These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4484#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1063 fasta sequence [GCCACCGCCGCGCTCCGACTCCGAGCCGCCTTCCTCTCCCCTCCTCCTCCTCCCGCCGCCGCCGCCGCCTCCGCAGCCGCAGCTTCGAGGCTCCTCCCTCGCCGGCCCACCGCCTCCATCCTCCTCCTCCCCCTGCGCCGCCTCTGCTCCGTCCCTCCCCACGCGGTAGGCGACGCCGGCACCGGAAGCAGCTCCCAGCCGTCGCCGGTGATGGACGCGCAGTTCGAGTCCTTCCGCGCGCAGCTCGACGAGTCCTCCACGCTCCGCGACCGCATCCGCGCCGTCGTCTCCGAGGTCGAGTCCGCCTCCCGCGTCGCCTCCGCCGCGCTCCTCCTCGTGCACCAGCCCGTCCCCCTCGCAGATGTGCTCGGGAAGGCGAAGGCGCAGGTGGAGGTGATCAAGGGGCTCTACTCGCGGCTCGCCGAGATCCTCAAGGAGTGCCCGGGCCAGTACTACAGGTACCACGGCGATTGGAGGAGCGAGACGCAGGCGGTGGTGTCGATGCTCGCCTTCATGCACTGGCTTGAGACCGGCGGCCTCCTCATGCACGCCGAGGCCCAGGAGAAGCTAGGATTGAGCTCCGGGGAGTTTGGCCTGGATGTTGAAGATTACCTTACTGGATTGTGCTTCATGTCCAACGATTTCCCGAGATATGTAGTGAACCGTGTCACTGCTGGAGACTATGACTGTCCAAGAAAGGTGTTGTCATTTCTGACAGACCTTCATGCTTCATTTAGGATGCTGAACCTGCGCAATGACTTTCTACGTAAGAAGTTTGATGGGATGAAGTATGATTTGAGGAGGGTAGAGGAGGTGTATTATGATGTGAAGATTCGAGGACTTGTACCAGGGGAGTCCAAACAAGAGGCAGCTTAGCAAAGACTGTCGTTCCTCACCGAGTTGTTTGGATCCGTCACGCGTTTAGCAAGATCCGTCACTTGTCTAAACTGTGCTAGTTCCTGTTGGAGTCATTTGGATTCCTCTAATATCGACTGGGCTGGCCTATGCTGCCAAATTTACCCGAACCCTTCTAGAGTAGGCATGTGGCAAATATATTCAGATC] [+] EMBL AK063397 [GCCACCGCCGCGCTCCGACTCCGAGCCGCCTTCCTCTCCCCTCCTCCTCCTCCCGCCGCCGCCGCCGCCTCCGCAGCCGCAGCTTCGAGGCTCCTCCCTCGCCGGCCCACCGCCTCCATCCTCCTCCTCCCCCTGCGCCGCCTCTGCTCCGTCCCTCCCCACGCGGTAGGCGACGCCGGCACCGGAAGCAGCTCCCAGCCGTCGCCGGTGATGGACGCGCAGTTCGAGTCCTTCCGCGCGCAGCTCGACGAGTCCTCCACGCTCCGCGACCGCATCCGCGCCGTCGTCTCCGAGGTCGAGTCCGCCTCCCGCGTCGCCTCCGCCGCGCTCCTCCTCGTGCACCAGCCCGTCCCCCTCGCAGATGTGCTCGGGAAGGCGAAGGCGCAGGTGGAGGTGATCAAGGGGCTCTACTCGCGGCTCGCCGAGATCCTCAAGGAGTGCCCGGGCCAGTACTACAGGTACCACGGCGATTGGAGGAGCGAGACGCAGGCGGTGGTGTCGATGCTCGCCTTCATGCACTGGCTTGAGACCGGCGGCCTCCTCATGCACGCCGAGGCCCAGGAGAAGCTAGGATTGAGCTCCGGGGAGTTTGGCCTGGATGTTGAAGATTACCTTACTGGATTGTGCTTCATGTCCAACGATTTCCCGAGATATGTAGTGAACCGTGTCACTGCTGGAGACTATGACTGTCCAAGAAAGGTGTTGTCATTTCTGACAGACCTTCATGCTTCATTTAGGATGCTGAACCTGCGCAATGACTTTCTACGTAAGAAGTTTGATGGGATGAAGTATGATTTGAGGAGGGTAGAGGAGGTGTATTATGATGTGAAGATTCGAGGACTTGTACCAGGGGAGTCCAAACAAGAGGCAGCTTAGCAAAGACTGTCGTTCCTCACCGAGTTGTTTGGATCCGTCACGCGTTTAGCAAGATCCGTCACTTGTCTAAACTGTGCTAGTTCCTGTTGGAGTCATTTGGATTCCTCTAATATCGACTGGGCTGGCCTATGCTGCCAAATTTACCCGAACCCTTCTAGAGTAGGCATGTGGCAAATATATTCAGATC] consensusID : consensus_4484#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 608 fasta sequence [GATGCTCACCTTCATGCACTGGCTTGAGACCGGCGGCCTCCTCATGCACGCCGAGGCCCAGGAGAAGCTAGGATTGAGCTCCGGGGAGTTTGGTCTGGATGTTGAAGATTACCTTACTGGACTGTGCTTCATGTCCAACGATTTCCCGAGATATGTAGTGAATCGTGTCACTGCTGGAGACTATGACTGTCCAAGAAAGGTGTTGACATTTCTGACAGACCTTCATGCTTCATTTAGGATGCTGAACCTGCGCAATGACTTTCTGCGTAAGAAGTTTGATGGGATGAAGTATGATTTGAGGAGGGTAGAGGAGGTGTATTATGATGTGAAGATTCGAGGACTTGTACCAGGGGAGTCCAAACAAGAGGCAGCTTAGCAAGACTGTCGTTCCTCACCGAGTGGTTTGGATCCGTCATGCGTTTAGCAAGATCCGTCACTTGTTCTCCTGTCTCCTGTCTAAACTGTGCTAGTTCCTGTTGGAGTCATTTAGCTTCCTCTAATATCGACTGGGCTGGCCTATGCTGCCAAATTTACCCGAACCCTTCTAAAGTAGGCATGTGGCAAATATATTCAGATCTGTTCTAATGAAAATGATTGATCTGGACTAA] [+] EMBL CA767151 [GATGCTCACCTTCATGCACTGGCTTGAGACCGGCGGCCTCCTCATGCACGCCGAGGCCCAGGAGAAGCTAGGATTGAGCTCCGGGGAGTTTGGTCTGGATGTTGAAGATTACCTTACTGGACTGTGCTTCATGTCCAACGATTTCCCGAGATATGTAGTGAATCGTGTCACTGCTGGAGACTATGACTGTCCAAGAAAGGTGTTGACATTTCTGACAGACCTTCATGCTTCATTTAGGATGCTGAACCTGCGCAATGACTTTCTGCGTAAGAAGTTTGATGGGATGAAGTATGATTTGAGGAGGGTAGAGGAGGTGTATTATGATGTGAAGATTCGAGGACTTGTACCAGGGGAGTCCAAACAAGAGGCAGCTTAGCAAGACTGTCGTTCCTCACCGAGTGGTTTGGATCCGTCATGCGTTTAGCAAGATCCGTCACTTGTTCTCCTGTCTCCTGTCTAAACTGTGCTAGTTCCTGTTGGAGTCATTTAGCTTCCTCTAATATCGACTGGGCTGGCCTATGCTGCCAAATTTACCCGAACCCTTCTAAAGTAGGCATGTGGCAAATATATTCAGATCTGTTCTAATGAAAATGATTGATCTGGACT ] [-] EMBL CA305788 [ AAACAAGAGGCAGCTTAGCAAGACTGTCGTTCCTCACCGAGTGGTTTGGATCCGTCATGCGTTTAGCAAGATCCGTCACTTGTTCTCCTGTCTCCTGTCTAAACTGTGCTAGTTCCTGTTGGAGTCATTTAGCTTCCTCTAATATCGACTGGGCTGGCCTATGCTGCCAAATTTACCCGAACCCTTCTAAAGTAGGCATGTGGCAAATATATTCAGATCTGTTCTAATGAAAATGATTGATCTGGACTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4484#0 GCCACCGCCGCGCTCCGACTCCGAGCCGCCTTCCTCTCCCCTCCTCCTCCTCCCGCCGCC 60 consensus_4484#1 ------------------------------------------------------------ consensus_4484#0 GCCGCCGCCTCCGCAGCCGCAGCTTCGAGGCTCCTCCCTCGCCGGCCCACCGCCTCCATC 120 consensus_4484#1 ------------------------------------------------------------ consensus_4484#0 CTCCTCCTCCCCCTGCGCCGCCTCTGCTCCGTCCCTCCCCACGCGGTAGGCGACGCCGGC 180 consensus_4484#1 ------------------------------------------------------------ consensus_4484#0 ACCGGAAGCAGCTCCCAGCCGTCGCCGGTGATGGACGCGCAGTTCGAGTCCTTCCGCGCG 240 consensus_4484#1 ------------------------------------------------------------ consensus_4484#0 CAGCTCGACGAGTCCTCCACGCTCCGCGACCGCATCCGCGCCGTCGTCTCCGAGGTCGAG 300 consensus_4484#1 ------------------------------------------------------------ consensus_4484#0 TCCGCCTCCCGCGTCGCCTCCGCCGCGCTCCTCCTCGTGCACCAGCCCGTCCCCCTCGCA 360 consensus_4484#1 ------------------------------------------------------------ consensus_4484#0 GATGTGCTCGGGAAGGCGAAGGCGCAGGTGGAGGTGATCAAGGGGCTCTACTCGCGGCTC 420 consensus_4484#1 ------------------------------------------------------------ consensus_4484#0 GCCGAGATCCTCAAGGAGTGCCCGGGCCAGTACTACAGGTACCACGGCGATTGGAGGAGC 480 consensus_4484#1 ------------------------------------------------------------ consensus_4484#0 GAGACGCAGGCGGTGGTGTCGATGCTCGCCTTCATGCACTGGCTTGAGACCGGCGGCCTC 540 consensus_4484#1 --------------------GATGCTCACCTTCATGCACTGGCTTGAGACCGGCGGCCTC 40 ******* ******************************** consensus_4484#0 CTCATGCACGCCGAGGCCCAGGAGAAGCTAGGATTGAGCTCCGGGGAGTTTGGCCTGGAT 600 consensus_4484#1 CTCATGCACGCCGAGGCCCAGGAGAAGCTAGGATTGAGCTCCGGGGAGTTTGGTCTGGAT 100 ***************************************************** ****** consensus_4484#0 GTTGAAGATTACCTTACTGGATTGTGCTTCATGTCCAACGATTTCCCGAGATATGTAGTG 660 consensus_4484#1 GTTGAAGATTACCTTACTGGACTGTGCTTCATGTCCAACGATTTCCCGAGATATGTAGTG 160 ********************* ************************************** consensus_4484#0 AACCGTGTCACTGCTGGAGACTATGACTGTCCAAGAAAGGTGTTGTCATTTCTGACAGAC 720 consensus_4484#1 AATCGTGTCACTGCTGGAGACTATGACTGTCCAAGAAAGGTGTTGACATTTCTGACAGAC 220 ** ****************************************** ************** consensus_4484#0 CTTCATGCTTCATTTAGGATGCTGAACCTGCGCAATGACTTTCTACGTAAGAAGTTTGAT 780 consensus_4484#1 CTTCATGCTTCATTTAGGATGCTGAACCTGCGCAATGACTTTCTGCGTAAGAAGTTTGAT 280 ******************************************** *************** consensus_4484#0 GGGATGAAGTATGATTTGAGGAGGGTAGAGGAGGTGTATTATGATGTGAAGATTCGAGGA 840 consensus_4484#1 GGGATGAAGTATGATTTGAGGAGGGTAGAGGAGGTGTATTATGATGTGAAGATTCGAGGA 340 ************************************************************ consensus_4484#0 CTTGTACCAGGGGAGTCCAAACAAGAGGCAGCTTAGCAAAGACTGTCGTTCCTCACCGAG 900 consensus_4484#1 CTTGTACCAGGGGAGTCCAAACAAGAGGCAGCTTAGCAA-GACTGTCGTTCCTCACCGAG 399 *************************************** ******************** consensus_4484#0 TTGTTTGGATCCGTCACGCGTTTAGCAAGATCCGTCACTTGT---------------CTA 945 consensus_4484#1 TGGTTTGGATCCGTCATGCGTTTAGCAAGATCCGTCACTTGTTCTCCTGTCTCCTGTCTA 459 * ************** ************************* *** consensus_4484#0 AACTGTGCTAGTTCCTGTTGGAGTCATTTGGATTCCTCTAATATCGACTGGGCTGGCCTA 1005 consensus_4484#1 AACTGTGCTAGTTCCTGTTGGAGTCATTTAGCTTCCTCTAATATCGACTGGGCTGGCCTA 519 ***************************** * **************************** consensus_4484#0 TGCTGCCAAATTTACCCGAACCCTTCTAGAGTAGGCATGTGGCAAATATATTCAGATC-- 1063 consensus_4484#1 TGCTGCCAAATTTACCCGAACCCTTCTAAAGTAGGCATGTGGCAAATATATTCAGATCTG 579 **************************** ***************************** consensus_4484#0 ----------------------------- consensus_4484#1 TTCTAATGAAAATGATTGATCTGGACTAA 608 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||