cluster # 4476

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Oryza sativa
cluster # 4476 cluster # 4476 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4476#0 length = 743 sequences # 2

consensus_4476#1 length = 379 sequences # 1

consensusID : consensus_4476#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 743
fasta sequence

                              [GAGAGCTTGCTGCCTGTCCTCGACAACTTTGAAAGAGCAAAAACACAAATAAAGGTGGAAACTGAGCAAGAAACAAAAAATAAACGGCAGCTATCAGAGCATTTATAAGCAGTTTATTGATATTCTGAACTCACTAGGAGTTGAAGATGTGGAGACTGTTGGCAAACCATTTGATCCTATGCTTCATGAGGCTATTATGAGAGAAGAATCAGTGGAGTATGAAGAAGGGGTCATCCTTCAGGAATTTCGTAAGGGTTTTAAACTTGGGGAGAGACTATTGCGCCCTGCTATGGTCAAGGTGTCTGCAGGACCAGGCCCTGAAAAACCCGTGTATGGCGATCCTGCGATGGTTGAGGATAGTGTAGCACC-TCAAAAGGT-CAAGGAGGCTGAAGATGATGGTTTTGATGATGATAATGCTGAGTGATGGGGCTTTATTTTTTATTTCACAGGAAAAGT-CCAGAAATTTTGATGTTTTTCTGGAATGTGTCAAGCAGGTAATAGGATAGAGTTAGAAATTTGACTCAAAATTTCCCCCTTCCTGCTGTTGACGCTGAGTGTTGATATTGCCTCAAAATTTCTGTTTCCTCCGCGTGTGGTCAATTGTTATGGTTAGGAAATTTTCTCCGTTCATCGAGCAGTTGCAATGATAAGCAGAGGTAAATTGGTTTTTGATCGGTTGGGAGTATTGGAGATCATGTAAAACAACAGTAGTAGAGAATTCGATCAGCTCTTTTGTTTTTTCT]

[+] EMBL CA764945             [GAGAGCTTGCTGCCTGTCCTCGACAACTTTGAAAGAGCAAAAACACAAATAAAGGTGGAAACTGAGCAAGAAACAAAAAATAAACGGCAGCTATCAGAGCATTTATAAGCAGTTTATTGATATTCTGAACTCACTAGGAGTTGAAGATGTGGAGACTGTTGGCAAACCATTTGATCCTATGCTTCATGAGGCTATTATGAGAGAAGAATCAGTGGAGTATGAAGAAGGGGTCATCCTTCAGGAATTTCGTAAGGGTTTTAAACTTGGGGAGAGACTATTGCGCCCTGCTATGGTCAAGGTGTCTGCAGGACCAGGCCCTGAAAAACCCGTGTATGGCGATCCTGCGATGGTTGAGGATAGTGTAGCACC TCAAAAGGT CAAGGAGGCTGAAGATGATGGTTTTGATGATGATAATGCTGAGTGATGGGGCTTTATTTTTTATTTCACAGGAAAAGT CCAGAAATTTTGATGTTTTTCTGGAATGTGTCAAGCAGGTAATAGGATAGAGTTAGAAATTTGACTCAAAATTTCCCCCTTCCTGCTGTTGACGCTGAGTGTTGATATTGCCTCAAAATTTCT                                                                                                                                                                    ]
[-] EMBL C28644               [                                                                                                                                                                                                                                                                                                                                                                            GCACCNTCAAAAGGTCCAAGGAGGCTGAAGATGATGGTTTTGATGATGATAATGCTGAGTGATGGGGCTTTATTTNTTATTTCACAGGAAAAGTCCCAGAAATTTTGATGTTTTTCTGGAATGTGTCAAGCAGGTAATAGGATAGAGTTAGAAATTTGACTCAAAATTTCCCCCTTCCTGCTGTTGACGCTGAGTGTTGATATTGCCTCAAAATTTCTGTTTCCTCCGCGTGTGGTCAATTGTTATGGTTAGGAAATTTTCTCCGTTCATCGAGCAGTTGCAATGATAAGCAGAGGTAAATTGGTTTTTGATCGGTTGGGAGTATTGGAGATCATGTAAAACAACAGTAGTAGAGAATTCGATCAGCTCTTTTGTTTTTTCT]




>consensus_4476#0
GAGAGCTTGCTGCCTGTCCTCGACAACTTTGAAAGAGCAAAAACACAAATAAAGGTGGAA
ACTGAGCAAGAAACAAAAAATAAACGGCAGCTATCAGAGCATTTATAAGCAGTTTATTGA
TATTCTGAACTCACTAGGAGTTGAAGATGTGGAGACTGTTGGCAAACCATTTGATCCTAT
GCTTCATGAGGCTATTATGAGAGAAGAATCAGTGGAGTATGAAGAAGGGGTCATCCTTCA
GGAATTTCGTAAGGGTTTTAAACTTGGGGAGAGACTATTGCGCCCTGCTATGGTCAAGGT
GTCTGCAGGACCAGGCCCTGAAAAACCCGTGTATGGCGATCCTGCGATGGTTGAGGATAG
TGTAGCACCTCAAAAGGTCAAGGAGGCTGAAGATGATGGTTTTGATGATGATAATGCTGA
GTGATGGGGCTTTATTTTTTATTTCACAGGAAAAGTCCAGAAATTTTGATGTTTTTCTGG
AATGTGTCAAGCAGGTAATAGGATAGAGTTAGAAATTTGACTCAAAATTTCCCCCTTCCT
GCTGTTGACGCTGAGTGTTGATATTGCCTCAAAATTTCTGTTTCCTCCGCGTGTGGTCAA
TTGTTATGGTTAGGAAATTTTCTCCGTTCATCGAGCAGTTGCAATGATAAGCAGAGGTAA
ATTGGTTTTTGATCGGTTGGGAGTATTGGAGATCATGTAAAACAACAGTAGTAGAGAATT
CGATCAGCTCTTTTGTTTTTTCT

consensusID : consensus_4476#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 379
fasta sequence

                              [CCCTTCAGGAATTCCNTAAGGGTTTTAAACTTGGGGAGAGATTATTGCNCCCTGCTATGGTCAAGGTGTCTNCAGGACCAGGCCCTGAAAAACCCGTGTATGACGANCCTGCGATGGTTGAAGATAGTGTAGCACCTCAAAAGGTCAAGGAGGCTGAANATGATGGTTTTGATGATGATAATGCTGANTGATGGGGCTTTANTTTTTATTTCACAGGAAAAGTCCAGAAANTTTGATGTTTTTCTGGAATGTGTCAANCAGGTNATAGGATAGAGTTAGAAATTTGACTCAAAANTTCCCCCTTCCTGCTGTTNACNCTGANTGTTGATATTGCCTCAAAANTTCTGTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU108722             [CCCTTCAGGAATTCCNTAAGGGTTTTAAACTTGGGGAGAGATTATTGCNCCCTGCTATGGTCAAGGTGTCTNCAGGACCAGGCCCTGAAAAACCCGTGTATGACGANCCTGCGATGGTTGAAGATAGTGTAGCACCTCAAAAGGTCAAGGAGGCTGAANATGATGGTTTTGATGATGATAATGCTGANTGATGGGGCTTTANTTTTTATTTCACAGGAAAAGTCCAGAAANTTTGATGTTTTTCTGGAATGTGTCAANCAGGTNATAGGATAGAGTTAGAAATTTGACTCAAAANTTCCCCCTTCCTGCTGTTNACNCTGANTGTTGATATTGCCTCAAAANTTCTGTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_4476#1
CCCTTCAGGAATTCCNTAAGGGTTTTAAACTTGGGGAGAGATTATTGCNCCCTGCTATGG
TCAAGGTGTCTNCAGGACCAGGCCCTGAAAAACCCGTGTATGACGANCCTGCGATGGTTG
AAGATAGTGTAGCACCTCAAAAGGTCAAGGAGGCTGAANATGATGGTTTTGATGATGATA
ATGCTGANTGATGGGGCTTTANTTTTTATTTCACAGGAAAAGTCCAGAAANTTTGATGTT
TTTCTGGAATGTGTCAANCAGGTNATAGGATAGAGTTAGAAATTTGACTCAAAANTTCCC
CCTTCCTGCTGTTNACNCTGANTGTTGATATTGCCTCAAAANTTCTGTTTCCAAAAAAAA
AAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4476#0      GAGAGCTTGCTGCCTGTCCTCGACAACTTTGAAAGAGCAAAAACACAAATAAAGGTGGAA 60
consensus_4476#1      ------------------------------------------------------------
                                                                                  

consensus_4476#0      ACTGAGCAAGAAACAAAAAATAAACGGCAGCTATCAGAGCATTTATAAGCAGTTTATTGA 120
consensus_4476#1      ------------------------------------------------------------
                                                                                  

consensus_4476#0      TATTCTGAACTCACTAGGAGTTGAAGATGTGGAGACTGTTGGCAAACCATTTGATCCTAT 180
consensus_4476#1      ------------------------------------------------------------
                                                                                  

consensus_4476#0      GCTTCATGAGGCTATTATGAGAGAAGAATCAGTGGAGTATGAAGAAGGGGTCATCCTTCA 240
consensus_4476#1      -----------------------------------------------------CCCTTCA 7
                                                                            ******

consensus_4476#0      GGAATTTCGTAAGGGTTTTAAACTTGGGGAGAGACTATTGCGCCCTGCTATGGTCAAGGT 300
consensus_4476#1      GGAATTCCNTAAGGGTTTTAAACTTGGGGAGAGATTATTGCNCCCTGCTATGGTCAAGGT 67
                      ****** * ************************* ****** ******************

consensus_4476#0      GTCTGCAGGACCAGGCCCTGAAAAACCCGTGTATGGCGATCCTGCGATGGTTGAGGATAG 360
consensus_4476#1      GTCTNCAGGACCAGGCCCTGAAAAACCCGTGTATGACGANCCTGCGATGGTTGAAGATAG 127
                      **** ****************************** *** ************** *****

consensus_4476#0      TGTAGCACCTCAAAAGGTCAAGGAGGCTGAAGATGATGGTTTTGATGATGATAATGCTGA 420
consensus_4476#1      TGTAGCACCTCAAAAGGTCAAGGAGGCTGAANATGATGGTTTTGATGATGATAATGCTGA 187
                      ******************************* ****************************

consensus_4476#0      GTGATGGGGCTTTATTTTTTATTTCACAGGAAAAGTCCAGAAATTTTGATGTTTTTCTGG 480
consensus_4476#1      NTGATGGGGCTTTANTTTTTATTTCACAGGAAAAGTCCAGAAANTTTGATGTTTTTCTGG 247
                       ************* **************************** ****************

consensus_4476#0      AATGTGTCAAGCAGGTAATAGGATAGAGTTAGAAATTTGACTCAAAATTTCCCCCTTCCT 540
consensus_4476#1      AATGTGTCAANCAGGTNATAGGATAGAGTTAGAAATTTGACTCAAAANTTCCCCCTTCCT 307
                      ********** ***** ****************************** ************

consensus_4476#0      GCTGTTGACGCTGAGTGTTGATATTGCCTCAAAATTTCTGTTTCCTCCGCGTGTGGTCAA 600
consensus_4476#1      GCTGTTNACNCTGANTGTTGATATTGCCTCAAAANTTCTGTTTCC-----AAAAAAAAAA 362
                      ****** ** **** ******************* **********             **

consensus_4476#0      TTGTTATGGTTAGGAAATTTTCTCCGTTCATCGAGCAGTTGCAATGATAAGCAGAGGTAA 660
consensus_4476#1      AAAAAAAAAAAAAAAAA------------------------------------------- 379
                           *     *  ***                                           

consensus_4476#0      ATTGGTTTTTGATCGGTTGGGAGTATTGGAGATCATGTAAAACAACAGTAGTAGAGAATT 720
consensus_4476#1      ------------------------------------------------------------
                                                                                  

consensus_4476#0      CGATCAGCTCTTTTGTTTTTTCT 743
consensus_4476#1      -----------------------