|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4471#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1186 fasta sequence
[CACCGCGTCGAACACACTGACACCAGAGAACCCTAGCCTCGCCGGTCGCCGCCATGGCCGCCTCGCTCCTCCGCTCCGGCCACCGCCTCCGCCTCCTCCGCCACGGCAGCCTCTCCTGGGCCTCCTTCTCCGCCGCCGCCGCGGAGGAGCTCATCGACGTCCGCAAGCTCCCCACTGACTACGACGCCTCCACCTTCGACCCCACCGCCCCGTCCCGCCCACCGCCCTCCGACCGCGTCTGGCGCCTCGTCGAGGACGTCTCCTCCCTCACCCTCGCCGAGTCCGCCGCTCTCTCCGCCCTCCTCCTCCGCCGCCTCGACGTCCCCGCTCCCCCCATCGCCATCCTCAACTCCGCCGCGGGCCTCGGCGGCGGCGGCGGCGCGGGTGCCGCGGGCGCCGCCGGGGAGAAGGCCGGTGGGGCGGCGGCGGCTGAGAAGACGGTGTTCGAGCTGCGCTTGGAGGCGTTCGATGCGGCGAGCAAGATCAAGGTGATCAAGGAGATCCGGTCATTCACCGACCTGGGTCTGAAGGAGGCGAAGGAGCTAGTGGAGAAGGCACCCGCTGTGATCAAGGGTGGTGTCTCGAAGGAGGAGGCTCGGACAATCATCGATAAGATGAAGGCTGTTGGTGCCAAGGTCGTCATGGACTGATCAGCATCCTCATTTCAATTTTCAAGGTTCTGTTCACAGTTTTTAACTGTGCTTTCTCATGGTTTGATGGTTGATGCGGATTGGGGTGCCAGTGTTAATATCCTGTCAATTGGCATTTTGAAAGCCCAATGATCTTACAACACACTGGCCAATCCGATGGTGCCATCATGTGTTTCTTGTTCGGTCGATGAATTTTCTGTCACTAACAAGAAACATGGAATAATTTCTGTTGAAAAATGAGATCAACAGGGTGCAGAGCTGGAGTGTGACCTTGAGCCTGGAGTACTATCTTTTTTGGTTGGCTTCACCGGCTGTATATGTATCTCATTTTTGTAATGTTACTGAAGCTACTGAGCTAGATGCACGCTGTGGCGTTCAAGTTTTTATCCTCTGCATTTGTGAAATGACCTCACATGACGGTATGATATGGGTCATATGGACATAGATAATCCATTTATGTGTTTCTTTTTTGAAACTACAATATAGTGAACTGATGAATGTTGTGGACTATATTTTCAAGTATGGAATTCAGGAAC]
[+] EMBL AK073023 [CACCGCGTCGAACACACTGACACCAGAGAACCCTAGCCTCGCCGGTCGCCGCCATGGCCGCCTCGCTCCTCCGCTCCGGCCACCGCCTCCGCCTCCTCCGCCACGGCAGCCTCTCCTGGGCCTCCTTCTCCGCCGCCGCCGCGGAGGAGCTCATCGACGTCCGCAAGCTCCCCACTGACTACGACGCCTCCACCTTCGACCCCACCGCCCCGTCCCGCCCACCGCCCTCCGACCGCGTCTGGCGCCTCGTCGAGGACGTCTCCTCCCTCACCCTCGCCGAGTCCGCCGCTCTCTCCGCCCTCCTCCTCCGCCGCCTCGACGTCCCCGCTCCCCCCATCGCCATCCTCAACTCCGCCGCGGGCCTCGGCGGCGGCGGCGGCGCGGGTGCCGCGGGCGCCGCCGGGGAGAAGGCCGGTGGGGCGGCGGCGGCTGAGAAGACGGTGTTCGAGCTGCGCTTGGAGGCGTTCGATGCGGCGAGCAAGATCAAGGTGATCAAGGAGATCCGGTCATTCACCGACCTGGGTCTGAAGGAGGCGAAGGAGCTAGTGGAGAAGGCACCCGCTGTGATCAAGGGTGGTGTCTCGAAGGAGGAGGCTCGGACAATCATCGATAAGATGAAGGCTGTTGGTGCCAAGGTCGTCATGGACTGATCAGCATCCTCATTTCAATTTTCAAGGTTCTGTTCACAGTTTTTAACTGTGCTTTCTCATGGTTTGATGGTTGATGCGGATTGGGGTGCCAGTGTTAATATCCTGTCAATTGGCATTTTGAAAGCCCAATGATCTTACAACACACTGGCCAATCCGATGGTGCCATCATGTGTTTCTTGTTCGGTCGATGAATTTTCTGTCACTAACAAGAAACATGGAATAATTTCTGTTGAAAAATGAGATCAACAGGGTGCAGAGCTGGAGTGTGACCTTGAGCCTGGAGTACTATCTTTTTTGGTTGGCTTCACCGGCTGTATATGTATCTCATTTTTGTAATGTTACTGAAGCTACTGAGCTAGATGCACGCTGTGGCGTTCAAGTTTTTATCCTCTGCATTTGTGAAATGACCTCACATGACGGTATGATATGGGTCATATGGACATAGATAATCCATTTATGTGTTTCTTTTTTGAAACTACAATATAGTGAACTGATGAATGTTGTGGACTATATTTTCAAGTATGGAATTCAGGAAC]
[+] EMBL AK101756 [ ACCAGAGAACCCTAGCCTCGCCGGTCGCCGCCATGGCCGCCTCGCTCCTCCGCTCCGGCCACCGCCTCCGCCTCCTCCGCCACGGCAGCCTCTCCTGGGCCTCCTTCTCCGCCGCCGCCGCGGAGGAGCTCATCGACGTCCGCAAGCTCCCCACTGACTACGACGCCTCCACCTTCGACCCCACCGCCCCGTCCCGCCCACCGCCCTCCGACCGCGTCTGGCGCCTCGTCGAGGACGTCTCCTCCCTCACCCTCGCCGAGTCCGCCGCTCTCTCCGCCCTCCTCCTCCGCCGCCTCGACGTCCCCGCTCCCCCCATCGCCATCCTCAACTCCGCCGCGGGCCTCGGCGGCGGCGGCGGCGCGGGTGCCGCGGGCGCCGCCGGGGAGAAGGCCGGTGGGGCGGCGGCGGCTGAGAAGACGGTGTTCGAGCTGCGCTTGGAGGCGTTCGATGCGGCGAGCAAGATCAAGGTGATCAAGGAGATCCGGTCATTCACCGACCTGGGTCTGAAGGAGGCGAAGGAGCTAGTGGAGAAGGCACCCGCTGTGATCAAGGGTGGTGTCTCGAAGGAGGAGGCTCGGACAATCATCGATAAGATGAAGGCTGTTGGTGCCAAGGTCGTCATGGACTGATCAGCATCCTCATTTCAATTTTCAAGGTTCTGTTCACAGTTTTTAACTGTGCTTTCTCATGGTTTGATGGTTGATGCGGATTGGGGTGCCAGTGTTAATATCCTGTCAATTGGCATTTTGAAAGCCCAATGATCTTACAACACACTGGCCAATCCGATGGTGCCATCATGTGTTTCTTGTTCGGTCGATGAATTCTCTGTCACTAACAAGAAACATGGAATA ]
consensusID : consensus_4471#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 654 fasta sequence
[CCGGCTGAGAAGACGGTGTTCGAGCTGCGCTTGGAGGCTTTCGATGCGGCGAGCAAGATCAAGGTGATCAAGGAGATCCGGTCATTCACCGACCTGGGTCTGAAGGAGGCGAAGGAGCTAGTGGAGAAGGCACCCGCTGTGATCAAGGGTGGTGTCTCGAAGGAGGAGGCTCGGACAATCATCGATAAGATGAAGGCTGTTGGTGCCAAGGTCGTCATGGACTGATCAGCATCCTCATTTCAATTTTCAAGGTTCTGTTCACAGTTTTTAACTGTGCTTTCTCATGGTTTGATGGTTGATGCGGATTGGGGTGCCAGTGTTAATATCCTGTCAATTGGCATTTTGAAAGCCCAATGATCTTACAACACACTGGCCAATCCGATGGTGCCATCATGTGTTTCTTGTNCGGTCGATGAATTCTCTGTCACTAACAAGAAACATGGAATAATNTCTGTNGANAAATGAGATCAACAGGGTGCAGAGCTGGAGTGTGACATTGAGCCTGGAGTACTATCTNTTTTGGTTGGCTTCACCGGCTGTATATTATCTCATNTTTGTANTGTACTGAAGCTCTGAGCTAGATCACGCTGTGGCGTTTCAGTTTTATTCTCGCAAAAAAAAAAAAAAAAAAAAAACCTCAGGGGGCCAGTCCCA]
[+] EMBL CA753050 [CCGGCTGAGAAGACGGTGTTCGAGCTGCGCTTGGAGGCTTTCGATGCGGCGAGCAAGATCAAGGTGATCAAGGAGATCCGGTCATTCACCGACCTGGGTCTGAAGGAGGCGAAGGAGCTAGTGGAGAAGGCACCCGCTGTGATCAAGGGTGGTGTCTCGAAGGAGGAGGCTCGGACAATCATCGATAAGATGAAGGCTGTTGGTGCCAAGGTCGTCATGGACTGATCAGCATCCTCATTTCAATTTTCAAGGTTCTGTTCACAGTTTTTAACTGTGCTTTCTCATGGTTTGATGGTTGATGCGGATTGGGGTGCCAGTGTTAATATCCTGTCAATTGGCATTTTGAAAGCCCAATGATCTTACAACACACTGGCCAATCCGATGGTGCCATCATGTGTTTCTTGTNCGGTCGATGAATTCTCTGTCACTAACAAGAAACATGGAATAATNTCTGTNGANAAATGAGATCAACAGGGTGCAGAGCTGGAGTGTGACATTGAGCCTGGAGTACTATCTNTTTTGGTTGGCTTCACCGGCTGTATATTATCTCATNTTTGTANTGTACTGAAGCTCTGAGCTAGATCACGCTGTGGCGTTTCAGTTTTATTCTCGCAAAAAAAAAAAAAAAAAAAAAACCTCAGGGGGCCAGTCCCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4471#0 CACCGCGTCGAACACACTGACACCAGAGAACCCTAGCCTCGCCGGTCGCCGCCATGGCCG 60
consensus_4471#1 ------------------------------------------------------------
consensus_4471#0 CCTCGCTCCTCCGCTCCGGCCACCGCCTCCGCCTCCTCCGCCACGGCAGCCTCTCCTGGG 120
consensus_4471#1 ------------------------------------------------------------
consensus_4471#0 CCTCCTTCTCCGCCGCCGCCGCGGAGGAGCTCATCGACGTCCGCAAGCTCCCCACTGACT 180
consensus_4471#1 ------------------------------------------------------------
consensus_4471#0 ACGACGCCTCCACCTTCGACCCCACCGCCCCGTCCCGCCCACCGCCCTCCGACCGCGTCT 240
consensus_4471#1 ------------------------------------------------------------
consensus_4471#0 GGCGCCTCGTCGAGGACGTCTCCTCCCTCACCCTCGCCGAGTCCGCCGCTCTCTCCGCCC 300
consensus_4471#1 ------------------------------------------------------------
consensus_4471#0 TCCTCCTCCGCCGCCTCGACGTCCCCGCTCCCCCCATCGCCATCCTCAACTCCGCCGCGG 360
consensus_4471#1 ------------------------------------------------------------
consensus_4471#0 GCCTCGGCGGCGGCGGCGGCGCGGGTGCCGCGGGCGCCGCCGGGGAGAAGGCCGGTGGGG 420
consensus_4471#1 ------------------------------------------------------------
consensus_4471#0 CGGCGGCGGCTGAGAAGACGGTGTTCGAGCTGCGCTTGGAGGCGTTCGATGCGGCGAGCA 480
consensus_4471#1 -----CCGGCTGAGAAGACGGTGTTCGAGCTGCGCTTGGAGGCTTTCGATGCGGCGAGCA 55
************************************* ****************
consensus_4471#0 AGATCAAGGTGATCAAGGAGATCCGGTCATTCACCGACCTGGGTCTGAAGGAGGCGAAGG 540
consensus_4471#1 AGATCAAGGTGATCAAGGAGATCCGGTCATTCACCGACCTGGGTCTGAAGGAGGCGAAGG 115
************************************************************
consensus_4471#0 AGCTAGTGGAGAAGGCACCCGCTGTGATCAAGGGTGGTGTCTCGAAGGAGGAGGCTCGGA 600
consensus_4471#1 AGCTAGTGGAGAAGGCACCCGCTGTGATCAAGGGTGGTGTCTCGAAGGAGGAGGCTCGGA 175
************************************************************
consensus_4471#0 CAATCATCGATAAGATGAAGGCTGTTGGTGCCAAGGTCGTCATGGACTGATCAGCATCCT 660
consensus_4471#1 CAATCATCGATAAGATGAAGGCTGTTGGTGCCAAGGTCGTCATGGACTGATCAGCATCCT 235
************************************************************
consensus_4471#0 CATTTCAATTTTCAAGGTTCTGTTCACAGTTTTTAACTGTGCTTTCTCATGGTTTGATGG 720
consensus_4471#1 CATTTCAATTTTCAAGGTTCTGTTCACAGTTTTTAACTGTGCTTTCTCATGGTTTGATGG 295
************************************************************
consensus_4471#0 TTGATGCGGATTGGGGTGCCAGTGTTAATATCCTGTCAATTGGCATTTTGAAAGCCCAAT 780
consensus_4471#1 TTGATGCGGATTGGGGTGCCAGTGTTAATATCCTGTCAATTGGCATTTTGAAAGCCCAAT 355
************************************************************
consensus_4471#0 GATCTTACAACACACTGGCCAATCCGATGGTGCCATCATGTGTTTCTTGTTCGGTCGATG 840
consensus_4471#1 GATCTTACAACACACTGGCCAATCCGATGGTGCCATCATGTGTTTCTTGTNCGGTCGATG 415
************************************************** *********
consensus_4471#0 AATTTTCTGTCACTAACAAGAAACATGGAATAATTTCTGTTGAAAAATGAGATCAACAGG 900
consensus_4471#1 AATTCTCTGTCACTAACAAGAAACATGGAATAATNTCTGTNGANAAATGAGATCAACAGG 475
**** ***************************** ***** ** ****************
consensus_4471#0 GTGCAGAGCTGGAGTGTGACCTTGAGCCTGGAGTACTATCTTTTTTGGTTGGCTTCACCG 960
consensus_4471#1 GTGCAGAGCTGGAGTGTGACATTGAGCCTGGAGTACTATCTNTTTTGGTTGGCTTCACCG 535
******************** ******************** ******************
consensus_4471#0 GCTGTATATGTATCTCATTTTTGTAATGTTACTGAAGCTACTGAGCTAGATGCACGCTGT 1020
consensus_4471#1 GCTGTATAT-TATCTCATNTTTGTANTGT-ACTGAAGCT-CTGAGCTAGAT-CACGCTGT 591
********* ******** ****** *** ********* *********** ********
consensus_4471#0 GGCGTTCAAGTTTTTATCCTCTGCATTTGTGAAATGACCTCACATGACGGTATGATATGG 1080
consensus_4471#1 GGCGTTTCAGTTTT-ATTCTC-GCAAA-AAAAAAAAAAAAAAAAAAACCTCAGGGGGCCA 648
****** ****** ** *** *** *** * * * ** * *
consensus_4471#0 GTCATATGGACATAGATAATCCATTTATGTGTTTCTTTTTTGAAACTACAATATAGTGAA 1140
consensus_4471#1 GTCCCA------------------------------------------------------ 654
*** *
consensus_4471#0 CTGATGAATGTTGTGGACTATATTTTCAAGTATGGAATTCAGGAAC 1186
consensus_4471#1 ----------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||