These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4505#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2486 fasta sequence [AAAAAAAAAAAAAGTCACCCAGAACCGCCGCTGCGCCTCCTCCTCCTTCCGCCGCCGCTGAGCCGCTCTTGCTCCTCTATCGCTGCGCCGCTCCTGCTGGCCCGCATCACCGACGCGCCCATCCACACCCACACCTCGCCAGTGCTGACACCCCTGCGACATTGCCGCCGCCCCCCGCGATTTGCCGTTATTCCCCTAGATCGGGTGTTGCCACATCGCCGTCCACGCCTGCGGTTCCTCCCCTCTCCCCTTCCGTGATCTCCCTCTCCACACCCACGGTTCCTCCGCTCTCCCCTTCCGCAATCTCCCTCTCCACGCCCGCGGTTCTTCTGCTCTCCCCTTCAGACGCCATAGCCGATCTCCTCACGGCCGTTGCCATCGCGACCACCATCGATTCCTGACCGCCAATTCGGGGTCACGGTGACCGAGCCCCCGCCGATCGTCCCATCACGCCACCCCTTCGCCACTCACTGCCAGGTCGTCATCCATCGTTCCTCCTCTACTCACGATCCCCAACATGGTCCATCAGAATCGTTTGTGCTCTCCGCTCTCTCCAAGAGGACTTGGAGCTGCTACATTACGTTGACAGCGACTATGCTTTCACCTCCCGCCTTCGTCACGGCTACTTAGCAGGAAGGTCTTCCCATGGTGCTCGATCACATCGCCGCCTCCGCGCACTTGCTCTTTCCCCGACGGTCGATGCTGGCACCGTGCCGCTCCACCTCAGGCAGAGAAGATTAGATCGCCTCCACGGCTCCGCCATTCCGAATCCGGCCAGTTCTGCAAATGAGGCTGCTGACATCATCGATCCGCCATCTCGCACAGCTTGATGGGCATCATCGCTCGCCTTTGCCTCATGACCTTTCCGTTGCCAACTATCGAAGCTGCCTAAATTTACTAGCAGGTCATCGGTTGAAACCATCCATGTGCTGAATAGGTCTCAAGATAGGAGCAAGTTCCGCAAGACGTGCATTGGACACAGCCGTCGCATCGCTCCTCTGCAGCAGATCCACGCACCGGCCACCGCCTTCACAACATGATTTGGAGGTGGAGAAGCTTGGTGTGCCCTCGACGAGTTCTTCCACAAATTTACTACCCTCGATGATGGCCCAGGCCGCGGCGGCTTTGTCGGCTTCTTCGACAACACTAATGTCTACCTTGCCAACAATATGTGAGTTAATTTCTTCCTCTCTGCTTTCTGAAATACTTTTCAATGTGAACACTAGCAATGTGAATCATCTGATATTAAGAAGGTCATTACTTTCAGAAATACTTCTATAAAAGCTTGTGTGCATGGATTGTTCTAAATGTTTTGTTTTGTAGATATATACAATTTTCATCAATACAAATTGTTAGTTAGCTCATATGCTCCTTGTTGATGCAAATTTTGTCATGTAAGTACTGTATTCATGGTTGTTGGATGTAGGTATCAATTAAACCATATTCTTTATTATCAACGTATAACCAATTTAAGCTCAATTTTATGGTTTGCTGCCGTTGGTATAGAATATGCACTGTTTAATTAAATATATAAGTCAAAGCTGTTATCTATCAGTTTGTATGTTTCTATTAATGATATTTTGATGCAATGGATAGGATGGCTGTTACGGAATGTAGCGAATTCTTGATGAAATGTACTTTCTAATATTAATTGATCAAATTTGAGTATGGAGGCCCTTTGCTTGTCGACTAAGTGACAACGTCATGGCTAGGGATGCACTGGTGTTTTTATATTTGGATCTCAAGCCCTCGTATCTGGTTCTCCAGCTGAATGTGTTGATGCGATGACTGCAGCTTACCAATGGATGACTCTGTCATCTTTTCGCTGGCTTGAAGAACTCTGCAGAGAAGCAGAGGTAGGATATGTTGACATCAGGTGCTTAACTGAAACCCGAATAGAATCCATTTATTTTGACTTCAAACTGATGTTCAGATCTGACATTTGGTGCACAACATGCAGTTGGGGGTTTTGACGTTTCTTAAGTTTTTTTCATTGAACTTGATCAGCCAAATAAGCTATTTTAGACGTGATTCATGACCTGTTAGTCTGAAGCGAAAGCAGAATCAGATTCAAGAAATGCAGATGTAGAACTATCCAATCATATCGATCGAGCACAATCTTGTCATGCCATTGCCAGACATCCATTCTTGCACAAAGCAAACTCCACTCAAGATTGTTAGATAATGCATGTACATCAAAATAAAGATATATGCTTTTCTCTGCTGAACTGCATATTCTGGATCAATCATCCATGGTCATCCATACTCAAAAATTTTGTTGGTATATCAGTCATGGAAATTACATTTTATTTTTTCTTCCTTTTCACCTAAACTCACAGTCTGCATATATTTTATACGGTCCCTTCTTAATGTTTGGGGCTTAGCTATTAGTATTTACAAATTCATACATGTGAGTGTTACCTCAATATGTATTATCTGATCTATACAAGTTCATACTGAACTGGTATTATACAATGTACACAAAC] [+] EMBL AK100899 [AAAAAAAAAAAAAGTCACCCAGAACCGCCGCTGCGCCTCCTCCTCCTTCCGCCGCCGCTGAGCCGCTCTTGCTCCTCTATCGCTGCGCCGCTCCTGCTGGCCCGCATCACCGACGCGCCCATCCACACCCACACCTCGCCAGTGCTGACACCCCTGCGACATTGCCGCCGCCCCCCGCGATTTGCCGTTATTCCCCTAGATCGGGTGTTGCCACATCGCCGTCCACGCCTGCGGTTCCTCCCCTCTCCCCTTCCGTGATCTCCCTCTCCACACCCACGGTTCCTCCGCTCTCCCCTTCCGCAATCTCCCTCTCCACGCCCGCGGTTCTTCTGCTCTCCCCTTCAGACGCCATAGCCGATCTCCTCACGGCCGTTGCCATCGCGACCACCATCGATTCCTGACCGCCAATTCGGGGTCACGGTGACCGAGCCCCCGCCGATCGTCCCATCACGCCACCCCTTCGCCACTCACTGCCAGGTCGTCATCCATCGTTCCTCCTCTACTCACGATCCCCAACATGGTCCATCAGAATCGTTTGTGCTCTCCGCTCTCTCCAAGAGGACTTGGAGCTGCTACATTACGTTGACAGCGACTATGCTTTCACCTCCCGCCTTCGTCACGGCTACTTAGCAGGAAGGTCTTCCCATGGTGCTCGATCACATCGCCGCCTCCGCGCACTTGCTCTTTCCCCGACGGTCGATGCTGGCACCGTGCCGCTCCACCTCAGGCAGAGAAGATTAGATCGCCTCCACGGCTCCGCCATTCCGAATCCGGCCAGTTCTGCAAATGAGGCTGCTGACATCATCGATCCGCCATCTCGCACAGCTTGATGGGCATCATCGCTCGCCTTTGCCTCATGACCTTTCCGTTGCCAACTATCGAAGCTGCCTAAATTTACTAGCAGGTCATCGGTTGAAACCATCCATGTGCTGAATAGGTCTCAAGATAGGAGCAAGTTCCGCAAGACGTGCATTGGACACAGCCGTCGCATCGCTCCTCTGCAGCAGATCCACGCACCGGCCACCGCCTTCACAACATGATTTGGAGGTGGAGAAGCTTGGTGTGCCCTCGACGAGTTCTTCCACAAATTTACTACCCTCGATGATGGCCCAGGCCGCGGCGGCTTTGTCGGCTTCTTCGACAACACTAATGTCTACCTTGCCAACAATATGTGAGTTAATTTCTTCCTCTCTGCTTTCTGAAATACTTTTCAATGTGAACACTAGCAATGTGAATCATCTGATATTAAGAAGGTCATTACTTTCAGAAATACTTCTATAAAAGCTTGTGTGCATGGATTGTTCTAAATGTTTTGTTTTGTAGATATATACAATTTTCATCAATACAAATTGTTAGTTAGCTCATATGCTCCTTGTTGATGCAAATTTTGTCATGTAAGTACTGTATTCATGGTTGTTGGATGTAGGTATCAATTAAACCATATTCTTTATTATCAACGTATAACCAATTTAAGCTCAATTTTATGGTTTGCTGCCGTTGGTATAGAATATGCACTGTTTAATTAAATATATAAGTCAAAGCTGTTATCTATCAGTTTGTATGTTTCTATTAATGATATTTTGATGCAATGGATAGGATGGCTGTTACGGAATGTAGCGAATTCTTGATGAAATGTACTTTCTAATATTAATTGATCAAATTTGAGTATGGAGGCCCTTTGCTTGTCGACTAAGTGACAACGTCATGGCTAGGGATGCACTGGTGTTTTTATATTTGGATCTCAAGCCCTCGTATCTGGTTCTCCAGCTGAATGTGTTGATGCGATGACTGCAGCTTACCAATGGATGACTCTGTCATCTTTTCGCTGGCTTGAAGAACTCTGCAGAGAAGCAGAGGTAGGATATGTTGACATCAGGTGCTTAACTGAAACCCGAATAGAATCCATTTATTTTGACTTCAAACTGATGTTCAGATCTGACATTTGGTGCACAACATGCAGTTGGGGGTTTTGACGTTTCTTAAGTTTTTTTCATTGAACTTGATCAGCCAAATAAGCTATTTTAGACGTGATTCATGACCTGTTAGTCTGAAGCGAAAGCAGAATCAGATTCAAGAAATGCAGATGTAGAACTATCCAATCATATCGATCGAGCACAATCTTGTCATGCCATTGCCAGACATCCATTCTTGCACAAAGCAAACTCCACTCAAGATTGTTAGATAATGCATGTACATCAAAATAAAGATATATGCTTTTCTCTGCTGAACTGCATATTCTGGATCAATCATCCATGGTCATCCATACTCAAAAATTTTGTTGGTATATCAGTCATGGAAATTACATTTTATTTTTTCTTCCTTTTCACCTAAACTCACAGTCTGCATATATTTTATACGGTCCCTTCTTAATGTTTGGGGCTTAGCTATTAGTATTTACAAATTCATACATGTGAGTGTTACCTCAATATGTATTATCTGATCTATACAAGTTCATACTGAACTGGTATTATACAATGTACACAAAC] consensusID : consensus_4505#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 578 fasta sequence [TCNTCNAANGATANGGAGCAAGTTCCGCAAGACGTGCATTGGACACAGCCGTCGCATCGCTCCTCTGCAGCAGATCCACGCACCGGCCACCGCCTTCACAACATGATTTGGAGGTGGAGAAGCTTGGTGTGCCCTCGACGAGTTCTTCCACAAATTTACTACCCTCG-ATG-ATGGCCCAGGCCGCGGCGGCTTTGTCGGCTTCTTCGACAACACTAATGTCTACCTTGCCAACAATATGGATGCACTGGTGTTTTTATATTTGGATCTCAAGCCCTCGTATCTGGTTCTCCAGCTGAATGTGTTGATGCGATGACTGCAGCTTACCAATGGATGACTCTGTCATCTTTTCGCTGGCTTGAAGAACTCTGGCAGAGAAGCAGAGGTAGGATATGTTGACATCAGGTGC-TAACTGGAAACCCGAATAGAATCCA-TTATTTTGACTTCAAACTGATGTTCAGATCTGACATTTGGTGCACAACATGCAGTTGGGGGTTTTGACGTTTCTTAAGTTTTTTTCATTGAACTTGATCAGCCAAATAAGCTATTTTAGACGTGATTCAAAAAAAAAAAAAAAAAAA] [+] EMBL C98745 [TCNTCNAANGATANGGAGCAAGTTCCGCAAGACGTGCATTGGACACAGCCGTCGCATCGCTCCTCTGCAGCAGATCCACGCACCGGCCACCGCCTTCACAACATGATTTGGAGGTGGAGAAGCTTGGTGTGCCCTCGACGAGTTCTTCCACAAATTTACTACCCTCG ATG ATGGCCCAGGCCGCGGCGGCTTTGTCGGCTTCTTCGACAACACTAATGTCTACCTTGCCAACAATATGGATGCACTGGTGTTTTTATATTTGGATCTCAAGCCCTCGTATCTGGTTCTCCAGCTGAATGTGTTGATGCGATGACTGCAGCTTACCAATGGATGACTCTGTCATCTTTTCGCTGGCTTGAAGAACTCTGGCAGAGAAGCAGAGGTAGGATATGTTGACATCAGGTGC TAACTGGAAACCCGAATAGAATCCA TTATTTTGACTTCA ] [+] EMBL C98746 [ aACGAGTTCTTCCACAAATTTACTACCCTCGAATGAATGGCCCAGGCCGCGGCGGCTTTGTCGGCTTCTTCGACAACACTAATGTCTACCTTGCCAACAATATGGATGCACTGGTGTTTTTATATTTGGATCTCAAGCCCTCGTATCTGGTTCTCCAGCTGAATGTGTTGATGCGATGACTGCAGCTTACCAATGGATGACTCTGTCATCTTTTCGCTGGCTTGAAGAACTCT GCAGAGAAGCAGAGGTAGGATATGTTGACATCAGGTGCTTAACT GAAACCCGAATAGAATCCATTTATTTTGACTTCAAACTGATGTTCAGATCTGACATTTGGTGCACAACATGCAGTTGGGGGTTTTGACGTTTCTTAAGTTTTTTTCATTGAACTTGATCAGCCAAATAAGCTATTTTAGACGTGATTCAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4505#0 AAAAAAAAAAAAAGTCACCCAGAACCGCCGCTGCGCCTCCTCCTCCTTCCGCCGCCGCTG 60 consensus_4505#1 ------------------------------------------------------------ consensus_4505#0 AGCCGCTCTTGCTCCTCTATCGCTGCGCCGCTCCTGCTGGCCCGCATCACCGACGCGCCC 120 consensus_4505#1 ------------------------------------------------------------ consensus_4505#0 ATCCACACCCACACCTCGCCAGTGCTGACACCCCTGCGACATTGCCGCCGCCCCCCGCGA 180 consensus_4505#1 ------------------------------------------------------------ consensus_4505#0 TTTGCCGTTATTCCCCTAGATCGGGTGTTGCCACATCGCCGTCCACGCCTGCGGTTCCTC 240 consensus_4505#1 ------------------------------------------------------------ consensus_4505#0 CCCTCTCCCCTTCCGTGATCTCCCTCTCCACACCCACGGTTCCTCCGCTCTCCCCTTCCG 300 consensus_4505#1 ------------------------------------------------------------ consensus_4505#0 CAATCTCCCTCTCCACGCCCGCGGTTCTTCTGCTCTCCCCTTCAGACGCCATAGCCGATC 360 consensus_4505#1 ------------------------------------------------------------ consensus_4505#0 TCCTCACGGCCGTTGCCATCGCGACCACCATCGATTCCTGACCGCCAATTCGGGGTCACG 420 consensus_4505#1 ------------------------------------------------------------ consensus_4505#0 GTGACCGAGCCCCCGCCGATCGTCCCATCACGCCACCCCTTCGCCACTCACTGCCAGGTC 480 consensus_4505#1 ------------------------------------------------------------ consensus_4505#0 GTCATCCATCGTTCCTCCTCTACTCACGATCCCCAACATGGTCCATCAGAATCGTTTGTG 540 consensus_4505#1 ------------------------------------------------------------ consensus_4505#0 CTCTCCGCTCTCTCCAAGAGGACTTGGAGCTGCTACATTACGTTGACAGCGACTATGCTT 600 consensus_4505#1 ------------------------------------------------------------ consensus_4505#0 TCACCTCCCGCCTTCGTCACGGCTACTTAGCAGGAAGGTCTTCCCATGGTGCTCGATCAC 660 consensus_4505#1 ------------------------------------------------------------ consensus_4505#0 ATCGCCGCCTCCGCGCACTTGCTCTTTCCCCGACGGTCGATGCTGGCACCGTGCCGCTCC 720 consensus_4505#1 ------------------------------------------------------------ consensus_4505#0 ACCTCAGGCAGAGAAGATTAGATCGCCTCCACGGCTCCGCCATTCCGAATCCGGCCAGTT 780 consensus_4505#1 ------------------------------------------------------------ consensus_4505#0 CTGCAAATGAGGCTGCTGACATCATCGATCCGCCATCTCGCACAGCTTGATGGGCATCAT 840 consensus_4505#1 ------------------------------------------------------------ consensus_4505#0 CGCTCGCCTTTGCCTCATGACCTTTCCGTTGCCAACTATCGAAGCTGCCTAAATTTACTA 900 consensus_4505#1 ------------------------------------------------------------ consensus_4505#0 GCAGGTCATCGGTTGAAACCATCCATGTGCTGAATAGGTCTCAAGATAGGAGCAAGTTCC 960 consensus_4505#1 ------------------------------------------------------------ consensus_4505#0 GCAAGACGTGCATTGGACACAGCCGTCGCATCGCTCCTCTGCAGCAGATCCACGCACCGG 1020 consensus_4505#1 ------------------------------------------------------------ consensus_4505#0 CCACCGCCTTCACAACATGATTTGGAGGTGGAGAAGCTTGGTGTGCCCTCGACGAGTTCT 1080 consensus_4505#1 ------------------------------------------------------------ consensus_4505#0 TCCACAAATTTACTACCCTCGATGATGGCCCAGGCCGCGGCGGCTTTGTCGGCTTCTTCG 1140 consensus_4505#1 ------------------------------------------------------------ consensus_4505#0 ACAACACTAATGTCTACCTTGCCAACAATATGTGAGTTAATTTCTTCCTCTCTGCTTTCT 1200 consensus_4505#1 ------------------------------------------------------------ consensus_4505#0 GAAATACTTTTCAATGTGAACACTAGCAATGTGAATCATCTGATATTAAGAAGGTCATTA 1260 consensus_4505#1 ------------------------------------------------------------ consensus_4505#0 CTTTCAGAAATACTTCTATAAAAGCTTGTGTGCATGGATTGTTCTAAATGTTTTGTTTTG 1320 consensus_4505#1 ------------------------------------------------------------ consensus_4505#0 TAGATATATACAATTTTCATCAATACAAATTGTTAGTTAGCTCATATGCTCCTTGTTGAT 1380 consensus_4505#1 ------------------------------------------------------------ consensus_4505#0 GCAAATTTTGTCATGTAAGTACTGTATTCATGGTTGTTGGATGTAGGTATCAATTAAACC 1440 consensus_4505#1 ------------------------------------------------------------ consensus_4505#0 ATATTCTTTATTATCAACGTATAACCAATTTAAGCTCAATTTTATGGTTTGCTGCCGTTG 1500 consensus_4505#1 ------------------------------------TCNTCNAANGATANGGAGCAAGTT 24 * * * * * ** * consensus_4505#0 GTATAGAATATGCACTGTTTA-ATTAAATATATAAGTCAAAGCTGTTATCTATCAGTTTG 1559 consensus_4505#1 CCGCAAGACGTGCATTGGACACAGCCGTCGCATCGCTCC--TCTGCAGCAGATCCACGCA 82 * * **** ** * * ** ** *** *** consensus_4505#0 TATGTTTCTATTAATGATATTTTGATGCAATGGATAGGATGGCTGTTACGGAATGTAGCG 1619 consensus_4505#1 CCGGCCACCGCCT-TCACAACATGATTTGGAGGTGGAGAAGCTTGGTGTGCCCT-CGACG 140 * * * * * **** ** ** * ** * * * ** consensus_4505#0 AATTCTTGATGAAATGTACTTTCTAATATTAATTGATCAAATT----TGAGTATGGAGGC 1675 consensus_4505#1 AGTTCTTCCACAAATTTACTACCCT-CGATGATGGCCCAGGCCGCGGCGGCTTTGTCGGC 199 * ***** **** **** * * ** * ** * * ** *** consensus_4505#0 CCTTTGCTTGTCGACTAAGTG-ACAACGTCATGGCTAGGGATGCACTGGTGTTTTTATAT 1734 consensus_4505#1 TTCTTCGACAACACTAATGTCTACCTTGCCAACAATATGGATGCACTGGTGTTTTTATAT 259 ** * * ** ** * ** ** ********************** consensus_4505#0 TTGGATCTCAAGCCCTCGTATCTGGTTCTCCAGCTGAATGTGTTGATGCGATGACTGCAG 1794 consensus_4505#1 TTGGATCTCAAGCCCTCGTATCTGGTTCTCCAGCTGAATGTGTTGATGCGATGACTGCAG 319 ************************************************************ consensus_4505#0 CTTACCAATGGATGACTCTGTCATCTTTTCGCTGGCTTGAAGAACTCTG-CAGAGAAGCA 1853 consensus_4505#1 CTTACCAATGGATGACTCTGTCATCTTTTCGCTGGCTTGAAGAACTCTGGCAGAGAAGCA 379 ************************************************* ********** consensus_4505#0 GAGGTAGGATATGTTGACATCAGGTGCTTAACTGAAACCCGAATAGAATCCATTTATTTT 1913 consensus_4505#1 GAGGTAGGATATGTTGACATCAGGTGCTAACTGGAAACCCGAATAGAATCCATT-ATTTT 438 **************************** * ********************* ***** consensus_4505#0 GACTTCAAACTGATGTTCAGATCTGACATTTGGTGCACAACATGCAGTTGGGGGTTTTGA 1973 consensus_4505#1 GACTTCAAACTGATGTTCAGATCTGACATTTGGTGCACAACATGCAGTTGGGGGTTTTGA 498 ************************************************************ consensus_4505#0 CGTTTCTTAAGTTTTTTTCATTGAACTTGATCAGCCAAATAAGCTATTTTAGACGTGATT 2033 consensus_4505#1 CGTTTCTTAAGTTTTTTTCATTGAACTTGATCAGCCAAATAAGCTATTTTAGACGTGATT 558 ************************************************************ consensus_4505#0 CATGACCTGTTAGTCTGAAGCGAAAGCAGAATCAGATTCAAGAAATGCAGATGTAGAACT 2093 consensus_4505#1 CAAAA-----------AAAAAAAAAAAAAAA----------------------------- 578 ** * ** *** * ** consensus_4505#0 ATCCAATCATATCGATCGAGCACAATCTTGTCATGCCATTGCCAGACATCCATTCTTGCA 2153 consensus_4505#1 ------------------------------------------------------------ consensus_4505#0 CAAAGCAAACTCCACTCAAGATTGTTAGATAATGCATGTACATCAAAATAAAGATATATG 2213 consensus_4505#1 ------------------------------------------------------------ consensus_4505#0 CTTTTCTCTGCTGAACTGCATATTCTGGATCAATCATCCATGGTCATCCATACTCAAAAA 2273 consensus_4505#1 ------------------------------------------------------------ consensus_4505#0 TTTTGTTGGTATATCAGTCATGGAAATTACATTTTATTTTTTCTTCCTTTTCACCTAAAC 2333 consensus_4505#1 ------------------------------------------------------------ consensus_4505#0 TCACAGTCTGCATATATTTTATACGGTCCCTTCTTAATGTTTGGGGCTTAGCTATTAGTA 2393 consensus_4505#1 ------------------------------------------------------------ consensus_4505#0 TTTACAAATTCATACATGTGAGTGTTACCTCAATATGTATTATCTGATCTATACAAGTTC 2453 consensus_4505#1 ------------------------------------------------------------ consensus_4505#0 ATACTGAACTGGTATTATACAATGTACACAAAC 2486 consensus_4505#1 --------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||