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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4497#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 470 fasta sequence
[GGTNCCCCCCCCNAAAGGGCAAAGNNACNCCCCGNTTTGGATNCGGGGGGTTCCCATTTTTTGCCCTTCGCTTCTGGANCCTTTCCCAANCANATGTGGGTTCTTNAAANCAGGAGTACGACCGAGAGCGGACCTTCCCATTGTCCACCGCAAGTGCTTNTAAGCGCATAATCGTAGCCACCGTTCTTTCAAGTTTCCGACCAACTCGCAGCAATATCGGCGNCAAGATAAACCGAGATGTTGGGCTGCTTGCGACTTTGANAGGCCCATGTCTTCGAAATTTTTTGGCCATGATGTTGGTGTGTTGGGGGGAGGCATGTNTAAAACTGCAGGAAAAGTACGATGGTATTTGTCTTTAAGTAGTTCGGCGTTGTCGCGCGGANAAACCGGGCAGGCGGNCCACGTATTCGGGACNTTGATGATNCAATTTAGCTCTGTTACCCTTAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AT003354 [GGTNCCCCCCCCNAAAGGGCAAAGNNACNCCCCGNTTTGGATNCGGGGGGTTCCCATTTTTTGCCCTTCGCTTCTGGANCCTTTCCCAANCANATGTGGGTTCTTNAAANCAGGAGTACGACCGAGAGCGGACCTTCCCATTGTCCACCGCAAGTGCTTNTAAGCGCATAATCGTAGCCACCGTTCTTTCAAGTTTCCGACCAACTCGCAGCAATATCGGCGNCAAGATAAACCGAGATGTTGGGCTGCTTGCGACTTTGANAGGCCCATGTCTTCGAAATTTTTTGGCCATGATGTTGGTGTGTTGGGGGGAGGCATGTNTAAAACTGCAGGAAAAGTACGATGGTATTTGTCTTTAAGTAGTTCGGCGTTGTCGCGCGGANAAACCGGGCAGGCGGNCCACGTATTCGGGACNTTGATGATNCAATTTAGCTCTGTTACCCTTAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_4497#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 449 fasta sequence
[TCAAATCATTNTTCCCCCCAAGCCAAGNCTCCGTTTGGAACGGGGTTCCATTTTNGCCTNGCTCTNGNCCTTNCANCANATTTGGTCTCGAAGCAGAGTACNNCGANANCGGNCCTTCCATTGTCCCCCCCAAGTNNTTNTAAGNGCATAATCNTANCCNCCGTTNTTTCAAGTTTCCGACCAACTCGCANCAATNTCGNCGNCAANNTAAACCGANATNTTGGGCTNCTTGCGNCTTTGANAGGCCCATGTCTTCGAAATTTTTTGGCCATAATGTTGGTGTNTTNGGGGNAGGCNTGTNTAAAANTGCAGNAAAAGTACGATNGTTTTTGTCTTTAAGTAGTTCGNCGTTGTCNCNCGGANAAACCGGGCAGGNGGNCCNCGTATTCGGGAGGTTGNNCANCCCATTTAGCTCTGTTCCCCTTAAAAAAAAANAAATAANAAAAAAA]
[+] EMBL AT003768 [TCAAATCATTNTTCCCCCCAAGCCAAGNCTCCGTTTGGAACGGGGTTCCATTTTNGCCTNGCTCTNGNCCTTNCANCANATTTGGTCTCGAAGCAGAGTACNNCGANANCGGNCCTTCCATTGTCCCCCCCAAGTNNTTNTAAGNGCATAATCNTANCCNCCGTTNTTTCAAGTTTCCGACCAACTCGCANCAATNTCGNCGNCAANNTAAACCGANATNTTGGGCTNCTTGCGNCTTTGANAGGCCCATGTCTTCGAAATTTTTTGGCCATAATGTTGGTGTNTTNGGGGNAGGCNTGTNTAAAANTGCAGNAAAAGTACGATNGTTTTTGTCTTTAAGTAGTTCGNCGTTGTCNCNCGGANAAACCGGGCAGGNGGNCCNCGTATTCGGGAGGTTGNNCANCCCATTTAGCTCTGTTCCCCTTAAAAAAAAANAAATAANAAAAAAA]
consensusID : consensus_4497#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 372 fasta sequence
[AAGGTACTNACCGAAGAAGCGGACCCTTTCCCATTGTNNCACCCGCCAAGTGNTTTTAAAGNGCCATAATNGTAGCCCCCGTTCTTTGCAAGTTNACCGACCAACCTCGACAGCAATATCGGCGNCAANATAAACCGAAATGTTGGGCTGCTNCCGACTTTGAAAGGCCCATGTCTTCNAAATTTTTTGGCCATAATGTTGGTGTGTTGGGGGNAGGCATNTNTAAAACTGCAGGAAAAGTACGATGGTATTTGTCTTTAAGTAGTTCGGCGTTGTCGCGCGNAAAAACCGGGCAGNCGGNCCACGTATTCGGNAGNTTNATNATACAATTTAGCTCTGTTACCCTTAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AT003761 [AAGGTACTNACCGAAGAAGCGGACCCTTTCCCATTGTNNCACCCGCCAAGTGNTTTTAAAGNGCCATAATNGTAGCCCCCGTTCTTTGCAAGTTNACCGACCAACCTCGACAGCAATATCGGCGNCAANATAAACCGAAATGTTGGGCTGCTNCCGACTTTGAAAGGCCCATGTCTTCNAAATTTTTTGGCCATAATGTTGGTGTGTTGGGGGNAGGCATNTNTAAAACTGCAGGAAAAGTACGATGGTATTTGTCTTTAAGTAGTTCGGCGTTGTCGCGCGNAAAAACCGGGCAGNCGGNCCACGTATTCGGNAGNTTNATNATACAATTTAGCTCTGTTACCCTTAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4497#0 GGTNCCCCCCCCNAAAGGGCAAAGNNACNCCCCGNTTTGGATNCGGGGGGTTCCCATTTT 60
consensus_4497#2 ------------------------------------------------------------
consensus_4497#1 ----------------TCAAATCATTNTTCCCCCCAAGCCAAGNCTCCGTTTGGAACGGG 44
consensus_4497#0 TTGCCCTTCGCTTCTGGANCCTTTCCCAANCANATGTGGGTTCTTNAAANCAGGAGTACG 120
consensus_4497#2 ----------------------------------------------AAGGTACTNAC-CG 13
consensus_4497#1 GTTCCATTTTNGCCTNGCTCTNGNCCTTNCANCANATTTGGTCTCGAAGCAGAGTAC--- 101
**
consensus_4497#0 ACCGAGAGCGGACCTTCCCATTGTCC-ACCG--CAAGTGCTTNTAAGCG--CATAATCGT 175
consensus_4497#2 AAGAAGCGGACCCTTTCCCATTGTNNCACCCGCCAAGTGNTTTTAAAGNGCCATAATNGT 73
consensus_4497#1 NNCGANANCGGNCCTTCC-ATTGTCCCCCC---CAAGTNNTTNTAAGNG--CATAATCNT 155
* * **** ***** ** ***** ** *** ****** *
consensus_4497#0 AGCCACCGTTCTTT-CAAGTTT-CCGACCAACTC--GCAGCAATATCGGCGNCAAGATAA 231
consensus_4497#2 AGCCCCCGTTCTTTGCAAGTTNACCGACCAACCTCGACAGCAATATCGGCGNCAANATAA 133
consensus_4497#1 ANCCNCCGTTNTTT-CAAGTTT-CCGACCAACTC--GCANCAATNTCGNCGNCAANNTAA 211
* ** ***** *** ****** ********* ** **** *** ****** ***
consensus_4497#0 ACCGAGATGTTGGGCTGCTTGCGACTTTGANAGGCCCATGTCTTCGAAATTTTTTGGCCA 291
consensus_4497#2 ACCGAAATGTTGGGCTGCTNCCGACTTTGAAAGGCCCATGTCTTCNAAATTTTTTGGCCA 193
consensus_4497#1 ACCGANATNTTGGGCTNCTTGCGNCTTTGANAGGCCCATGTCTTCGAAATTTTTTGGCCA 271
***** ** ******* ** ** ****** ************** **************
consensus_4497#0 TGATGTTGGTGTGTTGGGGGGAGGCATGTNTAAAACTGCAGGAAAAGTACGATGGTATTT 351
consensus_4497#2 TAATGTTGGTGTGTTGGGGGNAGGCATNTNTAAAACTGCAGGAAAAGTACGATGGTATTT 253
consensus_4497#1 TAATGTTGGTGTNTTNGGGGNAGGCNTGTNTAAAANTGCAGNAAAAGTACGATNGTTTTT 331
* ********** ** **** **** * ******* ***** *********** ** ***
consensus_4497#0 GTCTTTAAGTAGTTCGGCGTTGTCGCGCGGANAAACCGGGCAGGCGGNCCACGTATTCGG 411
consensus_4497#2 GTCTTTAAGTAGTTCGGCGTTGTCGCGCGNAAAAACCGGGCAGNCGGNCCACGTATTCGG 313
consensus_4497#1 GTCTTTAAGTAGTTCGNCGTTGTCNCNCGGANAAACCGGGCAGGNGGNCCNCGTATTCGG 391
**************** ******* * ** * *********** ***** *********
consensus_4497#0 GACNTTGATGATNCAATTTAGCTCTGTTACCCTTAAAAAAAAAAAAAAAAAAAAAAAAA 470
consensus_4497#2 NAGNTTNATNATACAATTTAGCTCTGTTACCCTTAAAAAAAAAAAAAAAAAAAAAAAAA 372
consensus_4497#1 GAGGTTGNNCANCCCATTTAGCTCTGTTCCCCTTAAAAAAAAANAAATAANAAAAAAA- 449
* ** * * ************* ************** *** ** *******
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||