGCCAATCCGATGGTGCCATCATGTGTTTCTTGTNCGGTCGATGAATTCTCTGTCACTAACAAGAAACATGGAATAATNTCTGTNGANAAATGAGATCAACAGGGTGCAGAGCTGGAGTGTGACATTGAGCCTGGAGTACTATCTNTTTTGGTTGGCTTCACCGGCTGTATATTATCTCATNTTTGTANTGTACTGAAGCTCTGAGCTAGATCACGCTGTGGCGTTTCAGTTTTATTCTCGCAAAAAAAAAAAAAAAAAAAAAACCTCAGGGGGCCAGTCCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4471#0 CACCGCGTCGAACACACTGACACCAGAGAACCCTAGCCTCGCCGGTCGCCGCCATGGCCG 60 consensus_4471#1 ------------------------------------------------------------ consensus_4471#0 CCTCGCTCCTCCGCTCCGGCCACCGCCTCCGCCTCCTCCGCCACGGCAGCCTCTCCTGGG 120 consensus_4471#1 ------------------------------------------------------------ consensus_4471#0 CCTCCTTCTCCGCCGCCGCCGCGGAGGAGCTCATCGACGTCCGCAAGCTCCCCACTGACT 180 consensus_4471#1 ------------------------------------------------------------ consensus_4471#0 ACGACGCCTCCACCTTCGACCCCACCGCCCCGTCCCGCCCACCGCCCTCCGACCGCGTCT 240 consensus_4471#1 ------------------------------------------------------------ consensus_4471#0 GGCGCCTCGTCGAGGACGTCTCCTCCCTCACCCTCGCCGAGTCCGCCGCTCTCTCCGCCC 300 consensus_4471#1 ------------------------------------------------------------ consensus_4471#0 TCCTCCTCCGCCGCCTCGACGTCCCCGCTCCCCCCATCGCCATCCTCAACTCCGCCGCGG 360 consensus_4471#1 ------------------------------------------------------------ consensus_4471#0 GCCTCGGCGGCGGCGGCGGCGCGGGTGCCGCGGGCGCCGCCGGGGAGAAGGCCGGTGGGG 420 consensus_4471#1 ------------------------------------------------------------ consensus_4471#0 CGGCGGCGGCTGAGAAGACGGTGTTCGAGCTGCGCTTGGAGGCGTTCGATGCGGCGAGCA 480 consensus_4471#1 -----CCGGCTGAGAAGACGGTGTTCGAGCTGCGCTTGGAGGCTTTCGATGCGGCGAGCA 55 ************************************* **************** consensus_4471#0 AGATCAAGGTGATCAAGGAGATCCGGTCATTCACCGACCTGGGTCTGAAGGAGGCGAAGG 540 consensus_4471#1 AGATCAAGGTGATCAAGGAGATCCGGTCATTCACCGACCTGGGTCTGAAGGAGGCGAAGG 115 ************************************************************ consensus_4471#0 AGCTAGTGGAGAAGGCACCCGCTGTGATCAAGGGTGGTGTCTCGAAGGAGGAGGCTCGGA 600 consensus_4471#1 AGCTAGTGGAGAAGGCACCCGCTGTGATCAAGGGTGGTGTCTCGAAGGAGGAGGCTCGGA 175 ************************************************************ consensus_4471#0 CAATCATCGATAAGATGAAGGCTGTTGGTGCCAAGGTCGTCATGGACTGATCAGCATCCT 660 consensus_4471#1 CAATCATCGATAAGATGAAGGCTGTTGGTGCCAAGGTCGTCATGGACTGATCAGCATCCT 235 ************************************************************ consensus_4471#0 CATTTCAATTTTCAAGGTTCTGTTCACAGTTTTTAACTGTGCTTTCTCATGGTTTGATGG 720 consensus_4471#1 CATTTCAATTTTCAAGGTTCTGTTCACAGTTTTTAACTGTGCTTTCTCATGGTTTGATGG 295 ************************************************************ consensus_4471#0 TTGATGCGGATTGGGGTGCCAGTGTTAATATCCTGTCAATTGGCATTTTGAAAGCCCAAT 780 consensus_4471#1 TTGATGCGGATTGGGGTGCCAGTGTTAATATCCTGTCAATTGGCATTTTGAAAGCCCAAT 355 ************************************************************ consensus_4471#0 GATCTTACAACACACTGGCCAATCCGATGGTGCCATCATGTGTTTCTTGTTCGGTCGATG 840 consensus_4471#1 GATCTTACAACACACTGGCCAATCCGATGGTGCCATCATGTGTTTCTTGTNCGGTCGATG 415 ************************************************** ********* consensus_4471#0 AATTTTCTGTCACTAACAAGAAACATGGAATAATTTCTGTTGAAAAATGAGATCAACAGG 900 consensus_4471#1 AATTCTCTGTCACTAACAAGAAACATGGAATAATNTCTGTNGANAAATGAGATCAACAGG 475 **** ***************************** ***** ** **************** consensus_4471#0 GTGCAGAGCTGGAGTGTGACCTTGAGCCTGGAGTACTATCTTTTTTGGTTGGCTTCACCG 960 consensus_4471#1 GTGCAGAGCTGGAGTGTGACATTGAGCCTGGAGTACTATCTNTTTTGGTTGGCTTCACCG 535 ******************** ******************** ****************** consensus_4471#0 GCTGTATATGTATCTCATTTTTGTAATGTTACTGAAGCTACTGAGCTAGATGCACGCTGT 1020 consensus_4471#1 GCTGTATAT-TATCTCATNTTTGTANTGT-ACTGAAGCT-CTGAGCTAGAT-CACGCTGT 591 ********* ******** ****** *** ********* *********** ******** consensus_4471#0 GGCGTTCAAGTTTTTATCCTCTGCATTTGTGAAATGACCTCACATGACGGTATGATATGG 1080 consensus_4471#1 GGCGTTTCAGTTTT-ATTCTC-GCAAA-AAAAAAAAAAAAAAAAAAACCTCAGGGGGCCA 648 ****** ****** ** *** *** *** * * * ** * * consensus_4471#0 GTCATATGGACATAGATAATCCATTTATGTGTTTCTTTTTTGAAACTACAATATAGTGAA 1140 consensus_4471#1 GTCCCA------------------------------------------------------ 654 *** * consensus_4471#0 CTGATGAATGTTGTGGACTATATTTTCAAGTATGGAATTCAGGAAC 1186 consensus_4471#1 ---------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||