cluster # 4489

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Oryza sativa
cluster # 4489 cluster # 4489 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4489#0 length = 793 sequences # 2

consensus_4489#1 length = 480 sequences # 1

consensusID : consensus_4489#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 793
fasta sequence

                              [CAGTAGGGTTTTGTTTAGTTTTCACTTTACCTTTTCCCGCACGGCGACGAAGAGGAGGAAGGAGCGGCGCCACCACCACCACCACCACCCCACGCCATGGCGAACCCAGCGCAGGGGCCTCTGAGAGCGAGGACGAAGCCCGCGGGGAGGAGGGGCGGCGCTCCGCCGCCCGCCGCGGAGGATCCGTCCCGGGCGGCGGCGGCGGCGGCGAGGCGCTCGGTGCGGAAGTGGAGCACGTGGACGATGAAGACGGCGAAGGTGGCGGCGTACTACGGCTTCATCCCCCTCGTCATCGTCATCGGCATGAACTCCGACCCC-AGCCCTCCATCGGACAGCTCCTCTCCCCGCTGTGATTCCGCTTCGACCCCCACTCGACTCTGCCTCCGCTTTTCTTGGGCTCTGCTACATGATCGTACTTACTGCGTAGTTGATCTGCAATTAGTACTATTTTGCTACTAGTATATTCGCTATGTGTTAGCAATATTCTGCACTGTTAATTTGCTGGGAACTGGGAAGTTAGTACTTGCATCGATCGTCATGTAACCTTTGTGATGAATTTGGTGATGCCTGCGTTTGATTCTGATGCGTGCCAGGCATGTCGAATACCATGGTTCGGTGCTTGCCTTGCGAGATGCCTCTTGATCTATTATTGTGTGGACCTTGTTCAGGAGAGTGTTTTTGGCCAATAGCTTTGAGCAATTCAAGGGAGTTTCAGTCTTCTTCTGGGTGCCTGTTTAGGCTGGAAATTCCAAAGATGAATACCTGTTTTCTTTACTGTATCTTGAATTCCAGT]

[+] EMBL AK101992             [CAGTAGGGTTTTGTTTAGTTTTCACTTTACCTTTTCCCGCACGGCGACGAAGAGGAGGAAGGAGCGGCGCCACCACCACCACCACCACCCCACGCCATGGCGAACCCAGCGCAGGGGCCTCTGAGAGCGAGGACGAAGCCCGCGGGGAGGAGGGGCGGCGCTCCGCCGCCCGCCGCGGAGGATCCGTCCCGGGCGGCGGCGGCGGCGGCGAGGCGCTCGGTGCGGAAGTGGAGCACGTGGACGATGAAGACGGCGAAGGTGGCGGCGTACTACGGCTTCATCCCCCTCGTCATCGTCATCGGCATGAACTCCGACCCC AGCCCTCCATCGGACAGCTCCTCTCCCCGCTGTGATTCCGCTTCGACCCCCACTCGACTCTGCCTCCGCTTTTCTTGGGCTCTGCTACATGATCGTACTTACTGCGTAGTTGATCTGCAATTAGTACTATTTTGCTACTAGTATATTCGCTATGTGTTAGCAATATTCTGCACTGTTAATTTGCTGGGAACTGGGAAGTTAGTACTTGCATCGATCGTCATGTAACCTTTGTGATGAATTTGGTGATGCCTGCGTTTGATTCTGATGCGTGCCAGGCATGTCGAATACCATGGTTCGGTGCTTGCCTTGCGAGATGCCTCTTGATCTATTATTGTGTGGACCTTGTTCAGGAGAGTGTTTTTGGCCAATAGCTTTGAGCAATTCAAGGGAGTTTCAGTCTTCTTCTGGGTGCCTGTTTAGGCTGGAAATTCCAAAGATGAATACCTGTTTTCTTTACTGTATCTTGAATTCCAGT]
[+] EMBL AU160949             [                                              ACGAAGAGGAGGAAGGAGCGGCGCCACCACCACCACCACCACCCCACGCCATGGCGAACCCAGCGCAGGGGCCTCTGAGAGCGAGGACGAAGCCCGCGGGGAGGAGGGGCGGCGCTCCGCCGCCCGCCGCGGAGGATCCGTCCCGGGCGGCGGCGGCGGCGGCGAGGCGCTCGGTGCGGAAGTGGAGCACGTGGACGATGAAGACGGCGAAGGTGGCGGCGTACTACGGCTTCATCCCCCTCGTCATCGTCATCGGCATGAACTCCGACCCCAAGCCCTCCATCGGACAGCTCCTCTCCCCGCTGTGATTCCGCTTCGACCCCCACTCGACTCTGCCTNCGCTTTTCTTGGGCTCTGCTA                                                                                                                                                                                                                                                                                                                                                                                                    ]




>consensus_4489#0
CAGTAGGGTTTTGTTTAGTTTTCACTTTACCTTTTCCCGCACGGCGACGAAGAGGAGGAA
GGAGCGGCGCCACCACCACCACCACCACCCCACGCCATGGCGAACCCAGCGCAGGGGCCT
CTGAGAGCGAGGACGAAGCCCGCGGGGAGGAGGGGCGGCGCTCCGCCGCCCGCCGCGGAG
GATCCGTCCCGGGCGGCGGCGGCGGCGGCGAGGCGCTCGGTGCGGAAGTGGAGCACGTGG
ACGATGAAGACGGCGAAGGTGGCGGCGTACTACGGCTTCATCCCCCTCGTCATCGTCATC
GGCATGAACTCCGACCCCAGCCCTCCATCGGACAGCTCCTCTCCCCGCTGTGATTCCGCT
TCGACCCCCACTCGACTCTGCCTCCGCTTTTCTTGGGCTCTGCTACATGATCGTACTTAC
TGCGTAGTTGATCTGCAATTAGTACTATTTTGCTACTAGTATATTCGCTATGTGTTAGCA
ATATTCTGCACTGTTAATTTGCTGGGAACTGGGAAGTTAGTACTTGCATCGATCGTCATG
TAACCTTTGTGATGAATTTGGTGATGCCTGCGTTTGATTCTGATGCGTGCCAGGCATGTC
GAATACCATGGTTCGGTGCTTGCCTTGCGAGATGCCTCTTGATCTATTATTGTGTGGACC
TTGTTCAGGAGAGTGTTTTTGGCCAATAGCTTTGAGCAATTCAAGGGAGTTTCAGTCTTC
TTCTGGGTGCCTGTTTAGGCTGGAAATTCCAAAGATGAATACCTGTTTTCTTTACTGTAT
CTTGAATTCCAGT

consensusID : consensus_4489#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 480
fasta sequence

                              [CGCCGCGGAGGATCCGTCCCGGGCGGCGGCGGCGGCGGCGAGGCGCTCGGTGCGGAAGTGGAGCACGTGGACGATGAAGACGGCGAAGGTGGCGGCGTACTACGGCTTCATCCCCCTCGTCATCGTCATCGGCATGAACTCCGACCCCAAGCCCTCCATCGGACAGCTCCTCTCCCCGCTGTGATTCCGCTTCGACCCCCACTCGACTCTGCCTCCGCTTTTCTTGGGCTCTGCTACATGATCGTACTTACTGCGTAGTTGATCTGCAATTAGTACTATTTTGCTACTAGTATATTCGCTATGTGTTAGCAATATTNTGCNCTGTTAATTTGCTGGGAACTGGGAAGTTAGTACTTGCATCGATCGTCATGTAACCTTTGTGATGAATTTGGTGATGCCTGCGTTTGATTNTGATGCGTGCCAGGCATGTCGAATACCATGGTTCGGTGCTTGCCTTGCGAGAAAAAAAAAAAAAAAAAA]

[+] EMBL AU160950             [CGCCGCGGAGGATCCGTCCCGGGCGGCGGCGGCGGCGGCGAGGCGCTCGGTGCGGAAGTGGAGCACGTGGACGATGAAGACGGCGAAGGTGGCGGCGTACTACGGCTTCATCCCCCTCGTCATCGTCATCGGCATGAACTCCGACCCCAAGCCCTCCATCGGACAGCTCCTCTCCCCGCTGTGATTCCGCTTCGACCCCCACTCGACTCTGCCTCCGCTTTTCTTGGGCTCTGCTACATGATCGTACTTACTGCGTAGTTGATCTGCAATTAGTACTATTTTGCTACTAGTATATTCGCTATGTGTTAGCAATATTNTGCNCTGTTAATTTGCTGGGAACTGGGAAGTTAGTACTTGCATCGATCGTCATGTAACCTTTGTGATGAATTTGGTGATGCCTGCGTTTGATTNTGATGCGTGCCAGGCATGTCGAATACCATGGTTCGGTGCTTGCCTTGCGAGAAAAAAAAAAAAAAAAAA]




>consensus_4489#1
CGCCGCGGAGGATCCGTCCCGGGCGGCGGCGGCGGCGGCGAGGCGCTCGGTGCGGAAGTG
GAGCACGTGGACGATGAAGACGGCGAAGGTGGCGGCGTACTACGGCTTCATCCCCCTCGT
CATCGTCATCGGCATGAACTCCGACCCCAAGCCCTCCATCGGACAGCTCCTCTCCCCGCT
GTGATTCCGCTTCGACCCCCACTCGACTCTGCCTCCGCTTTTCTTGGGCTCTGCTACATG
ATCGTACTTACTGCGTAGTTGATCTGCAATTAGTACTATTTTGCTACTAGTATATTCGCT
ATGTGTTAGCAATATTNTGCNCTGTTAATTTGCTGGGAACTGGGAAGTTAGTACTTGCAT
CGATCGTCATGTAACCTTTGTGATGAATTTGGTGATGCCTGCGTTTGATTNTGATGCGTG
CCAGGCATGTCGAATACCATGGTTCGGTGCTTGCCTTGCGAGAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4489#0      CAGTAGGGTTTTGTTTAGTTTTCACTTTACCTTTTCCCGCACGGCGACGAAGAGGAGGAA 60
consensus_4489#1      ------------------------------------------------------------
                                                                                  

consensus_4489#0      GGAGCGGCGCCACCACCACCACCACCACCCCACGCCATGGCGAACCCAGCGCAGGGGCCT 120
consensus_4489#1      ------------------------------------------------------------
                                                                                  

consensus_4489#0      CTGAGAGCGAGGACGAAGCCCGCGGGGAGGAGGGGCGGCGCTCCGCCGCCCGCCGCGGAG 180
consensus_4489#1      --------------------------------------------------CGCCGCGGAG 10
                                                                        **********

consensus_4489#0      GATCCGTCCCGGGCGGCGGCGGCGGCGGCGAGGCGCTCGGTGCGGAAGTGGAGCACGTGG 240
consensus_4489#1      GATCCGTCCCGGGCGGCGGCGGCGGCGGCGAGGCGCTCGGTGCGGAAGTGGAGCACGTGG 70
                      ************************************************************

consensus_4489#0      ACGATGAAGACGGCGAAGGTGGCGGCGTACTACGGCTTCATCCCCCTCGTCATCGTCATC 300
consensus_4489#1      ACGATGAAGACGGCGAAGGTGGCGGCGTACTACGGCTTCATCCCCCTCGTCATCGTCATC 130
                      ************************************************************

consensus_4489#0      GGCATGAACTCCGACCCCA-GCCCTCCATCGGACAGCTCCTCTCCCCGCTGTGATTCCGC 359
consensus_4489#1      GGCATGAACTCCGACCCCAAGCCCTCCATCGGACAGCTCCTCTCCCCGCTGTGATTCCGC 190
                      ******************* ****************************************

consensus_4489#0      TTCGACCCCCACTCGACTCTGCCTCCGCTTTTCTTGGGCTCTGCTACATGATCGTACTTA 419
consensus_4489#1      TTCGACCCCCACTCGACTCTGCCTCCGCTTTTCTTGGGCTCTGCTACATGATCGTACTTA 250
                      ************************************************************

consensus_4489#0      CTGCGTAGTTGATCTGCAATTAGTACTATTTTGCTACTAGTATATTCGCTATGTGTTAGC 479
consensus_4489#1      CTGCGTAGTTGATCTGCAATTAGTACTATTTTGCTACTAGTATATTCGCTATGTGTTAGC 310
                      ************************************************************

consensus_4489#0      AATATTCTGCACTGTTAATTTGCTGGGAACTGGGAAGTTAGTACTTGCATCGATCGTCAT 539
consensus_4489#1      AATATTNTGCNCTGTTAATTTGCTGGGAACTGGGAAGTTAGTACTTGCATCGATCGTCAT 370
                      ****** *** *************************************************

consensus_4489#0      GTAACCTTTGTGATGAATTTGGTGATGCCTGCGTTTGATTCTGATGCGTGCCAGGCATGT 599
consensus_4489#1      GTAACCTTTGTGATGAATTTGGTGATGCCTGCGTTTGATTNTGATGCGTGCCAGGCATGT 430
                      **************************************** *******************

consensus_4489#0      CGAATACCATGGTTCGGTGCTTGCCTTGCGAGATGCCTCTTGATCTATTATTGTGTGGAC 659
consensus_4489#1      CGAATACCATGGTTCGGTGCTTGCCTTGCGAGAAAAAAAAAAAAAAAAAA---------- 480
                      *********************************         *   *  *          

consensus_4489#0      CTTGTTCAGGAGAGTGTTTTTGGCCAATAGCTTTGAGCAATTCAAGGGAGTTTCAGTCTT 719
consensus_4489#1      ------------------------------------------------------------
                                                                                  

consensus_4489#0      CTTCTGGGTGCCTGTTTAGGCTGGAAATTCCAAAGATGAATACCTGTTTTCTTTACTGTA 779
consensus_4489#1      ------------------------------------------------------------
                                                                                  

consensus_4489#0      TCTTGAATTCCAGT 793
consensus_4489#1      --------------