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Oryza sativa
cluster # 4471 cluster # 4471       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4471#0 length = 1186 sequences # 2  
consensus_4471#1 length = 654 sequences # 1  

consensusID : consensus_4471#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1186
fasta sequence
                              [CACCGCGTCGAACACACTGACACCAGAGAACCCTAGCCTCGCCGGTCGCCGCCATGGCCGCCTCGCTCCTCCGCTCCGGCCACCGCCTCCGCCTCCTCCGCCACGGCAGCCTCTCCTGGGCCTCCTTCTCCGCCGCCGCCGCGGAGGAGCTCATCGACGTCCGCAAGCTCCCCACTGACTACGACGCCTCCACCTTCGACCCCACCGCCCCGTCCCGCCCACCGCCCTCCGACCGCGTCTGGCGCCTCGTCGAGGACGTCTCCTCCCTCACCCTCGCCGAGTCCGCCGCTCTCTCCGCCCTCCTCCTCCGCCGCCTCGACGTCCCCGCTCCCCCCATCGCCATCCTCAACTCCGCCGCGGGCCTCGGCGGCGGCGGCGGCGCGGGTGCCGCGGGCGCCGCCGGGGAGAAGGCCGGTGGGGCGGCGGCGGCTGAGAAGACGGTGTTCGAGCTGCGCTTGGAGGCGTTCGATGCGGCGAGCAAGATCAAGGTGATCAAGGAGATCCGGTCATTCACCGACCTGGGTCTGAAGGAGGCGAAGGAGCTAGTGGAGAAGGCACCCGCTGTGATCAAGGGTGGTGTCTCGAAGGAGGAGGCTCGGACAATCATCGATAAGATGAAGGCTGTTGGTGCCAAGGTCGTCATGGACTGATCAGCATCCTCATTTCAATTTTCAAGGTTCTGTTCACAGTTTTTAACTGTGCTTTCTCATGGTTTGATGGTTGATGCGGATTGGGGTGCCAGTGTTAATATCCTGTCAATTGGCATTTTGAAAGCCCAATGATCTTACAACACACTGGCCAATCCGATGGTGCCATCATGTGTTTCTTGTTCGGTCGATGAATTTTCTGTCACTAACAAGAAACATGGAATAATTTCTGTTGAAAAATGAGATCAACAGGGTGCAGAGCTGGAGTGTGACCTTGAGCCTGGAGTACTATCTTTTTTGGTTGGCTTCACCGGCTGTATATGTATCTCATTTTTGTAATGTTACTGAAGCTACTGAGCTAGATGCACGCTGTGGCGTTCAAGTTTTTATCCTCTGCATTTGTGAAATGACCTCACATGACGGTATGATATGGGTCATATGGACATAGATAATCCATTTATGTGTTTCTTTTTTGAAACTACAATATAGTGAACTGATGAATGTTGTGGACTATATTTTCAAGTATGGAATTCAGGAAC]

[+] EMBL AK073023             [CACCGCGTCGAACACACTGACACCAGAGAACCCTAGCCTCGCCGGTCGCCGCCATGGCCGCCTCGCTCCTCCGCTCCGGCCACCGCCTCCGCCTCCTCCGCCACGGCAGCCTCTCCTGGGCCTCCTTCTCCGCCGCCGCCGCGGAGGAGCTCATCGACGTCCGCAAGCTCCCCACTGACTACGACGCCTCCACCTTCGACCCCACCGCCCCGTCCCGCCCACCGCCCTCCGACCGCGTCTGGCGCCTCGTCGAGGACGTCTCCTCCCTCACCCTCGCCGAGTCCGCCGCTCTCTCCGCCCTCCTCCTCCGCCGCCTCGACGTCCCCGCTCCCCCCATCGCCATCCTCAACTCCGCCGCGGGCCTCGGCGGCGGCGGCGGCGCGGGTGCCGCGGGCGCCGCCGGGGAGAAGGCCGGTGGGGCGGCGGCGGCTGAGAAGACGGTGTTCGAGCTGCGCTTGGAGGCGTTCGATGCGGCGAGCAAGATCAAGGTGATCAAGGAGATCCGGTCATTCACCGACCTGGGTCTGAAGGAGGCGAAGGAGCTAGTGGAGAAGGCACCCGCTGTGATCAAGGGTGGTGTCTCGAAGGAGGAGGCTCGGACAATCATCGATAAGATGAAGGCTGTTGGTGCCAAGGTCGTCATGGACTGATCAGCATCCTCATTTCAATTTTCAAGGTTCTGTTCACAGTTTTTAACTGTGCTTTCTCATGGTTTGATGGTTGATGCGGATTGGGGTGCCAGTGTTAATATCCTGTCAATTGGCATTTTGAAAGCCCAATGATCTTACAACACACTGGCCAATCCGATGGTGCCATCATGTGTTTCTTGTTCGGTCGATGAATTTTCTGTCACTAACAAGAAACATGGAATAATTTCTGTTGAAAAATGAGATCAACAGGGTGCAGAGCTGGAGTGTGACCTTGAGCCTGGAGTACTATCTTTTTTGGTTGGCTTCACCGGCTGTATATGTATCTCATTTTTGTAATGTTACTGAAGCTACTGAGCTAGATGCACGCTGTGGCGTTCAAGTTTTTATCCTCTGCATTTGTGAAATGACCTCACATGACGGTATGATATGGGTCATATGGACATAGATAATCCATTTATGTGTTTCTTTTTTGAAACTACAATATAGTGAACTGATGAATGTTGTGGACTATATTTTCAAGTATGGAATTCAGGAAC]
[+] EMBL AK101756             [                     ACCAGAGAACCCTAGCCTCGCCGGTCGCCGCCATGGCCGCCTCGCTCCTCCGCTCCGGCCACCGCCTCCGCCTCCTCCGCCACGGCAGCCTCTCCTGGGCCTCCTTCTCCGCCGCCGCCGCGGAGGAGCTCATCGACGTCCGCAAGCTCCCCACTGACTACGACGCCTCCACCTTCGACCCCACCGCCCCGTCCCGCCCACCGCCCTCCGACCGCGTCTGGCGCCTCGTCGAGGACGTCTCCTCCCTCACCCTCGCCGAGTCCGCCGCTCTCTCCGCCCTCCTCCTCCGCCGCCTCGACGTCCCCGCTCCCCCCATCGCCATCCTCAACTCCGCCGCGGGCCTCGGCGGCGGCGGCGGCGCGGGTGCCGCGGGCGCCGCCGGGGAGAAGGCCGGTGGGGCGGCGGCGGCTGAGAAGACGGTGTTCGAGCTGCGCTTGGAGGCGTTCGATGCGGCGAGCAAGATCAAGGTGATCAAGGAGATCCGGTCATTCACCGACCTGGGTCTGAAGGAGGCGAAGGAGCTAGTGGAGAAGGCACCCGCTGTGATCAAGGGTGGTGTCTCGAAGGAGGAGGCTCGGACAATCATCGATAAGATGAAGGCTGTTGGTGCCAAGGTCGTCATGGACTGATCAGCATCCTCATTTCAATTTTCAAGGTTCTGTTCACAGTTTTTAACTGTGCTTTCTCATGGTTTGATGGTTGATGCGGATTGGGGTGCCAGTGTTAATATCCTGTCAATTGGCATTTTGAAAGCCCAATGATCTTACAACACACTGGCCAATCCGATGGTGCCATCATGTGTTTCTTGTTCGGTCGATGAATTCTCTGTCACTAACAAGAAACATGGAATA                                                                                                                                                                                                                                                                                                                          ]


>consensus_4471#0 CACCGCGTCGAACACACTGACACCAGAGAACCCTAGCCTCGCCGGTCGCCGCCATGGCCG CCTCGCTCCTCCGCTCCGGCCACCGCCTCCGCCTCCTCCGCCACGGCAGCCTCTCCTGGG CCTCCTTCTCCGCCGCCGCCGCGGAGGAGCTCATCGACGTCCGCAAGCTCCCCACTGACT ACGACGCCTCCACCTTCGACCCCACCGCCCCGTCCCGCCCACCGCCCTCCGACCGCGTCT GGCGCCTCGTCGAGGACGTCTCCTCCCTCACCCTCGCCGAGTCCGCCGCTCTCTCCGCCC TCCTCCTCCGCCGCCTCGACGTCCCCGCTCCCCCCATCGCCATCCTCAACTCCGCCGCGG GCCTCGGCGGCGGCGGCGGCGCGGGTGCCGCGGGCGCCGCCGGGGAGAAGGCCGGTGGGG CGGCGGCGGCTGAGAAGACGGTGTTCGAGCTGCGCTTGGAGGCGTTCGATGCGGCGAGCA AGATCAAGGTGATCAAGGAGATCCGGTCATTCACCGACCTGGGTCTGAAGGAGGCGAAGG AGCTAGTGGAGAAGGCACCCGCTGTGATCAAGGGTGGTGTCTCGAAGGAGGAGGCTCGGA CAATCATCGATAAGATGAAGGCTGTTGGTGCCAAGGTCGTCATGGACTGATCAGCATCCT CATTTCAATTTTCAAGGTTCTGTTCACAGTTTTTAACTGTGCTTTCTCATGGTTTGATGG TTGATGCGGATTGGGGTGCCAGTGTTAATATCCTGTCAATTGGCATTTTGAAAGCCCAAT GATCTTACAACACACTGGCCAATCCGATGGTGCCATCATGTGTTTCTTGTTCGGTCGATG AATTTTCTGTCACTAACAAGAAACATGGAATAATTTCTGTTGAAAAATGAGATCAACAGG GTGCAGAGCTGGAGTGTGACCTTGAGCCTGGAGTACTATCTTTTTTGGTTGGCTTCACCG GCTGTATATGTATCTCATTTTTGTAATGTTACTGAAGCTACTGAGCTAGATGCACGCTGT GGCGTTCAAGTTTTTATCCTCTGCATTTGTGAAATGACCTCACATGACGGTATGATATGG GTCATATGGACATAGATAATCCATTTATGTGTTTCTTTTTTGAAACTACAATATAGTGAA CTGATGAATGTTGTGGACTATATTTTCAAGTATGGAATTCAGGAAC



consensusID : consensus_4471#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 654
fasta sequence
                              [CCGGCTGAGAAGACGGTGTTCGAGCTGCGCTTGGAGGCTTTCGATGCGGCGAGCAAGATCAAGGTGATCAAGGAGATCCGGTCATTCACCGACCTGGGTCTGAAGGAGGCGAAGGAGCTAGTGGAGAAGGCACCCGCTGTGATCAAGGGTGGTGTCTCGAAGGAGGAGGCTCGGACAATCATCGATAAGATGAAGGCTGTTGGTGCCAAGGTCGTCATGGACTGATCAGCATCCTCATTTCAATTTTCAAGGTTCTGTTCACAGTTTTTAACTGTGCTTTCTCATGGTTTGATGGTTGATGCGGATTGGGGTGCCAGTGTTAATATCCTGTCAATTGGCATTTTGAAAGCCCAATGATCTTACAACACACTGGCCAATCCGATGGTGCCATCATGTGTTTCTTGTNCGGTCGATGAATTCTCTGTCACTAACAAGAAACATGGAATAATNTCTGTNGANAAATGAGATCAACAGGGTGCAGAGCTGGAGTGTGACATTGAGCCTGGAGTACTATCTNTTTTGGTTGGCTTCACCGGCTGTATATTATCTCATNTTTGTANTGTACTGAAGCTCTGAGCTAGATCACGCTGTGGCGTTTCAGTTTTATTCTCGCAAAAAAAAAAAAAAAAAAAAAACCTCAGGGGGCCAGTCCCA]

[+] EMBL CA753050             [CCGGCTGAGAAGACGGTGTTCGAGCTGCGCTTGGAGGCTTTCGATGCGGCGAGCAAGATCAAGGTGATCAAGGAGATCCGGTCATTCACCGACCTGGGTCTGAAGGAGGCGAAGGAGCTAGTGGAGAAGGCACCCGCTGTGATCAAGGGTGGTGTCTCGAAGGAGGAGGCTCGGACAATCATCGATAAGATGAAGGCTGTTGGTGCCAAGGTCGTCATGGACTGATCAGCATCCTCATTTCAATTTTCAAGGTTCTGTTCACAGTTTTTAACTGTGCTTTCTCATGGTTTGATGGTTGATGCGGATTGGGGTGCCAGTGTTAATATCCTGTCAATTGGCATTTTGAAAGCCCAATGATCTTACAACACACTGGCCAATCCGATGGTGCCATCATGTGTTTCTTGTNCGGTCGATGAATTCTCTGTCACTAACAAGAAACATGGAATAATNTCTGTNGANAAATGAGATCAACAGGGTGCAGAGCTGGAGTGTGACATTGAGCCTGGAGTACTATCTNTTTTGGTTGGCTTCACCGGCTGTATATTATCTCATNTTTGTANTGTACTGAAGCTCTGAGCTAGATCACGCTGTGGCGTTTCAGTTTTATTCTCGCAAAAAAAAAAAAAAAAAAAAAACCTCAGGGGGCCAGTCCCA]


>consensus_4471#1 CCGGCTGAGAAGACGGTGTTCGAGCTGCGCTTGGAGGCTTTCGATGCGGCGAGCAAGATC AAGGTGATCAAGGAGATCCGGTCATTCACCGACCTGGGTCTGAAGGAGGCGAAGGAGCTA GTGGAGAAGGCACCCGCTGTGATCAAGGGTGGTGTCTCGAAGGAGGAGGCTCGGACAATC ATCGATAAGATGAAGGCTGTTGGTGCCAAGGTCGTCATGGACTGATCAGCATCCTCATTT CAATTTTCAAGGTTCTGTTCACAGTTTTTAACTGTGCTTTCTCATGGTTTGATGGTTGAT GCGGATTGGGGTGCCAGTGTTAATATCCTGTCAATTGGCATTTTGAAAGCCCAATGATCT TACAACACACTGGCCAATCCGATGGTGCCATCATGTGTTTCTTGTNCGGTCGATGAATTC TCTGTCACTAACAAGAAACATGGAATAATNTCTGTNGANAAATGAGATCAACAGGGTGCA GAGCTGGAGTGTGACATTGAGCCTGGAGTACTATCTNTTTTGGTTGGCTTCACCGGCTGT ATATTATCTCATNTTTGTANTGTACTGAAGCTCTGAGCTAGATCACGCTGTGGCGTTTCA GTTTTATTCTCGCAAAAAAAAAAAAAAAAAAAAAACCTCAGGGGGCCAGTCCCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4471#0      CACCGCGTCGAACACACTGACACCAGAGAACCCTAGCCTCGCCGGTCGCCGCCATGGCCG 60
consensus_4471#1      ------------------------------------------------------------
                                                                                  

consensus_4471#0      CCTCGCTCCTCCGCTCCGGCCACCGCCTCCGCCTCCTCCGCCACGGCAGCCTCTCCTGGG 120
consensus_4471#1      ------------------------------------------------------------
                                                                                  

consensus_4471#0      CCTCCTTCTCCGCCGCCGCCGCGGAGGAGCTCATCGACGTCCGCAAGCTCCCCACTGACT 180
consensus_4471#1      ------------------------------------------------------------
                                                                                  

consensus_4471#0      ACGACGCCTCCACCTTCGACCCCACCGCCCCGTCCCGCCCACCGCCCTCCGACCGCGTCT 240
consensus_4471#1      ------------------------------------------------------------
                                                                                  

consensus_4471#0      GGCGCCTCGTCGAGGACGTCTCCTCCCTCACCCTCGCCGAGTCCGCCGCTCTCTCCGCCC 300
consensus_4471#1      ------------------------------------------------------------
                                                                                  

consensus_4471#0      TCCTCCTCCGCCGCCTCGACGTCCCCGCTCCCCCCATCGCCATCCTCAACTCCGCCGCGG 360
consensus_4471#1      ------------------------------------------------------------
                                                                                  

consensus_4471#0      GCCTCGGCGGCGGCGGCGGCGCGGGTGCCGCGGGCGCCGCCGGGGAGAAGGCCGGTGGGG 420
consensus_4471#1      ------------------------------------------------------------
                                                                                  

consensus_4471#0      CGGCGGCGGCTGAGAAGACGGTGTTCGAGCTGCGCTTGGAGGCGTTCGATGCGGCGAGCA 480
consensus_4471#1      -----CCGGCTGAGAAGACGGTGTTCGAGCTGCGCTTGGAGGCTTTCGATGCGGCGAGCA 55
                            ************************************* ****************

consensus_4471#0      AGATCAAGGTGATCAAGGAGATCCGGTCATTCACCGACCTGGGTCTGAAGGAGGCGAAGG 540
consensus_4471#1      AGATCAAGGTGATCAAGGAGATCCGGTCATTCACCGACCTGGGTCTGAAGGAGGCGAAGG 115
                      ************************************************************

consensus_4471#0      AGCTAGTGGAGAAGGCACCCGCTGTGATCAAGGGTGGTGTCTCGAAGGAGGAGGCTCGGA 600
consensus_4471#1      AGCTAGTGGAGAAGGCACCCGCTGTGATCAAGGGTGGTGTCTCGAAGGAGGAGGCTCGGA 175
                      ************************************************************

consensus_4471#0      CAATCATCGATAAGATGAAGGCTGTTGGTGCCAAGGTCGTCATGGACTGATCAGCATCCT 660
consensus_4471#1      CAATCATCGATAAGATGAAGGCTGTTGGTGCCAAGGTCGTCATGGACTGATCAGCATCCT 235
                      ************************************************************

consensus_4471#0      CATTTCAATTTTCAAGGTTCTGTTCACAGTTTTTAACTGTGCTTTCTCATGGTTTGATGG 720
consensus_4471#1      CATTTCAATTTTCAAGGTTCTGTTCACAGTTTTTAACTGTGCTTTCTCATGGTTTGATGG 295
                      ************************************************************

consensus_4471#0      TTGATGCGGATTGGGGTGCCAGTGTTAATATCCTGTCAATTGGCATTTTGAAAGCCCAAT 780
consensus_4471#1      TTGATGCGGATTGGGGTGCCAGTGTTAATATCCTGTCAATTGGCATTTTGAAAGCCCAAT 355
                      ************************************************************

consensus_4471#0      GATCTTACAACACACTGGCCAATCCGATGGTGCCATCATGTGTTTCTTGTTCGGTCGATG 840
consensus_4471#1      GATCTTACAACACACTGGCCAATCCGATGGTGCCATCATGTGTTTCTTGTNCGGTCGATG 415
                      ************************************************** *********

consensus_4471#0      AATTTTCTGTCACTAACAAGAAACATGGAATAATTTCTGTTGAAAAATGAGATCAACAGG 900
consensus_4471#1      AATTCTCTGTCACTAACAAGAAACATGGAATAATNTCTGTNGANAAATGAGATCAACAGG 475
                      **** ***************************** ***** ** ****************

consensus_4471#0      GTGCAGAGCTGGAGTGTGACCTTGAGCCTGGAGTACTATCTTTTTTGGTTGGCTTCACCG 960
consensus_4471#1      GTGCAGAGCTGGAGTGTGACATTGAGCCTGGAGTACTATCTNTTTTGGTTGGCTTCACCG 535
                      ******************** ******************** ******************

consensus_4471#0      GCTGTATATGTATCTCATTTTTGTAATGTTACTGAAGCTACTGAGCTAGATGCACGCTGT 1020
consensus_4471#1      GCTGTATAT-TATCTCATNTTTGTANTGT-ACTGAAGCT-CTGAGCTAGAT-CACGCTGT 591
                      ********* ******** ****** *** ********* *********** ********

consensus_4471#0      GGCGTTCAAGTTTTTATCCTCTGCATTTGTGAAATGACCTCACATGACGGTATGATATGG 1080
consensus_4471#1      GGCGTTTCAGTTTT-ATTCTC-GCAAA-AAAAAAAAAAAAAAAAAAACCTCAGGGGGCCA 648
                      ******  ****** ** *** ***      ***  *    * *  **   * *      

consensus_4471#0      GTCATATGGACATAGATAATCCATTTATGTGTTTCTTTTTTGAAACTACAATATAGTGAA 1140
consensus_4471#1      GTCCCA------------------------------------------------------ 654
                      ***  *                                                      

consensus_4471#0      CTGATGAATGTTGTGGACTATATTTTCAAGTATGGAATTCAGGAAC 1186
consensus_4471#1      ----------------------------------------------
                                                                    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)