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Oryza sativa
cluster # 4484 cluster # 4484       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4484#0 length = 1063 sequences # 1  
consensus_4484#1 length = 608 sequences # 2  

consensusID : consensus_4484#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1063
fasta sequence
                              [GCCACCGCCGCGCTCCGACTCCGAGCCGCCTTCCTCTCCCCTCCTCCTCCTCCCGCCGCCGCCGCCGCCTCCGCAGCCGCAGCTTCGAGGCTCCTCCCTCGCCGGCCCACCGCCTCCATCCTCCTCCTCCCCCTGCGCCGCCTCTGCTCCGTCCCTCCCCACGCGGTAGGCGACGCCGGCACCGGAAGCAGCTCCCAGCCGTCGCCGGTGATGGACGCGCAGTTCGAGTCCTTCCGCGCGCAGCTCGACGAGTCCTCCACGCTCCGCGACCGCATCCGCGCCGTCGTCTCCGAGGTCGAGTCCGCCTCCCGCGTCGCCTCCGCCGCGCTCCTCCTCGTGCACCAGCCCGTCCCCCTCGCAGATGTGCTCGGGAAGGCGAAGGCGCAGGTGGAGGTGATCAAGGGGCTCTACTCGCGGCTCGCCGAGATCCTCAAGGAGTGCCCGGGCCAGTACTACAGGTACCACGGCGATTGGAGGAGCGAGACGCAGGCGGTGGTGTCGATGCTCGCCTTCATGCACTGGCTTGAGACCGGCGGCCTCCTCATGCACGCCGAGGCCCAGGAGAAGCTAGGATTGAGCTCCGGGGAGTTTGGCCTGGATGTTGAAGATTACCTTACTGGATTGTGCTTCATGTCCAACGATTTCCCGAGATATGTAGTGAACCGTGTCACTGCTGGAGACTATGACTGTCCAAGAAAGGTGTTGTCATTTCTGACAGACCTTCATGCTTCATTTAGGATGCTGAACCTGCGCAATGACTTTCTACGTAAGAAGTTTGATGGGATGAAGTATGATTTGAGGAGGGTAGAGGAGGTGTATTATGATGTGAAGATTCGAGGACTTGTACCAGGGGAGTCCAAACAAGAGGCAGCTTAGCAAAGACTGTCGTTCCTCACCGAGTTGTTTGGATCCGTCACGCGTTTAGCAAGATCCGTCACTTGTCTAAACTGTGCTAGTTCCTGTTGGAGTCATTTGGATTCCTCTAATATCGACTGGGCTGGCCTATGCTGCCAAATTTACCCGAACCCTTCTAGAGTAGGCATGTGGCAAATATATTCAGATC]

[+] EMBL AK063397             [GCCACCGCCGCGCTCCGACTCCGAGCCGCCTTCCTCTCCCCTCCTCCTCCTCCCGCCGCCGCCGCCGCCTCCGCAGCCGCAGCTTCGAGGCTCCTCCCTCGCCGGCCCACCGCCTCCATCCTCCTCCTCCCCCTGCGCCGCCTCTGCTCCGTCCCTCCCCACGCGGTAGGCGACGCCGGCACCGGAAGCAGCTCCCAGCCGTCGCCGGTGATGGACGCGCAGTTCGAGTCCTTCCGCGCGCAGCTCGACGAGTCCTCCACGCTCCGCGACCGCATCCGCGCCGTCGTCTCCGAGGTCGAGTCCGCCTCCCGCGTCGCCTCCGCCGCGCTCCTCCTCGTGCACCAGCCCGTCCCCCTCGCAGATGTGCTCGGGAAGGCGAAGGCGCAGGTGGAGGTGATCAAGGGGCTCTACTCGCGGCTCGCCGAGATCCTCAAGGAGTGCCCGGGCCAGTACTACAGGTACCACGGCGATTGGAGGAGCGAGACGCAGGCGGTGGTGTCGATGCTCGCCTTCATGCACTGGCTTGAGACCGGCGGCCTCCTCATGCACGCCGAGGCCCAGGAGAAGCTAGGATTGAGCTCCGGGGAGTTTGGCCTGGATGTTGAAGATTACCTTACTGGATTGTGCTTCATGTCCAACGATTTCCCGAGATATGTAGTGAACCGTGTCACTGCTGGAGACTATGACTGTCCAAGAAAGGTGTTGTCATTTCTGACAGACCTTCATGCTTCATTTAGGATGCTGAACCTGCGCAATGACTTTCTACGTAAGAAGTTTGATGGGATGAAGTATGATTTGAGGAGGGTAGAGGAGGTGTATTATGATGTGAAGATTCGAGGACTTGTACCAGGGGAGTCCAAACAAGAGGCAGCTTAGCAAAGACTGTCGTTCCTCACCGAGTTGTTTGGATCCGTCACGCGTTTAGCAAGATCCGTCACTTGTCTAAACTGTGCTAGTTCCTGTTGGAGTCATTTGGATTCCTCTAATATCGACTGGGCTGGCCTATGCTGCCAAATTTACCCGAACCCTTCTAGAGTAGGCATGTGGCAAATATATTCAGATC]


>consensus_4484#0 GCCACCGCCGCGCTCCGACTCCGAGCCGCCTTCCTCTCCCCTCCTCCTCCTCCCGCCGCC GCCGCCGCCTCCGCAGCCGCAGCTTCGAGGCTCCTCCCTCGCCGGCCCACCGCCTCCATC CTCCTCCTCCCCCTGCGCCGCCTCTGCTCCGTCCCTCCCCACGCGGTAGGCGACGCCGGC ACCGGAAGCAGCTCCCAGCCGTCGCCGGTGATGGACGCGCAGTTCGAGTCCTTCCGCGCG CAGCTCGACGAGTCCTCCACGCTCCGCGACCGCATCCGCGCCGTCGTCTCCGAGGTCGAG TCCGCCTCCCGCGTCGCCTCCGCCGCGCTCCTCCTCGTGCACCAGCCCGTCCCCCTCGCA GATGTGCTCGGGAAGGCGAAGGCGCAGGTGGAGGTGATCAAGGGGCTCTACTCGCGGCTC GCCGAGATCCTCAAGGAGTGCCCGGGCCAGTACTACAGGTACCACGGCGATTGGAGGAGC GAGACGCAGGCGGTGGTGTCGATGCTCGCCTTCATGCACTGGCTTGAGACCGGCGGCCTC CTCATGCACGCCGAGGCCCAGGAGAAGCTAGGATTGAGCTCCGGGGAGTTTGGCCTGGAT GTTGAAGATTACCTTACTGGATTGTGCTTCATGTCCAACGATTTCCCGAGATATGTAGTG AACCGTGTCACTGCTGGAGACTATGACTGTCCAAGAAAGGTGTTGTCATTTCTGACAGAC CTTCATGCTTCATTTAGGATGCTGAACCTGCGCAATGACTTTCTACGTAAGAAGTTTGAT GGGATGAAGTATGATTTGAGGAGGGTAGAGGAGGTGTATTATGATGTGAAGATTCGAGGA CTTGTACCAGGGGAGTCCAAACAAGAGGCAGCTTAGCAAAGACTGTCGTTCCTCACCGAG TTGTTTGGATCCGTCACGCGTTTAGCAAGATCCGTCACTTGTCTAAACTGTGCTAGTTCC TGTTGGAGTCATTTGGATTCCTCTAATATCGACTGGGCTGGCCTATGCTGCCAAATTTAC CCGAACCCTTCTAGAGTAGGCATGTGGCAAATATATTCAGATC



consensusID : consensus_4484#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 608
fasta sequence
                              [GATGCTCACCTTCATGCACTGGCTTGAGACCGGCGGCCTCCTCATGCACGCCGAGGCCCAGGAGAAGCTAGGATTGAGCTCCGGGGAGTTTGGTCTGGATGTTGAAGATTACCTTACTGGACTGTGCTTCATGTCCAACGATTTCCCGAGATATGTAGTGAATCGTGTCACTGCTGGAGACTATGACTGTCCAAGAAAGGTGTTGACATTTCTGACAGACCTTCATGCTTCATTTAGGATGCTGAACCTGCGCAATGACTTTCTGCGTAAGAAGTTTGATGGGATGAAGTATGATTTGAGGAGGGTAGAGGAGGTGTATTATGATGTGAAGATTCGAGGACTTGTACCAGGGGAGTCCAAACAAGAGGCAGCTTAGCAAGACTGTCGTTCCTCACCGAGTGGTTTGGATCCGTCATGCGTTTAGCAAGATCCGTCACTTGTTCTCCTGTCTCCTGTCTAAACTGTGCTAGTTCCTGTTGGAGTCATTTAGCTTCCTCTAATATCGACTGGGCTGGCCTATGCTGCCAAATTTACCCGAACCCTTCTAAAGTAGGCATGTGGCAAATATATTCAGATCTGTTCTAATGAAAATGATTGATCTGGACTAA]

[+] EMBL CA767151             [GATGCTCACCTTCATGCACTGGCTTGAGACCGGCGGCCTCCTCATGCACGCCGAGGCCCAGGAGAAGCTAGGATTGAGCTCCGGGGAGTTTGGTCTGGATGTTGAAGATTACCTTACTGGACTGTGCTTCATGTCCAACGATTTCCCGAGATATGTAGTGAATCGTGTCACTGCTGGAGACTATGACTGTCCAAGAAAGGTGTTGACATTTCTGACAGACCTTCATGCTTCATTTAGGATGCTGAACCTGCGCAATGACTTTCTGCGTAAGAAGTTTGATGGGATGAAGTATGATTTGAGGAGGGTAGAGGAGGTGTATTATGATGTGAAGATTCGAGGACTTGTACCAGGGGAGTCCAAACAAGAGGCAGCTTAGCAAGACTGTCGTTCCTCACCGAGTGGTTTGGATCCGTCATGCGTTTAGCAAGATCCGTCACTTGTTCTCCTGTCTCCTGTCTAAACTGTGCTAGTTCCTGTTGGAGTCATTTAGCTTCCTCTAATATCGACTGGGCTGGCCTATGCTGCCAAATTTACCCGAACCCTTCTAAAGTAGGCATGTGGCAAATATATTCAGATCTGTTCTAATGAAAATGATTGATCTGGACT  ]
[-] EMBL CA305788             [                                                                                                                                                                                                                                                                                                                                                                      AAACAAGAGGCAGCTTAGCAAGACTGTCGTTCCTCACCGAGTGGTTTGGATCCGTCATGCGTTTAGCAAGATCCGTCACTTGTTCTCCTGTCTCCTGTCTAAACTGTGCTAGTTCCTGTTGGAGTCATTTAGCTTCCTCTAATATCGACTGGGCTGGCCTATGCTGCCAAATTTACCCGAACCCTTCTAAAGTAGGCATGTGGCAAATATATTCAGATCTGTTCTAATGAAAATGATTGATCTGGACTAA]


>consensus_4484#1 GATGCTCACCTTCATGCACTGGCTTGAGACCGGCGGCCTCCTCATGCACGCCGAGGCCCA GGAGAAGCTAGGATTGAGCTCCGGGGAGTTTGGTCTGGATGTTGAAGATTACCTTACTGG ACTGTGCTTCATGTCCAACGATTTCCCGAGATATGTAGTGAATCGTGTCACTGCTGGAGA CTATGACTGTCCAAGAAAGGTGTTGACATTTCTGACAGACCTTCATGCTTCATTTAGGAT GCTGAACCTGCGCAATGACTTTCTGCGTAAGAAGTTTGATGGGATGAAGTATGATTTGAG GAGGGTAGAGGAGGTGTATTATGATGTGAAGATTCGAGGACTTGTACCAGGGGAGTCCAA ACAAGAGGCAGCTTAGCAAGACTGTCGTTCCTCACCGAGTGGTTTGGATCCGTCATGCGT TTAGCAAGATCCGTCACTTGTTCTCCTGTCTCCTGTCTAAACTGTGCTAGTTCCTGTTGG AGTCATTTAGCTTCCTCTAATATCGACTGGGCTGGCCTATGCTGCCAAATTTACCCGAAC CCTTCTAAAGTAGGCATGTGGCAAATATATTCAGATCTGTTCTAATGAAAATGATTGATC TGGACTAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4484#0      GCCACCGCCGCGCTCCGACTCCGAGCCGCCTTCCTCTCCCCTCCTCCTCCTCCCGCCGCC 60
consensus_4484#1      ------------------------------------------------------------
                                                                                  

consensus_4484#0      GCCGCCGCCTCCGCAGCCGCAGCTTCGAGGCTCCTCCCTCGCCGGCCCACCGCCTCCATC 120
consensus_4484#1      ------------------------------------------------------------
                                                                                  

consensus_4484#0      CTCCTCCTCCCCCTGCGCCGCCTCTGCTCCGTCCCTCCCCACGCGGTAGGCGACGCCGGC 180
consensus_4484#1      ------------------------------------------------------------
                                                                                  

consensus_4484#0      ACCGGAAGCAGCTCCCAGCCGTCGCCGGTGATGGACGCGCAGTTCGAGTCCTTCCGCGCG 240
consensus_4484#1      ------------------------------------------------------------
                                                                                  

consensus_4484#0      CAGCTCGACGAGTCCTCCACGCTCCGCGACCGCATCCGCGCCGTCGTCTCCGAGGTCGAG 300
consensus_4484#1      ------------------------------------------------------------
                                                                                  

consensus_4484#0      TCCGCCTCCCGCGTCGCCTCCGCCGCGCTCCTCCTCGTGCACCAGCCCGTCCCCCTCGCA 360
consensus_4484#1      ------------------------------------------------------------
                                                                                  

consensus_4484#0      GATGTGCTCGGGAAGGCGAAGGCGCAGGTGGAGGTGATCAAGGGGCTCTACTCGCGGCTC 420
consensus_4484#1      ------------------------------------------------------------
                                                                                  

consensus_4484#0      GCCGAGATCCTCAAGGAGTGCCCGGGCCAGTACTACAGGTACCACGGCGATTGGAGGAGC 480
consensus_4484#1      ------------------------------------------------------------
                                                                                  

consensus_4484#0      GAGACGCAGGCGGTGGTGTCGATGCTCGCCTTCATGCACTGGCTTGAGACCGGCGGCCTC 540
consensus_4484#1      --------------------GATGCTCACCTTCATGCACTGGCTTGAGACCGGCGGCCTC 40
                                          ******* ********************************

consensus_4484#0      CTCATGCACGCCGAGGCCCAGGAGAAGCTAGGATTGAGCTCCGGGGAGTTTGGCCTGGAT 600
consensus_4484#1      CTCATGCACGCCGAGGCCCAGGAGAAGCTAGGATTGAGCTCCGGGGAGTTTGGTCTGGAT 100
                      ***************************************************** ******

consensus_4484#0      GTTGAAGATTACCTTACTGGATTGTGCTTCATGTCCAACGATTTCCCGAGATATGTAGTG 660
consensus_4484#1      GTTGAAGATTACCTTACTGGACTGTGCTTCATGTCCAACGATTTCCCGAGATATGTAGTG 160
                      ********************* **************************************

consensus_4484#0      AACCGTGTCACTGCTGGAGACTATGACTGTCCAAGAAAGGTGTTGTCATTTCTGACAGAC 720
consensus_4484#1      AATCGTGTCACTGCTGGAGACTATGACTGTCCAAGAAAGGTGTTGACATTTCTGACAGAC 220
                      ** ****************************************** **************

consensus_4484#0      CTTCATGCTTCATTTAGGATGCTGAACCTGCGCAATGACTTTCTACGTAAGAAGTTTGAT 780
consensus_4484#1      CTTCATGCTTCATTTAGGATGCTGAACCTGCGCAATGACTTTCTGCGTAAGAAGTTTGAT 280
                      ******************************************** ***************

consensus_4484#0      GGGATGAAGTATGATTTGAGGAGGGTAGAGGAGGTGTATTATGATGTGAAGATTCGAGGA 840
consensus_4484#1      GGGATGAAGTATGATTTGAGGAGGGTAGAGGAGGTGTATTATGATGTGAAGATTCGAGGA 340
                      ************************************************************

consensus_4484#0      CTTGTACCAGGGGAGTCCAAACAAGAGGCAGCTTAGCAAAGACTGTCGTTCCTCACCGAG 900
consensus_4484#1      CTTGTACCAGGGGAGTCCAAACAAGAGGCAGCTTAGCAA-GACTGTCGTTCCTCACCGAG 399
                      *************************************** ********************

consensus_4484#0      TTGTTTGGATCCGTCACGCGTTTAGCAAGATCCGTCACTTGT---------------CTA 945
consensus_4484#1      TGGTTTGGATCCGTCATGCGTTTAGCAAGATCCGTCACTTGTTCTCCTGTCTCCTGTCTA 459
                      * ************** *************************               ***

consensus_4484#0      AACTGTGCTAGTTCCTGTTGGAGTCATTTGGATTCCTCTAATATCGACTGGGCTGGCCTA 1005
consensus_4484#1      AACTGTGCTAGTTCCTGTTGGAGTCATTTAGCTTCCTCTAATATCGACTGGGCTGGCCTA 519
                      ***************************** * ****************************

consensus_4484#0      TGCTGCCAAATTTACCCGAACCCTTCTAGAGTAGGCATGTGGCAAATATATTCAGATC-- 1063
consensus_4484#1      TGCTGCCAAATTTACCCGAACCCTTCTAAAGTAGGCATGTGGCAAATATATTCAGATCTG 579
                      **************************** *****************************  

consensus_4484#0      -----------------------------
consensus_4484#1      TTCTAATGAAAATGATTGATCTGGACTAA 608
                                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)