Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4494 cluster # 4494       Sequences # 3       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4494#0 length = 1002 sequences # 3  
consensusID : consensus_4494#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1002
fasta sequence 
                              [CTTCCCCTTCTCGCGCTCTCTCTCTCCCTCTCTCGGCGAGGACACAGCGCGGCGGCTACAGGTCGTCGTCGTCGCGCTGGACACGGAGGCCGCGGCGGCGGCGGTGGCGTGGGAAGAGCCGGCGGCGGCGAGGGACGCGGAGGCCGCGGCGGTGCTGGACACGGAGGCTGCGTCGACGGCGGCCCCTCCATGTGCCCCCCGCGAGATGGTCGTAGCCTGCGTCCACGGCGGCCCCCCGCCATGTGCCCGCCCGCCTGCACGACCACGGCACTGGCAGCCACGCCACCATACCGTGGAGCGCTAGCAAGAGAGAAGGAAGAAAACGAGCAGAAG-TAGAAGAAAGAAGAAAAGGAGG-AAAAAAACGAAAGAACCAATGAGCAGCAGCACAAGCCGTCATTTTGGTCCGCTACATCGACATGACCGCTGTGCATGCCGTCCGG-TGCCGCACCGCATGCCGTCCTGGCTGCGTCTCGCCGTCGCTCAACCACGCCTCGCCGATGCACGGCCGTGCC-AAGCGCCATCCGGCGGCACCACCACCGTCAAGCCGGGGGAGGAAAGGAACAAGAACCAGAAAAAGAATATGAAATAAAAAGGGGAAAAGCGGGGAGGCAGTCAGTGCCCGTCGCCGTGCGTCCGCGCCTAGCGCCACAGGAGCCCAGCCGTCTGCCGCGTCGACCGACACAAGGTCGTCCGTCGCCAGCCACCGCACCATCCGCCGTGCATCGCCACCGCCGACTGCACCGACGCCCGGCCGCGCCACGCGACGCTCGCCTTCCACCGCTGCACGGCCGAGCGACGCCCTTCCGCACTAGGACCGCGCCCGCGCCGTCTTCCCGCGTCCCCTCACGACCACCCGCTGCCGCTTGACCTGCGTCGCGTGCCGCTGCAGTGGGCCGCGCGCCGCCGCCCACCACCCGCCCCAGCACGCCGCCGTGTGCGCCGAGAGAGAGGAAGTGGGGAAAAGGGGAAAGTGGAGATGAGAGAGTATACATGACAGGTGGG]

[+] EMBL AK109258             [CTTCCCCTTCTCGCGCTCTCTCTCTCCCTCTCTCGGCGAGGACACAGCGCGGCGGCTACAGGTCGTCGTCGTCGCGCTGGACACGGAGGCCGCGGCGGCGGCGGTGGCGTGGGAAGAGCCGGCGGCGGCGAGGGACGCGGAGGCCGCGGCGGTGCTGGACACGGAGGCTGCGTCGACGGCGGCCCCTCCATGTGCCCCCCGCGAGATGGTCGTAGCCTGCGTCCACGGCGGCCCCCCGCCATGTGCCCGCCCGCCTGCACGACCACGGCACTGGCAGCCACGCCACCATACCGTGGAGCGCTAGCAAGAGAGAAGGAAGAAAACGAGCAGAAG TAGAAGAAAGAAGAAAAGGAGG AAAAAAACGAAAGAACCAATGAGCAGCAGCACAAGCCGTCATTTTGGTCCGCTACATCGACATGACCGCTGTGCATGCCGTCCGGCTGCCGCACCGCATGCCGTCCTGGCTGCGTCTCGCCGTCGCTCAACCACGCCTCGCCGATGCACGGCCGTGCC AAGCGCCATCCGGCGGCACCACCACCGTCAAGCCGGGGGAGGAAAGGAACAAGAACCAGAAAAAGAATATGAAATAAAAAGGGGAAAAGCGGGGAGGCAGTCAGTGCCCGTCGCCGTGCGTCCGCGCCTAGCGCCACAGGAGCCCAGCCGTCTGCCGCGTCGACCGACACAAGGTCGTCCGTCGCCAGCCACCGCACCATCCGCCGTGCATCGCCACCGCCGACTGCACCGACGCCCGGCCGCGCCACGCGACGCTCGCCTTCCACCGCTGCACGGCCGAGCGACGCCCTTCCGCACTAGGACCGCGCCCGCGCCGTCTTCCCGCGTCCCCTCACGACCACCCGCTGCCGCTTGACCTGCGTCGCGTGCCGCTGCAGTGGGCCGCGCGCCGCCGCCCACCACCCGCCCCAGCACGCCGCCGTGTGCGCCGAGAGAGAGGAAGTGGGGAAAAGGGGAAAGTGGAGATGAGAGAGTATACATGACAGGTGGG]
[-] EMBL AU064468             [                                                                                                                                                                                                                                                                                                               GCAAGAGAGAAGGAAGAAAACGAGCAGAAGTTAGAAGAAAGAAGAAAAGGAGGAAAAAAAACGAAAGAACCANTGAGCAGCAGCACAAGCCGTCATTTTGGTCCGCTACATCGACATGACCGCTGTGCATGCCGTCCGG TGCCGCACCGCATGCCGTCCTGGCTGCGTCTCGCCGTCGCTCAACCACGCCTCGCCGATG ACGGCCGTGCCAAAGC CCATCCGGCGGCACCACCACCGTCAAGCCGGGGGAGGAAAGGAACAAGAACCAGAAAAAGAATATGAAATAAAAAGGGGAAAAG                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL AU064469             [                                                                                                                                                                                                                                                                                                                                                                                                     AAGCCGTCATTTTGGTCCGCTACATCGACATGACCGNTGTGCATGCCGTCCGG TGCCGCACCGCATGCCGTCCTGGCTGCGTCTCGCCGTCGCTNAACCACGCCTCGCCGATTGACGGCCGTGCN AAGGCCCATCCGGCGGCACCACCACCGTCAAGCCGGGGGAGGAAAGGAACAAGAACCAGAAAAAGAATATGAAATAAAAAGGGGAAAAG                                                                                                                                                                                                                                                                                                                                                                                                                 ]




>consensus_4494#0
CTTCCCCTTCTCGCGCTCTCTCTCTCCCTCTCTCGGCGAGGACACAGCGCGGCGGCTACA
GGTCGTCGTCGTCGCGCTGGACACGGAGGCCGCGGCGGCGGCGGTGGCGTGGGAAGAGCC
GGCGGCGGCGAGGGACGCGGAGGCCGCGGCGGTGCTGGACACGGAGGCTGCGTCGACGGC
GGCCCCTCCATGTGCCCCCCGCGAGATGGTCGTAGCCTGCGTCCACGGCGGCCCCCCGCC
ATGTGCCCGCCCGCCTGCACGACCACGGCACTGGCAGCCACGCCACCATACCGTGGAGCG
CTAGCAAGAGAGAAGGAAGAAAACGAGCAGAAGTAGAAGAAAGAAGAAAAGGAGGAAAAA
AACGAAAGAACCAATGAGCAGCAGCACAAGCCGTCATTTTGGTCCGCTACATCGACATGA
CCGCTGTGCATGCCGTCCGGTGCCGCACCGCATGCCGTCCTGGCTGCGTCTCGCCGTCGC
TCAACCACGCCTCGCCGATGCACGGCCGTGCCAAGCGCCATCCGGCGGCACCACCACCGT
CAAGCCGGGGGAGGAAAGGAACAAGAACCAGAAAAAGAATATGAAATAAAAAGGGGAAAA
GCGGGGAGGCAGTCAGTGCCCGTCGCCGTGCGTCCGCGCCTAGCGCCACAGGAGCCCAGC
CGTCTGCCGCGTCGACCGACACAAGGTCGTCCGTCGCCAGCCACCGCACCATCCGCCGTG
CATCGCCACCGCCGACTGCACCGACGCCCGGCCGCGCCACGCGACGCTCGCCTTCCACCG
CTGCACGGCCGAGCGACGCCCTTCCGCACTAGGACCGCGCCCGCGCCGTCTTCCCGCGTC
CCCTCACGACCACCCGCTGCCGCTTGACCTGCGTCGCGTGCCGCTGCAGTGGGCCGCGCG
CCGCCGCCCACCACCCGCCCCAGCACGCCGCCGTGTGCGCCGAGAGAGAGGAAGTGGGGA
AAAGGGGAAAGTGGAGATGAGAGAGTATACATGACAGGTGGG

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)