These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4489#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 793 fasta sequence [CAGTAGGGTTTTGTTTAGTTTTCACTTTACCTTTTCCCGCACGGCGACGAAGAGGAGGAAGGAGCGGCGCCACCACCACCACCACCACCCCACGCCATGGCGAACCCAGCGCAGGGGCCTCTGAGAGCGAGGACGAAGCCCGCGGGGAGGAGGGGCGGCGCTCCGCCGCCCGCCGCGGAGGATCCGTCCCGGGCGGCGGCGGCGGCGGCGAGGCGCTCGGTGCGGAAGTGGAGCACGTGGACGATGAAGACGGCGAAGGTGGCGGCGTACTACGGCTTCATCCCCCTCGTCATCGTCATCGGCATGAACTCCGACCCC-AGCCCTCCATCGGACAGCTCCTCTCCCCGCTGTGATTCCGCTTCGACCCCCACTCGACTCTGCCTCCGCTTTTCTTGGGCTCTGCTACATGATCGTACTTACTGCGTAGTTGATCTGCAATTAGTACTATTTTGCTACTAGTATATTCGCTATGTGTTAGCAATATTCTGCACTGTTAATTTGCTGGGAACTGGGAAGTTAGTACTTGCATCGATCGTCATGTAACCTTTGTGATGAATTTGGTGATGCCTGCGTTTGATTCTGATGCGTGCCAGGCATGTCGAATACCATGGTTCGGTGCTTGCCTTGCGAGATGCCTCTTGATCTATTATTGTGTGGACCTTGTTCAGGAGAGTGTTTTTGGCCAATAGCTTTGAGCAATTCAAGGGAGTTTCAGTCTTCTTCTGGGTGCCTGTTTAGGCTGGAAATTCCAAAGATGAATACCTGTTTTCTTTACTGTATCTTGAATTCCAGT] [+] EMBL AK101992 [CAGTAGGGTTTTGTTTAGTTTTCACTTTACCTTTTCCCGCACGGCGACGAAGAGGAGGAAGGAGCGGCGCCACCACCACCACCACCACCCCACGCCATGGCGAACCCAGCGCAGGGGCCTCTGAGAGCGAGGACGAAGCCCGCGGGGAGGAGGGGCGGCGCTCCGCCGCCCGCCGCGGAGGATCCGTCCCGGGCGGCGGCGGCGGCGGCGAGGCGCTCGGTGCGGAAGTGGAGCACGTGGACGATGAAGACGGCGAAGGTGGCGGCGTACTACGGCTTCATCCCCCTCGTCATCGTCATCGGCATGAACTCCGACCCC AGCCCTCCATCGGACAGCTCCTCTCCCCGCTGTGATTCCGCTTCGACCCCCACTCGACTCTGCCTCCGCTTTTCTTGGGCTCTGCTACATGATCGTACTTACTGCGTAGTTGATCTGCAATTAGTACTATTTTGCTACTAGTATATTCGCTATGTGTTAGCAATATTCTGCACTGTTAATTTGCTGGGAACTGGGAAGTTAGTACTTGCATCGATCGTCATGTAACCTTTGTGATGAATTTGGTGATGCCTGCGTTTGATTCTGATGCGTGCCAGGCATGTCGAATACCATGGTTCGGTGCTTGCCTTGCGAGATGCCTCTTGATCTATTATTGTGTGGACCTTGTTCAGGAGAGTGTTTTTGGCCAATAGCTTTGAGCAATTCAAGGGAGTTTCAGTCTTCTTCTGGGTGCCTGTTTAGGCTGGAAATTCCAAAGATGAATACCTGTTTTCTTTACTGTATCTTGAATTCCAGT] [+] EMBL AU160949 [ ACGAAGAGGAGGAAGGAGCGGCGCCACCACCACCACCACCACCCCACGCCATGGCGAACCCAGCGCAGGGGCCTCTGAGAGCGAGGACGAAGCCCGCGGGGAGGAGGGGCGGCGCTCCGCCGCCCGCCGCGGAGGATCCGTCCCGGGCGGCGGCGGCGGCGGCGAGGCGCTCGGTGCGGAAGTGGAGCACGTGGACGATGAAGACGGCGAAGGTGGCGGCGTACTACGGCTTCATCCCCCTCGTCATCGTCATCGGCATGAACTCCGACCCCAAGCCCTCCATCGGACAGCTCCTCTCCCCGCTGTGATTCCGCTTCGACCCCCACTCGACTCTGCCTNCGCTTTTCTTGGGCTCTGCTA ] consensusID : consensus_4489#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 480 fasta sequence [CGCCGCGGAGGATCCGTCCCGGGCGGCGGCGGCGGCGGCGAGGCGCTCGGTGCGGAAGTGGAGCACGTGGACGATGAAGACGGCGAAGGTGGCGGCGTACTACGGCTTCATCCCCCTCGTCATCGTCATCGGCATGAACTCCGACCCCAAGCCCTCCATCGGACAGCTCCTCTCCCCGCTGTGATTCCGCTTCGACCCCCACTCGACTCTGCCTCCGCTTTTCTTGGGCTCTGCTACATGATCGTACTTACTGCGTAGTTGATCTGCAATTAGTACTATTTTGCTACTAGTATATTCGCTATGTGTTAGCAATATTNTGCNCTGTTAATTTGCTGGGAACTGGGAAGTTAGTACTTGCATCGATCGTCATGTAACCTTTGTGATGAATTTGGTGATGCCTGCGTTTGATTNTGATGCGTGCCAGGCATGTCGAATACCATGGTTCGGTGCTTGCCTTGCGAGAAAAAAAAAAAAAAAAAA] [+] EMBL AU160950 [CGCCGCGGAGGATCCGTCCCGGGCGGCGGCGGCGGCGGCGAGGCGCTCGGTGCGGAAGTGGAGCACGTGGACGATGAAGACGGCGAAGGTGGCGGCGTACTACGGCTTCATCCCCCTCGTCATCGTCATCGGCATGAACTCCGACCCCAAGCCCTCCATCGGACAGCTCCTCTCCCCGCTGTGATTCCGCTTCGACCCCCACTCGACTCTGCCTCCGCTTTTCTTGGGCTCTGCTACATGATCGTACTTACTGCGTAGTTGATCTGCAATTAGTACTATTTTGCTACTAGTATATTCGCTATGTGTTAGCAATATTNTGCNCTGTTAATTTGCTGGGAACTGGGAAGTTAGTACTTGCATCGATCGTCATGTAACCTTTGTGATGAATTTGGTGATGCCTGCGTTTGATTNTGATGCGTGCCAGGCATGTCGAATACCATGGTTCGGTGCTTGCCTTGCGAGAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4489#0 CAGTAGGGTTTTGTTTAGTTTTCACTTTACCTTTTCCCGCACGGCGACGAAGAGGAGGAA 60 consensus_4489#1 ------------------------------------------------------------ consensus_4489#0 GGAGCGGCGCCACCACCACCACCACCACCCCACGCCATGGCGAACCCAGCGCAGGGGCCT 120 consensus_4489#1 ------------------------------------------------------------ consensus_4489#0 CTGAGAGCGAGGACGAAGCCCGCGGGGAGGAGGGGCGGCGCTCCGCCGCCCGCCGCGGAG 180 consensus_4489#1 --------------------------------------------------CGCCGCGGAG 10 ********** consensus_4489#0 GATCCGTCCCGGGCGGCGGCGGCGGCGGCGAGGCGCTCGGTGCGGAAGTGGAGCACGTGG 240 consensus_4489#1 GATCCGTCCCGGGCGGCGGCGGCGGCGGCGAGGCGCTCGGTGCGGAAGTGGAGCACGTGG 70 ************************************************************ consensus_4489#0 ACGATGAAGACGGCGAAGGTGGCGGCGTACTACGGCTTCATCCCCCTCGTCATCGTCATC 300 consensus_4489#1 ACGATGAAGACGGCGAAGGTGGCGGCGTACTACGGCTTCATCCCCCTCGTCATCGTCATC 130 ************************************************************ consensus_4489#0 GGCATGAACTCCGACCCCA-GCCCTCCATCGGACAGCTCCTCTCCCCGCTGTGATTCCGC 359 consensus_4489#1 GGCATGAACTCCGACCCCAAGCCCTCCATCGGACAGCTCCTCTCCCCGCTGTGATTCCGC 190 ******************* **************************************** consensus_4489#0 TTCGACCCCCACTCGACTCTGCCTCCGCTTTTCTTGGGCTCTGCTACATGATCGTACTTA 419 consensus_4489#1 TTCGACCCCCACTCGACTCTGCCTCCGCTTTTCTTGGGCTCTGCTACATGATCGTACTTA 250 ************************************************************ consensus_4489#0 CTGCGTAGTTGATCTGCAATTAGTACTATTTTGCTACTAGTATATTCGCTATGTGTTAGC 479 consensus_4489#1 CTGCGTAGTTGATCTGCAATTAGTACTATTTTGCTACTAGTATATTCGCTATGTGTTAGC 310 ************************************************************ consensus_4489#0 AATATTCTGCACTGTTAATTTGCTGGGAACTGGGAAGTTAGTACTTGCATCGATCGTCAT 539 consensus_4489#1 AATATTNTGCNCTGTTAATTTGCTGGGAACTGGGAAGTTAGTACTTGCATCGATCGTCAT 370 ****** *** ************************************************* consensus_4489#0 GTAACCTTTGTGATGAATTTGGTGATGCCTGCGTTTGATTCTGATGCGTGCCAGGCATGT 599 consensus_4489#1 GTAACCTTTGTGATGAATTTGGTGATGCCTGCGTTTGATTNTGATGCGTGCCAGGCATGT 430 **************************************** ******************* consensus_4489#0 CGAATACCATGGTTCGGTGCTTGCCTTGCGAGATGCCTCTTGATCTATTATTGTGTGGAC 659 consensus_4489#1 CGAATACCATGGTTCGGTGCTTGCCTTGCGAGAAAAAAAAAAAAAAAAAA---------- 480 ********************************* * * * consensus_4489#0 CTTGTTCAGGAGAGTGTTTTTGGCCAATAGCTTTGAGCAATTCAAGGGAGTTTCAGTCTT 719 consensus_4489#1 ------------------------------------------------------------ consensus_4489#0 CTTCTGGGTGCCTGTTTAGGCTGGAAATTCCAAAGATGAATACCTGTTTTCTTTACTGTA 779 consensus_4489#1 ------------------------------------------------------------ consensus_4489#0 TCTTGAATTCCAGT 793 consensus_4489#1 -------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||