cluster # 4504

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Oryza sativa
cluster # 4504 cluster # 4504 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4504#0 length = 706 sequences # 1

consensus_4504#1 length = 340 sequences # 2

consensusID : consensus_4504#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 706
fasta sequence

                              [CCAAATTCCATAATAGTTCTTGTTGCAATAAAAACCAGGACTAAAAAACATCTTTAGTCCCGATTCAAAAGGTTAGAGCTACTTTTTAATCTTTAATCCTAGTTCAAAAAAGGTAGGCGGTGTCAGACCCCTCCTTTACCTTTAATCCCGGTTGGACTAAAGAGCTATTTCTAGTTCCGGTTGTTAAACAACCAGGAAAAAAAAGATCCGCATGCGCGGAGAGGATGAGGCGTGCGCGCAACATCGAGGAGGAGGAGGAGGCGCACGGGATAAGTTAATAAGTTCTATCTCCTCCTCCCTCACCTTTATCTCCTCTCCTCACTCACCCCATCTCTTCCTCTTCCTCCTCTGGATCCGCCCCCCTCCCCTCTCCTCCCCACTTCTCAGGAAGCGGAGGCGGCCTCGCGCAGTGGCGGCGGCCTCGTGTGGAGGACCGCGCCCGGTGGCGGCTTGCGCGGAAGGCCACGCGGCGGCAGGCGGTGGAGGCTGGCGCGGCTGCACGGATTTTTTTTTTCTTTTTTCTTTCTTTGTGTTGAATGATTCGATCTGTGTTGTCTGTGTTGAATGTATGATTCGATCTGTGTTGAGAATGAACTATGTTGTTATGAATGTTGTTGTGAATGATTTGGGAGGAACTATGTTGTTGTGAATGATTTGGGATGACCTATGTTGCTGTGAATGATTTGGGATAATGGACGTGAGGTAT]

[+] EMBL AK111483             [CCAAATTCCATAATAGTTCTTGTTGCAATAAAAACCAGGACTAAAAAACATCTTTAGTCCCGATTCAAAAGGTTAGAGCTACTTTTTAATCTTTAATCCTAGTTCAAAAAAGGTAGGCGGTGTCAGACCCCTCCTTTACCTTTAATCCCGGTTGGACTAAAGAGCTATTTCTAGTTCCGGTTGTTAAACAACCAGGAAAAAAAAGATCCGCATGCGCGGAGAGGATGAGGCGTGCGCGCAACATCGAGGAGGAGGAGGAGGCGCACGGGATAAGTTAATAAGTTCTATCTCCTCCTCCCTCACCTTTATCTCCTCTCCTCACTCACCCCATCTCTTCCTCTTCCTCCTCTGGATCCGCCCCCCTCCCCTCTCCTCCCCACTTCTCAGGAAGCGGAGGCGGCCTCGCGCAGTGGCGGCGGCCTCGTGTGGAGGACCGCGCCCGGTGGCGGCTTGCGCGGAAGGCCACGCGGCGGCAGGCGGTGGAGGCTGGCGCGGCTGCACGGATTTTTTTTTTCTTTTTTCTTTCTTTGTGTTGAATGATTCGATCTGTGTTGTCTGTGTTGAATGTATGATTCGATCTGTGTTGAGAATGAACTATGTTGTTATGAATGTTGTTGTGAATGATTTGGGAGGAACTATGTTGTTGTGAATGATTTGGGATGACCTATGTTGCTGTGAATGATTTGGGATAATGGACGTGAGGTAT]




>consensus_4504#0
CCAAATTCCATAATAGTTCTTGTTGCAATAAAAACCAGGACTAAAAAACATCTTTAGTCC
CGATTCAAAAGGTTAGAGCTACTTTTTAATCTTTAATCCTAGTTCAAAAAAGGTAGGCGG
TGTCAGACCCCTCCTTTACCTTTAATCCCGGTTGGACTAAAGAGCTATTTCTAGTTCCGG
TTGTTAAACAACCAGGAAAAAAAAGATCCGCATGCGCGGAGAGGATGAGGCGTGCGCGCA
ACATCGAGGAGGAGGAGGAGGCGCACGGGATAAGTTAATAAGTTCTATCTCCTCCTCCCT
CACCTTTATCTCCTCTCCTCACTCACCCCATCTCTTCCTCTTCCTCCTCTGGATCCGCCC
CCCTCCCCTCTCCTCCCCACTTCTCAGGAAGCGGAGGCGGCCTCGCGCAGTGGCGGCGGC
CTCGTGTGGAGGACCGCGCCCGGTGGCGGCTTGCGCGGAAGGCCACGCGGCGGCAGGCGG
TGGAGGCTGGCGCGGCTGCACGGATTTTTTTTTTCTTTTTTCTTTCTTTGTGTTGAATGA
TTCGATCTGTGTTGTCTGTGTTGAATGTATGATTCGATCTGTGTTGAGAATGAACTATGT
TGTTATGAATGTTGTTGTGAATGATTTGGGAGGAACTATGTTGTTGTGAATGATTTGGGA
TGACCTATGTTGCTGTGAATGATTTGGGATAATGGACGTGAGGTAT

consensusID : consensus_4504#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 340
fasta sequence

                              [GTGCTGCGATCGCAAGTACGAGCTTGTCAGCTACGAGCNTACGACGCGCTCCCGGCCTTCCTCAAGCACAACGAGTTCATCATCGACTACTACCGCAGCGAGTGGCCCATCAAGCAGGCGCTCCTCAGCGCCTTAGTCGTCCACAACGAGACCATCTTCCAGACGTAATTAAGCACTCGATCGATCAAAAGCACGTATATTAGCTAAAGACGATACTCTACCAGTAGAGAAACTATCTTTTATCGGTCGACCAAATTCCATAATAGTTCTTGTTGCAATAAAAACCAGGACTAAAAAACATCTTTAGTCCCGATTCAAAAGGTTAAAAAAAAAAAAAAAA]

[+] EMBL AU078732             [GTGCTGCGATCGCAAGTACGAGCTTGTCAGCTACGAGCNTACGACGCGCTCCCGGCCTTCCTCAAGCACAACGAGTTCATCATCGACTACTACCGCAGCGAGTGGCCCATCAAGCAGGCGCTCCTCAGCGCCTTAGTCGTCCACAACGAGACCATCTTCCAGACGTAATTAAGCACTCGATCGATCAAAAGCACGTATATTAGCTAAAGACGATACTCTACCAGTAGAGAAACTATCTTTTATCGGTCGACCAAATTCCATAATAGTTCTTGTTGCAATAAAAACCAGGACTAAAAAACATCTTTAGTCCCGATTCAAAAGGTTAAAAAAAAAAAAAAAA]
[+] EMBL AU078734             [                                        ACGACGCGCTCCCGGCCTTCCTCAAGCACAACGAGTTCATCATCGACTACTACCGCAGCGAGTGGCCCATCAAGCA GCGCTCCTCAGCGCCTTAGTCGTCCACAACGAGACCATCTTCCAGACGTAATTAAGCACTCGATCGATCAAAAGCACGTATATTAGCTAAAGACGATACTCTACCAGTAGAGAAACTATCTTTTATCGGTCGACCAAATTCCATAATAGTTCTTGTTGCAATAAAAACCAGGACTAAAAAACATCTTTAGTCCCGATTCAAAAGGTTAAAAAAAAAAAAAAA ]




>consensus_4504#1
GTGCTGCGATCGCAAGTACGAGCTTGTCAGCTACGAGCNTACGACGCGCTCCCGGCCTTC
CTCAAGCACAACGAGTTCATCATCGACTACTACCGCAGCGAGTGGCCCATCAAGCAGGCG
CTCCTCAGCGCCTTAGTCGTCCACAACGAGACCATCTTCCAGACGTAATTAAGCACTCGA
TCGATCAAAAGCACGTATATTAGCTAAAGACGATACTCTACCAGTAGAGAAACTATCTTT
TATCGGTCGACCAAATTCCATAATAGTTCTTGTTGCAATAAAAACCAGGACTAAAAAACA
TCTTTAGTCCCGATTCAAAAGGTTAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4504#0      CCAAATTCCATAATAGTTCTTGTTGCAATAAAAACCAGGACTAAAAAACATCTTTAGTCC 60
consensus_4504#1      ------------------------------------------------------------
                                                                                  

consensus_4504#0      CGATTCAAAAGGTTAGAGCTACTTTTTAATCTTTAATCCTAGTTCAAAAAAGGTAGGCGG 120
consensus_4504#1      ------------------------------------------------------------
                                                                                  

consensus_4504#0      TGTCAGACCCCTCCTTTACCTTTAATCCCGGTTGGACTAAAGAGCTATTTCTAGTTCCGG 180
consensus_4504#1      ------------------------------------------------------------
                                                                                  

consensus_4504#0      TTGTTAAACAACCAGGAAAAAAAAGATCCGCATGCGCGGAGAGGATGAGGCGTGCGCGCA 240
consensus_4504#1      ------------------------------------------------------------
                                                                                  

consensus_4504#0      ACATCGAGGAGGAGGAGGAGGCGCACGGGATAAGTTAATAAGTTCTATCTCCTCCTCCCT 300
consensus_4504#1      ------------------------------------------------------------
                                                                                  

consensus_4504#0      CACCTTTATCTCCTCTCCTCACTCACCCCATCTCTTCCTCTTCCTCCTCTGGATCCGCCC 360
consensus_4504#1      ---------------------------------------------GTGCTGCGATCGCAA 15
                                                                      ***    ***  

consensus_4504#0      CCCTCCCCTCTCCTCCCCACTTCTCAGGAAGCGGAGGCGGCCTCGCGCAGTGGCGGCGGC 420
consensus_4504#1      GTACGAGCTTGTCAGCTACGAGCNTACGACGCGCTCCCGGCCTTCCTCAAGCACAACGAG 75
                             **   *  *      *  * ** ***    ******  * **    *  **  

consensus_4504#0      CTCGTGTGGAGGACCGCGCCCGGTGGCGGCTTGCGCGGAAGGCCACGCGGCGGCAGGCGG 480
consensus_4504#1      TTCAT--CATCGACTACTACCG-CAGCGAGTGGCCCATCAAGCA-------GGCGCTCCT 125
                       ** *      ***  *  ***   ***  * ** *   * **        ***   *  

consensus_4504#0      TGGAGGCTGGCGCGGCTGCACGGATTTTTTTTTTCTTTTTTCTTTCTTTGTGTTGAATGA 540
consensus_4504#1      CAGCGCCTTAGTCGTCCACAACGAGACCATCTTCCAGACGTAATTAAGCAC-TCGATCGA 184
                        * * **    ** *  **  **     * ** *     *  **       * **  **

consensus_4504#0      TTCGATCTGTGTTGTCTGTGTTGAATGTATGATTCGATCTGTGTTGAGAATGAACTATGT 600
consensus_4504#1      TCAAAAGCACGT-ATATTAGCTAAAGACGATACTCTACCAGTA--GAGAA---ACTATCT 238
                      *   *     **  * *  * * **      * ** * * **   *****   ***** *

consensus_4504#0      TGTTATGAATGTTGTTGTGAATGATTTGGGAGGAACTATGTTGTTGTGAATGATTTGGGA 660
consensus_4504#1      T-TTAT-----CGGTCGACCAAATTCCATAATAGTTCTTGTTGCAATAAA-AACCAGGAC 291
                      * ****       ** *   *   *     *       *****   * **  *   **  

consensus_4504#0      TGACCTATGTTGCTGTGAATGATTTGGGATAATGGACGTGAGGTAT--- 706
consensus_4504#1      TAAAAAACATCTTTAGTCCCGATTCAAAAGGTTAAAAAAAAAAAAAAAA 340
                      * *   *  *   *      ****    *   *  *    *   *