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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4488#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1014 fasta sequence
[TCCTTTTTTTTGTAGTTATCGTATTGCATTCCAATGTATTACCCATGAATTTGAGGTAAATATGAACCATTACAGTAATAATAATAATGTACGTGGCTTACATGCTGCAACTGTTTATGATGTTGGCAAACATAATTTGGTAGATGCGTTGTATGTGAGGCGTCTCTTAGCTCTTACAACAGTATTCGGCAGGGAGATCAGCCATTCCAGGAAGAACAGTATTTGCACAGAATACAATCTAACGAAAGAGGGAAAATTTAGCTACTGCACTGGCAAAAATATGCAGAGAACTTGGTTTGAACTTATCTTTCACTGAGGTGATATCATGATAGTATTATCCTACCACAGTTAAGGAGCACGCGATAAATTTGAGGGCACGGGATTGCAACGTCCAGCTAAGTTGCATTGTAGTCATCGAATGAGGATGATTTGTGATCAAGGGGGACTACAAAGGGATTGAAATGCAGGTGAGCAGATTGTCCCCCAGAAGCTCTTGGCACAAGTCATAAGTCATTGTCCACTGTTTCCTAGGGTTCATATCTCCAATCCAGAACTCAACAGCCACCGGATGAACAACAGGTTTCAAGGTGCGTCGAGCTGTACAGTCCTCACCTTACGCAACAGGACACCAAGCCTGTGTATGTGCATCAAGCTGACAGCTAATTAACCTCATCAAC-GGCCAACAGGATGGCCTAGTAAGCAATTCCGAACCCGAATGATACCATCATAGCAGAAACACTATCTTTAAGCAAATGATTGCCATGTTTGTCCACAACGAACAGCCTCTTGGCGAACTCTCCTTTTCTTATCATCAAGAGCCTTGATTGCAGCCTTGTAGGATCTGTGGTCGCATGCGATAAATNTTTGAGTGAGGAAGACTAGACATGGCAACTAAACATTGTAAGGCTGTCTCTCGAACAACCATCATGTGAGGATACGAAACGAGCTGNGTAAGGACACTGACAATGATGTGGATGTTCTCCACAATGCATTCTTTTGCCTTTTTNATNCATC]
[+] EMBL CB635261 [TCCTTTTTTTTGTAGTTATCGTATTGCATTCCAATGTATTACCCATGAATTTGAGGTAAATATGAACCATTACAGTAATAATAATAATGTACGTGGCTTACATGCTGCAACTGTTTATGATGTTGGCAAACATAATTTGGTAGATGCGTTGTATGTGAGGCGTCTCTTAGCTCTTACAACAGTATTCGGCAGGGAGATCAGCCATTCCAGGAAGAACAGTATTTGCACAGAATACAATCTAACGAAAGAGGGAAAATTTAGCTACTGCACTGGCAAAAATATGCAGAGAACTTGGTTTGAACTTATCTTTCACTGAGGTGATATCATGATAGTATTATCCTACCACAGTTAAGGAGCACGCGATAAATTTGAGGGCACGGGATTGCAACGTCCAGCTAAGTTGCATTGTAGTCATCGAATGAGGATGATTTGTGATCAAGGGGGACTACAAAGGGATTGAAATGCAGGTGAGCAGATTGTCCCCCAGAAGCTCTTGGCACAAGTCATAAGTCATTGTCCACTGTTTCCTAGGGTTCATATCTCCAATCCAGAACTCAACAGCCACCGGATGAACAACAGGTTTCAAGGTGCGTCGAGCTGTACAGTCCTCACCTTACGCAACAGGACACCAAGCCTGTGTATGTGCATCAAGCTGACAGCTAATTAACCTCATCAAC GGCCAACAGGATGGCCTAGTAAGCAATTCCGAACCCGAATGATACCATCATAGCAGAAACACTATCTTTAAGCAAATGATTGCCATGTTTGTCCACAACGAA ]
[+] EMBL CA305742 [ ACCTTACGCAACAGGACACCAAGCCTGTGTATGTGCATCAAGCTGACAGCTAATTAACCTCATCAACTGGCCAACAGGATGGCCTAGTAAGCAATTCCGAACCCGAATGATACCATCATAGCAGAAACACTATCTTTAAGCACATGATTGCCATGTTTGTCGACAACGAACAGCCTCTTGGCGAACTCTCCTTTTCTTATCATCAAGAGCCTTGATTGCAGCCTTGTAGGATCTGTGGTCGCATGCGATAAATNTTTGAGTGAGGAAGACTAGACATGGCAACTAAACATTGTAAGGCTGTCTCTCGAACAACCATCATGTGAGGATACGAAACGAGCTGNGTAAGGACACTGACAATGATGTGGATGTTCTCCACAATGCATTCTTTTGCCTTTTTNATNCATC]
consensusID : consensus_4488#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 903 fasta sequence
[CCGGCGGCAGCAGCTTCCCGCCGCCGCCGCCGGCGGTAGGCGTCGCCGGCGTGGCGTGCACGTACATGATCGAGAGGCCGGAGCTCCGGTGGGCGTTCATCCGCAAGGTGTACGCGATCGTGGCGACGCAGCTGGTGGTGACCGTCGCCATCGCCGCCGCCGTCTACTCCGTCCCGGCCATCCGCCGCTTCTTCCTCGCCCGCACGCCGGCGTCGCTCGCCGCCTTCGTGCTCGTCATCGTCGCCCCCCTCATCGTTATGCTGCCGACGATGTTTCTCCGTAAGAAGCATCCGATCAACCTCATCCTTCTAGCATTGTTCACCATTTGCATGAGCTGCGCCATTGGCCTGGGCTGCCTCTCTTCCAAAGCCGGCATTGCTATAATCGAAGCGGCATCCCTAACGTTCGGGCTGGTGTTCGGCCTGACGCTCTACACATTCTGGGCGGCCAAGAGAGGCCATGACTTCAGCTTCCTCCGCCCCTTCTTGGTCGCGGCCTTCCTCGTCCTCGTCCTCTACGGTCTCATCCAGATGTTGGTGCCAACGGGGAAAGTGGCGACGACGGTGTACGGGTGCGTGGCGGCGCTGGTGTTCTCCGGCTTCATCATCTACGACACGGACAATCTGATCAAGAGGCACGCCTACGATGAGTACGTCACGGCTGCCATCTCGCTCTACCTTGACACCGTCAACATCTTCATTGCCATTTTCACTGCACTCGACGCTTCAGATTCATAGAATATATCTCTAGAGTTTGTTACTAGTAGTTGTTACCCTGCTGAAAAGCAGCAGCCAGTAACTATAACTCTTTATAGGGAAAACATATGTAGTTATCGTATTGCATTCCAATGTATTAGCCATGAATTTGAGGTAAATATGAACCATTACAGTAATAATAATAATG]
[+] EMBL AK070925 [CCGGCGGCAGCAGCTTCCCGCCGCCGCCGCCGGCGGTAGGCGTCGCCGGCGTGGCGTGCACGTACATGATCGAGAGGCCGGAGCTCCGGTGGGCGTTCATCCGCAAGGTGTACGCGATCGTGGCGACGCAGCTGGTGGTGACCGTCGCCATCGCCGCCGCCGTCTACTCCGTCCCGGCCATCCGCCGCTTCTTCCTCGCCCGCACGCCGGCGTCGCTCGCCGCCTTCGTGCTCGTCATCGTCGCCCCCCTCATCGTTATGCTGCCGACGATGTTTCTCCGTAAGAAGCATCCGATCAACCTCATCCTTCTAGCATTGTTCACCATTTGCATGAGCTGCGCCATTGGCCTGGGCTGCCTCTCTTCCAAAGCCGGCATTGCTATAATCGAAGCGGCATCCCTAACGTTCGGGCTGGTGTTCGGCCTGACGCTCTACACATTCTGGGCGGCCAAGAGAGGCCATGACTTCAGCTTCCTCCGCCCCTTCTTGGTCGCGGCCTTCCTCGTCCTCGTCCTCTACGGTCTCATCCAGATGTTGGTGCCAACGGGGAAAGTGGCGACGACGGTGTACGGGTGCGTGGCGGCGCTGGTGTTCTCCGGCTTCATCATCTACGACACGGACAATCTGATCAAGAGGCACGCCTACGATGAGTACGTCACGGCTGCCATCTCGCTCTACCTTGACACCGTCAACATCTTCATTGCCATTTTCACTGCACTCGACGCTTCAGATTCATAGAATATATCTCTAGAGTTTGTTACTAGTAGTTGTTACCCTGCTGAAAAGCAGCAGCCAGTAACTATAACTCTTTATAGGGAAAACATATGTAGTTATCGTATTGCATTCCAATGTATTAGCCATGAATTTGAGGTAAATATGAACCATTACAGTAATAATAATAATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4488#0 TCCTTTTTTTTGTAGTTATCGTATTGCATTCCAATGTATTACCCATGAATTTGAGGTAAA 60
consensus_4488#1 -------------------------------------------------CCGGCGGCAGC 11
* ** *
consensus_4488#0 TATGAACCATTACAGTAATAATAATAATGTACGTGGCTTACATGCTGCAACTGTTTATGA 120
consensus_4488#1 AGCTTCCCGCCGCCGC--CGCCGGCGGTAGGCGTCGCCGGCGTGGCGTGCACGTACATGA 69
** * * * *** ** * ** * ** ****
consensus_4488#0 TGTTGGCAAACATAATTTGGTAGATGCGTTGTATGTGAGGCGTCTCTTAGCTCTTACAAC 180
consensus_4488#1 TCGAGAGGCCGGAGCTCCGGTGGGCGT-TCATCCGCAAGGTGTA-CGCGATCGTGGCGAC 127
* * * *** * * * * * *** ** * * * **
consensus_4488#0 AGTATTCGGCAGGGAGATCAGCCATTCCAGGAAGAACAGTATTTGCACAGAATACAATCT 240
consensus_4488#1 -GCAGCTGGTGGTGACCGTCGCCATCGCCGC-----CGCCGTCTACTC------CGTCCC 175
* * ** * ** ***** * * * * * * * * *
consensus_4488#0 AACGAAAGAGGGAAAATTTAGCTACTGCACTGGCAAAAATATGCAGAGAACTTG-GTTTG 299
consensus_4488#1 GGCCATCCGCCGCTTCTTCCTCGCCCGCAC-GCCGGCGTCGCTCGCCGCCTTCGTGCTCG 234
* * * ** * * **** * * * * * * * * *
consensus_4488#0 AACTTATCTTTCACTGAGGTGATATCATGATAGTATTATCCTACCACAGTTAAGGAGCAC 359
consensus_4488#1 TCATCGTCGCCCCCCTCATCGTTATGCTGCCGACGATGTTTCTCCG----TAAGAAGCAT 290
* ** * * * *** ** * * ** **** ****
consensus_4488#0 GCGATAAATTTGAGGGCACGGG-ATTG--CAACGTCCAGCTAAGTTGCATTGTAGTCATC 416
consensus_4488#1 CCGATCAACCTCATCCTTCTAGCATTGTTCACCATTTGCATGAGCTGCGCCATTGGCCTG 350
**** ** * * * * **** ** * * * ** *** * * * *
consensus_4488#0 GAATGAGGATGATTTGTGATCAAGGGGGACTACAAAGGGATTGAAAT-----GCAGGTGA 471
consensus_4488#1 GGCTGCCTCTC-TTCCAAAGCCGGCATTGCTATAATCGAAGCGGCATCCCTAACGTTCGG 409
* ** * ** * * * *** ** * * * ** * *
consensus_4488#0 GCAGATTGTCCCCCAGAAGCTCTTGGCACAAGTCATAAGTCATTGTCCACTGTTTCCTAG 531
consensus_4488#1 GCTGGTGTTCGGCCTGACGCTCTACACATTC-TGGGCGGCCAAGAGAGGCCATGACTTCA 468
** * * ** ** ** ***** ** * * ** * * * *
consensus_4488#0 GGTTCATATCTCCAATCCAGAACTCAACAGCCACCGGATGAACAACAGGTTTCAAGGTG- 590
consensus_4488#1 GCTTCCTCCGCCCCTTCTTGGTCGCGGCCTTCCTCGT-----CCTCGTCCTCTACGGTCT 523
* *** * ** ** * * * * * ** * * * * ***
consensus_4488#0 CGTCGAGCTGTACAGTCCTCACCTTACGCAACAGGACACCAAGCCTGTGTATGTGCATCA 650
consensus_4488#1 CATCCAGATGT-TGGTGCCAAC---GGGGAAAGTGGCGACGACGGTGTACGGGTGCGTGG 579
* ** ** *** ** * ** * ** * * * * *** **** *
consensus_4488#0 AGCTGACAGC--TAATTAACCTCATCAACGGCCAACAGGATGGCCTAGTAAGCAATTCCG 708
consensus_4488#1 CGGCGCTGGTGTTCTCCGGCTTCATCATCTACGACACGGACAATCTGATCAAGAGGCACG 639
* * * * * ****** * * * *** ** * * * **
consensus_4488#0 AACCCGAATGATACCATCATAGCAGAAACACTATCTTTAAGCAAATGATTGCCATGTTTG 768
consensus_4488#1 CCTACGA-TGAGTACGTCACGGC-----TGCCATCTC-------------GCTCTACCTT 680
*** *** * *** ** * **** ** * *
consensus_4488#0 TCCACAACGAACAGCCTCTTGGCGAACTCTCCTTTTCTTATCATCAAGAGCCTTGATTGC 828
consensus_4488#1 GACACCGTCAACATCTTCATTGCCATTTTCACTGCACTCGACGCTTCAGATTCATAGAAT 740
*** **** * ** * ** * * ** ** * *
consensus_4488#0 AGCCTTGTAGGATCTGTGGTCGCATGCGATAAATNTTTGAGTGAGGAAGACTAGACATGG 888
consensus_4488#1 ATATCTCTAGAGTTTG---TTACTAGTAGTTGTTACCCTGCTGAAAAGCAGCAGCCA--G 795
* * *** * ** * * * * * *** * * ** ** *
consensus_4488#0 CAACTA-AACATTGTAAGGCTGTCTCTCGAACAACCATCATGTGAGGATACGAAACGAGC 947
consensus_4488#1 TAACTATAACTCTTTATAGGGAAAACATATGTAGTTATCGTATTGCATTCC--AATGTAT 853
***** *** * ** * * * *** * * * * ** *
consensus_4488#0 TGNGTAAGGACACTGACAATGATGTGGATGTTCTCCACAATGCATTCTTTTGCCTTTTTN 1007
consensus_4488#1 TAGCCATGAAT-TTGAGGTAAATATGAACCATTACAGTAATA-ATAATAATG-------- 903
* * * * *** ** ** * * * *** ** * **
consensus_4488#0 ATNCATC 1014
consensus_4488#1 -------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||