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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4484#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1063 fasta sequence
[GCCACCGCCGCGCTCCGACTCCGAGCCGCCTTCCTCTCCCCTCCTCCTCCTCCCGCCGCCGCCGCCGCCTCCGCAGCCGCAGCTTCGAGGCTCCTCCCTCGCCGGCCCACCGCCTCCATCCTCCTCCTCCCCCTGCGCCGCCTCTGCTCCGTCCCTCCCCACGCGGTAGGCGACGCCGGCACCGGAAGCAGCTCCCAGCCGTCGCCGGTGATGGACGCGCAGTTCGAGTCCTTCCGCGCGCAGCTCGACGAGTCCTCCACGCTCCGCGACCGCATCCGCGCCGTCGTCTCCGAGGTCGAGTCCGCCTCCCGCGTCGCCTCCGCCGCGCTCCTCCTCGTGCACCAGCCCGTCCCCCTCGCAGATGTGCTCGGGAAGGCGAAGGCGCAGGTGGAGGTGATCAAGGGGCTCTACTCGCGGCTCGCCGAGATCCTCAAGGAGTGCCCGGGCCAGTACTACAGGTACCACGGCGATTGGAGGAGCGAGACGCAGGCGGTGGTGTCGATGCTCGCCTTCATGCACTGGCTTGAGACCGGCGGCCTCCTCATGCACGCCGAGGCCCAGGAGAAGCTAGGATTGAGCTCCGGGGAGTTTGGCCTGGATGTTGAAGATTACCTTACTGGATTGTGCTTCATGTCCAACGATTTCCCGAGATATGTAGTGAACCGTGTCACTGCTGGAGACTATGACTGTCCAAGAAAGGTGTTGTCATTTCTGACAGACCTTCATGCTTCATTTAGGATGCTGAACCTGCGCAATGACTTTCTACGTAAGAAGTTTGATGGGATGAAGTATGATTTGAGGAGGGTAGAGGAGGTGTATTATGATGTGAAGATTCGAGGACTTGTACCAGGGGAGTCCAAACAAGAGGCAGCTTAGCAAAGACTGTCGTTCCTCACCGAGTTGTTTGGATCCGTCACGCGTTTAGCAAGATCCGTCACTTGTCTAAACTGTGCTAGTTCCTGTTGGAGTCATTTGGATTCCTCTAATATCGACTGGGCTGGCCTATGCTGCCAAATTTACCCGAACCCTTCTAGAGTAGGCATGTGGCAAATATATTCAGATC]
[+] EMBL AK063397 [GCCACCGCCGCGCTCCGACTCCGAGCCGCCTTCCTCTCCCCTCCTCCTCCTCCCGCCGCCGCCGCCGCCTCCGCAGCCGCAGCTTCGAGGCTCCTCCCTCGCCGGCCCACCGCCTCCATCCTCCTCCTCCCCCTGCGCCGCCTCTGCTCCGTCCCTCCCCACGCGGTAGGCGACGCCGGCACCGGAAGCAGCTCCCAGCCGTCGCCGGTGATGGACGCGCAGTTCGAGTCCTTCCGCGCGCAGCTCGACGAGTCCTCCACGCTCCGCGACCGCATCCGCGCCGTCGTCTCCGAGGTCGAGTCCGCCTCCCGCGTCGCCTCCGCCGCGCTCCTCCTCGTGCACCAGCCCGTCCCCCTCGCAGATGTGCTCGGGAAGGCGAAGGCGCAGGTGGAGGTGATCAAGGGGCTCTACTCGCGGCTCGCCGAGATCCTCAAGGAGTGCCCGGGCCAGTACTACAGGTACCACGGCGATTGGAGGAGCGAGACGCAGGCGGTGGTGTCGATGCTCGCCTTCATGCACTGGCTTGAGACCGGCGGCCTCCTCATGCACGCCGAGGCCCAGGAGAAGCTAGGATTGAGCTCCGGGGAGTTTGGCCTGGATGTTGAAGATTACCTTACTGGATTGTGCTTCATGTCCAACGATTTCCCGAGATATGTAGTGAACCGTGTCACTGCTGGAGACTATGACTGTCCAAGAAAGGTGTTGTCATTTCTGACAGACCTTCATGCTTCATTTAGGATGCTGAACCTGCGCAATGACTTTCTACGTAAGAAGTTTGATGGGATGAAGTATGATTTGAGGAGGGTAGAGGAGGTGTATTATGATGTGAAGATTCGAGGACTTGTACCAGGGGAGTCCAAACAAGAGGCAGCTTAGCAAAGACTGTCGTTCCTCACCGAGTTGTTTGGATCCGTCACGCGTTTAGCAAGATCCGTCACTTGTCTAAACTGTGCTAGTTCCTGTTGGAGTCATTTGGATTCCTCTAATATCGACTGGGCTGGCCTATGCTGCCAAATTTACCCGAACCCTTCTAGAGTAGGCATGTGGCAAATATATTCAGATC]
consensusID : consensus_4484#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 608 fasta sequence
[GATGCTCACCTTCATGCACTGGCTTGAGACCGGCGGCCTCCTCATGCACGCCGAGGCCCAGGAGAAGCTAGGATTGAGCTCCGGGGAGTTTGGTCTGGATGTTGAAGATTACCTTACTGGACTGTGCTTCATGTCCAACGATTTCCCGAGATATGTAGTGAATCGTGTCACTGCTGGAGACTATGACTGTCCAAGAAAGGTGTTGACATTTCTGACAGACCTTCATGCTTCATTTAGGATGCTGAACCTGCGCAATGACTTTCTGCGTAAGAAGTTTGATGGGATGAAGTATGATTTGAGGAGGGTAGAGGAGGTGTATTATGATGTGAAGATTCGAGGACTTGTACCAGGGGAGTCCAAACAAGAGGCAGCTTAGCAAGACTGTCGTTCCTCACCGAGTGGTTTGGATCCGTCATGCGTTTAGCAAGATCCGTCACTTGTTCTCCTGTCTCCTGTCTAAACTGTGCTAGTTCCTGTTGGAGTCATTTAGCTTCCTCTAATATCGACTGGGCTGGCCTATGCTGCCAAATTTACCCGAACCCTTCTAAAGTAGGCATGTGGCAAATATATTCAGATCTGTTCTAATGAAAATGATTGATCTGGACTAA]
[+] EMBL CA767151 [GATGCTCACCTTCATGCACTGGCTTGAGACCGGCGGCCTCCTCATGCACGCCGAGGCCCAGGAGAAGCTAGGATTGAGCTCCGGGGAGTTTGGTCTGGATGTTGAAGATTACCTTACTGGACTGTGCTTCATGTCCAACGATTTCCCGAGATATGTAGTGAATCGTGTCACTGCTGGAGACTATGACTGTCCAAGAAAGGTGTTGACATTTCTGACAGACCTTCATGCTTCATTTAGGATGCTGAACCTGCGCAATGACTTTCTGCGTAAGAAGTTTGATGGGATGAAGTATGATTTGAGGAGGGTAGAGGAGGTGTATTATGATGTGAAGATTCGAGGACTTGTACCAGGGGAGTCCAAACAAGAGGCAGCTTAGCAAGACTGTCGTTCCTCACCGAGTGGTTTGGATCCGTCATGCGTTTAGCAAGATCCGTCACTTGTTCTCCTGTCTCCTGTCTAAACTGTGCTAGTTCCTGTTGGAGTCATTTAGCTTCCTCTAATATCGACTGGGCTGGCCTATGCTGCCAAATTTACCCGAACCCTTCTAAAGTAGGCATGTGGCAAATATATTCAGATCTGTTCTAATGAAAATGATTGATCTGGACT ]
[-] EMBL CA305788 [ AAACAAGAGGCAGCTTAGCAAGACTGTCGTTCCTCACCGAGTGGTTTGGATCCGTCATGCGTTTAGCAAGATCCGTCACTTGTTCTCCTGTCTCCTGTCTAAACTGTGCTAGTTCCTGTTGGAGTCATTTAGCTTCCTCTAATATCGACTGGGCTGGCCTATGCTGCCAAATTTACCCGAACCCTTCTAAAGTAGGCATGTGGCAAATATATTCAGATCTGTTCTAATGAAAATGATTGATCTGGACTAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4484#0 GCCACCGCCGCGCTCCGACTCCGAGCCGCCTTCCTCTCCCCTCCTCCTCCTCCCGCCGCC 60
consensus_4484#1 ------------------------------------------------------------
consensus_4484#0 GCCGCCGCCTCCGCAGCCGCAGCTTCGAGGCTCCTCCCTCGCCGGCCCACCGCCTCCATC 120
consensus_4484#1 ------------------------------------------------------------
consensus_4484#0 CTCCTCCTCCCCCTGCGCCGCCTCTGCTCCGTCCCTCCCCACGCGGTAGGCGACGCCGGC 180
consensus_4484#1 ------------------------------------------------------------
consensus_4484#0 ACCGGAAGCAGCTCCCAGCCGTCGCCGGTGATGGACGCGCAGTTCGAGTCCTTCCGCGCG 240
consensus_4484#1 ------------------------------------------------------------
consensus_4484#0 CAGCTCGACGAGTCCTCCACGCTCCGCGACCGCATCCGCGCCGTCGTCTCCGAGGTCGAG 300
consensus_4484#1 ------------------------------------------------------------
consensus_4484#0 TCCGCCTCCCGCGTCGCCTCCGCCGCGCTCCTCCTCGTGCACCAGCCCGTCCCCCTCGCA 360
consensus_4484#1 ------------------------------------------------------------
consensus_4484#0 GATGTGCTCGGGAAGGCGAAGGCGCAGGTGGAGGTGATCAAGGGGCTCTACTCGCGGCTC 420
consensus_4484#1 ------------------------------------------------------------
consensus_4484#0 GCCGAGATCCTCAAGGAGTGCCCGGGCCAGTACTACAGGTACCACGGCGATTGGAGGAGC 480
consensus_4484#1 ------------------------------------------------------------
consensus_4484#0 GAGACGCAGGCGGTGGTGTCGATGCTCGCCTTCATGCACTGGCTTGAGACCGGCGGCCTC 540
consensus_4484#1 --------------------GATGCTCACCTTCATGCACTGGCTTGAGACCGGCGGCCTC 40
******* ********************************
consensus_4484#0 CTCATGCACGCCGAGGCCCAGGAGAAGCTAGGATTGAGCTCCGGGGAGTTTGGCCTGGAT 600
consensus_4484#1 CTCATGCACGCCGAGGCCCAGGAGAAGCTAGGATTGAGCTCCGGGGAGTTTGGTCTGGAT 100
***************************************************** ******
consensus_4484#0 GTTGAAGATTACCTTACTGGATTGTGCTTCATGTCCAACGATTTCCCGAGATATGTAGTG 660
consensus_4484#1 GTTGAAGATTACCTTACTGGACTGTGCTTCATGTCCAACGATTTCCCGAGATATGTAGTG 160
********************* **************************************
consensus_4484#0 AACCGTGTCACTGCTGGAGACTATGACTGTCCAAGAAAGGTGTTGTCATTTCTGACAGAC 720
consensus_4484#1 AATCGTGTCACTGCTGGAGACTATGACTGTCCAAGAAAGGTGTTGACATTTCTGACAGAC 220
** ****************************************** **************
consensus_4484#0 CTTCATGCTTCATTTAGGATGCTGAACCTGCGCAATGACTTTCTACGTAAGAAGTTTGAT 780
consensus_4484#1 CTTCATGCTTCATTTAGGATGCTGAACCTGCGCAATGACTTTCTGCGTAAGAAGTTTGAT 280
******************************************** ***************
consensus_4484#0 GGGATGAAGTATGATTTGAGGAGGGTAGAGGAGGTGTATTATGATGTGAAGATTCGAGGA 840
consensus_4484#1 GGGATGAAGTATGATTTGAGGAGGGTAGAGGAGGTGTATTATGATGTGAAGATTCGAGGA 340
************************************************************
consensus_4484#0 CTTGTACCAGGGGAGTCCAAACAAGAGGCAGCTTAGCAAAGACTGTCGTTCCTCACCGAG 900
consensus_4484#1 CTTGTACCAGGGGAGTCCAAACAAGAGGCAGCTTAGCAA-GACTGTCGTTCCTCACCGAG 399
*************************************** ********************
consensus_4484#0 TTGTTTGGATCCGTCACGCGTTTAGCAAGATCCGTCACTTGT---------------CTA 945
consensus_4484#1 TGGTTTGGATCCGTCATGCGTTTAGCAAGATCCGTCACTTGTTCTCCTGTCTCCTGTCTA 459
* ************** ************************* ***
consensus_4484#0 AACTGTGCTAGTTCCTGTTGGAGTCATTTGGATTCCTCTAATATCGACTGGGCTGGCCTA 1005
consensus_4484#1 AACTGTGCTAGTTCCTGTTGGAGTCATTTAGCTTCCTCTAATATCGACTGGGCTGGCCTA 519
***************************** * ****************************
consensus_4484#0 TGCTGCCAAATTTACCCGAACCCTTCTAGAGTAGGCATGTGGCAAATATATTCAGATC-- 1063
consensus_4484#1 TGCTGCCAAATTTACCCGAACCCTTCTAAAGTAGGCATGTGGCAAATATATTCAGATCTG 579
**************************** *****************************
consensus_4484#0 -----------------------------
consensus_4484#1 TTCTAATGAAAATGATTGATCTGGACTAA 608
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||