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Oryza sativa
cluster # 4507 cluster # 4507       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4507#0 length = 1089 sequences # 1  
consensus_4507#1 length = 798 sequences # 2  

consensusID : consensus_4507#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1089
fasta sequence
                              [ACTCGCTCTCCGTTCACCACTCCAAACGCGTAGCGCTAGCGCCGCCCGCCGCACGATGAGCGCGGTGCCCGTCGTGTCCTCCGCGCTGGCCGGACCAGCGGTCGCGGTCGCGGTCGCCAGGCCCGCTTCCGGGTCCGTCACTCGCCTCCGTGCGCCGGCGCCCCACGGCGTGCCGGCCGGCTCCGTGCCCCTCGCGTCCGGACTTGCCAACTGCTACCGCCGCTCCGCCGCCGCCGCCCGGAGGCTTCCGATCCCGTCTGCAGCGGGGGGCGGCACAGTTGGGGATGCTTTTGTTATAGAAGACACAACAAATGTGAAATTTCCTCGAGAGATAGCTGTTCCGGGCTACACCGAGCCTTTGGTTATTCTTGGAACAGGTTACAGAGAGAAGTTCTTTCTAAAAATATATGCTGCTGCATTCTATGTTGATTGCTCAATCGGCGTTGACACTATGCGATGGAGAGAAAAGGTTGGTATTGAGACCTTTGATGCTTCCTCAGTTTTTGACTCCATTTTTAAAGCACCGGTTGTGAAATCATTGAGTATAATTCTCGTTAGAGATGTTGATGGCAAGACGTTTGTGAAGGCTCTAGATGACATTATTGCTCGTCAAATAAAAAAACCAAGTGCTGAGGAAGAACAGAGCCTGTCAACTTTCCAGAAAACCTTTCTAGGGCGTAGTCTGAAACAAGGAACAACTGTCTATCTAACTTGGCTTGAACCCTCGAAACTTCTGATCTCAATTGCAGGAAACCAAGATCCATGTCAAGTTGATGCTGAAATCACATCAGCCACTGTTAATTATGCGCTATACGATGGCTTCTTGGGTAGTTCTCCAGTATCCCCTACTCTGAGATCTTCTACTGCACTACTGCTGGAGGCTATTCTTACAAAGTGACAGAAACCGAAATCATGGTTCGCTAAGACAAAGCATGCGCTGAATCCTGATGGGTGAACAATTCTAGTTTGGCCATCAGCTCATCGCCGACTACAAATTTTCATCTTAGAGTTTATTTTTAATAATTTTTAATGTTTGGTTATATATATGAATATCTAATTAAACTCAAATACATTTCTAACATGAACATT]

[+] EMBL AK067650             [ACTCGCTCTCCGTTCACCACTCCAAACGCGTAGCGCTAGCGCCGCCCGCCGCACGATGAGCGCGGTGCCCGTCGTGTCCTCCGCGCTGGCCGGACCAGCGGTCGCGGTCGCGGTCGCCAGGCCCGCTTCCGGGTCCGTCACTCGCCTCCGTGCGCCGGCGCCCCACGGCGTGCCGGCCGGCTCCGTGCCCCTCGCGTCCGGACTTGCCAACTGCTACCGCCGCTCCGCCGCCGCCGCCCGGAGGCTTCCGATCCCGTCTGCAGCGGGGGGCGGCACAGTTGGGGATGCTTTTGTTATAGAAGACACAACAAATGTGAAATTTCCTCGAGAGATAGCTGTTCCGGGCTACACCGAGCCTTTGGTTATTCTTGGAACAGGTTACAGAGAGAAGTTCTTTCTAAAAATATATGCTGCTGCATTCTATGTTGATTGCTCAATCGGCGTTGACACTATGCGATGGAGAGAAAAGGTTGGTATTGAGACCTTTGATGCTTCCTCAGTTTTTGACTCCATTTTTAAAGCACCGGTTGTGAAATCATTGAGTATAATTCTCGTTAGAGATGTTGATGGCAAGACGTTTGTGAAGGCTCTAGATGACATTATTGCTCGTCAAATAAAAAAACCAAGTGCTGAGGAAGAACAGAGCCTGTCAACTTTCCAGAAAACCTTTCTAGGGCGTAGTCTGAAACAAGGAACAACTGTCTATCTAACTTGGCTTGAACCCTCGAAACTTCTGATCTCAATTGCAGGAAACCAAGATCCATGTCAAGTTGATGCTGAAATCACATCAGCCACTGTTAATTATGCGCTATACGATGGCTTCTTGGGTAGTTCTCCAGTATCCCCTACTCTGAGATCTTCTACTGCACTACTGCTGGAGGCTATTCTTACAAAGTGACAGAAACCGAAATCATGGTTCGCTAAGACAAAGCATGCGCTGAATCCTGATGGGTGAACAATTCTAGTTTGGCCATCAGCTCATCGCCGACTACAAATTTTCATCTTAGAGTTTATTTTTAATAATTTTTAATGTTTGGTTATATATATGAATATCTAATTAAACTCAAATACATTTCTAACATGAACATT]


>consensus_4507#0 ACTCGCTCTCCGTTCACCACTCCAAACGCGTAGCGCTAGCGCCGCCCGCCGCACGATGAG CGCGGTGCCCGTCGTGTCCTCCGCGCTGGCCGGACCAGCGGTCGCGGTCGCGGTCGCCAG GCCCGCTTCCGGGTCCGTCACTCGCCTCCGTGCGCCGGCGCCCCACGGCGTGCCGGCCGG CTCCGTGCCCCTCGCGTCCGGACTTGCCAACTGCTACCGCCGCTCCGCCGCCGCCGCCCG GAGGCTTCCGATCCCGTCTGCAGCGGGGGGCGGCACAGTTGGGGATGCTTTTGTTATAGA AGACACAACAAATGTGAAATTTCCTCGAGAGATAGCTGTTCCGGGCTACACCGAGCCTTT GGTTATTCTTGGAACAGGTTACAGAGAGAAGTTCTTTCTAAAAATATATGCTGCTGCATT CTATGTTGATTGCTCAATCGGCGTTGACACTATGCGATGGAGAGAAAAGGTTGGTATTGA GACCTTTGATGCTTCCTCAGTTTTTGACTCCATTTTTAAAGCACCGGTTGTGAAATCATT GAGTATAATTCTCGTTAGAGATGTTGATGGCAAGACGTTTGTGAAGGCTCTAGATGACAT TATTGCTCGTCAAATAAAAAAACCAAGTGCTGAGGAAGAACAGAGCCTGTCAACTTTCCA GAAAACCTTTCTAGGGCGTAGTCTGAAACAAGGAACAACTGTCTATCTAACTTGGCTTGA ACCCTCGAAACTTCTGATCTCAATTGCAGGAAACCAAGATCCATGTCAAGTTGATGCTGA AATCACATCAGCCACTGTTAATTATGCGCTATACGATGGCTTCTTGGGTAGTTCTCCAGT ATCCCCTACTCTGAGATCTTCTACTGCACTACTGCTGGAGGCTATTCTTACAAAGTGACA GAAACCGAAATCATGGTTCGCTAAGACAAAGCATGCGCTGAATCCTGATGGGTGAACAAT TCTAGTTTGGCCATCAGCTCATCGCCGACTACAAATTTTCATCTTAGAGTTTATTTTTAA TAATTTTTAATGTTTGGTTATATATATGAATATCTAATTAAACTCAAATACATTTCTAAC ATGAACATT



consensusID : consensus_4507#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 798
fasta sequence
                              [CTGTTTAAATTTAACCTTTAAGTGTGCCACATTATATTTGTTTACAGTTTGCAATTTGAATTTTAGCTCACTTCTAGGTTACAGAGAGAAGTTCTTTCTAAAAATATATGCTGCTGCATTCTATGTTGATTGCTCAATCGGTGTTGACACTATGCGATGGAGTGAAAAGGTTGGTATTGAGACCTTTGATGCTTCCTCAGTTTTTGTCTCCATTTTTAAAGCACCGGTTGTGAAATCATTGAGTATAATTCTCATTAGGGATGTTGATGGAAAGACGTTTGTGAAGGCACTAGATGACATTATTGCTCG-TCAAATAAAAAAACCA-AGTGCTGAGGAAGA-ACAGGGCCTGTC-AACTTT-CCAGAAA-ACCTTTCTAGGGCGTAGTCTCAAACAAGGAACAACTGTCTATCTAACTTGGCTTGAACCCTCGAGACTTCTGATCTCAATTTCAGGAAACCAAGATCCATGTCAAGTTGATGCTGAAATCACATCAGCCA-CTGTTAATTATGCACTATATGATGGCTTCTTCGGTAGTTCTCCAGTATCCCCTACTCTGAGATCTTCTACTGCACAACTGCTAGAAGCTATTCTTACAAAGTGAGAAACCGAAATCATGGTTCCCTAAG-ACAAAGCATGCGCTGAATCCTGATGGGTGTTTTAATTTGGCCATCAGCTCATTGCCGACTACAAATTTTCATCTTAGAGTTTATTTTTAATAATTTTTAATGTTTGATTATATATATGAATACCTAATTAGACTCAAATACATTTCAAACATGAACATTGGTGTTAAAAAAAAAA]

[-] EMBL CB631768             [CTGTTTAAATTTAACCTTTAAGTGTGCCACATTATATTTGTTTACAGTTTGCAATTTGAATTTTAGCTCACTTCTAGGTTACAGAGAGAAGTTCTTTCTAAAAATATATGCTGCTGCATTCTATGTTGATTGCTCAATCGGTGTTGACACTATGCGATGGAGTGAAAAGGTTGGTATTGAGACCTTTGATGCTTCCTCAGTTTTTGTCTCCATTTTTAAAGCACCGGTTGTGAAATCATTGAGTATAATTCTCATTAGGGATGTTGATGGAAAGACGTTTGTGAAGGCACTAGATGACATTATTGCTCG TCAAATAAAAAAACCA AGTGCTGAGGAAGA ACAGGGCCTGTC AACTTT CCAGAAA ACCTTTCTAGGGCGTAGTCTCAAACAAGGAACAACTGTCTATCTAACTTGGCTTGAACCCTCGAGACTTCTGATCTCAATTTCAGGAAACCAAGATCCATGTCAAGTTGATGCTGAAATCACATCAGCCA CTGTTAATTATGCACTATATGATGGCTTCTTCGGTAGTTCTCCAGTATCCCCTACTCTGAGATCTTCTACTGCACAACTGCTAGAAGCTATTCTTACAAAGTGAGAAACCGAAATCATGGTTCCCTAAG ACAAAGCATGCGCTGAATCCTGATGGGTGTTTTAATTTGGCCATCAGCTCATTGCCGACTACAAATTTTCATCTTAGAGTTTATTTTTAATAATTTTTAATGTTTGATTATATATATGAATACCTAATTAGACTCAAATACATTTCAAACATGAACATTGGTG            ]
[+] EMBL BI813198             [                                                                                                                                                                                                                                                                               AAGACCTTT TGAAGCCACTAGATCACATTATTGCTCGTTCAAATAAAAAACCCACAGT CTGAGGAAGACACA GGCCTGTCAAACTTTCCCAGAAACACCTTTCTAGGGCGTATTCTCAAACAAGGAACAACTGTCTATCTAACTTGGCTTGAACCCTCGAGACTTCTGATCTCAATTTCAGGAAACCAAGATCCATGTCAAGTTGAT CTGAAATCACATCA CCACCTGTTAATTAT CACTATATGATGGCTTCTTCGGTAGTTCTCCAGTATCCCCTACTCTGAGATCTTCTACTGCACAACTGCTAGAAGCTATTCTTACAAAGTGAGAAACCGAAATCATGGTTCCCTAAGCACCAAGCATGCGCTGAATCCTGATGGGTGTTCTAATTTGGCCATCAGCTCATTGCCGACTACAAATTTTCATCTTAGAGTTTATTTTTAATAATTTTTAATGTTTGATTATATATATGAATACCTAATTAAACTCAAATACATTTCCAACCCGAACATTGGTGTTAAAAAAAAAA]


>consensus_4507#1 CTGTTTAAATTTAACCTTTAAGTGTGCCACATTATATTTGTTTACAGTTTGCAATTTGAA TTTTAGCTCACTTCTAGGTTACAGAGAGAAGTTCTTTCTAAAAATATATGCTGCTGCATT CTATGTTGATTGCTCAATCGGTGTTGACACTATGCGATGGAGTGAAAAGGTTGGTATTGA GACCTTTGATGCTTCCTCAGTTTTTGTCTCCATTTTTAAAGCACCGGTTGTGAAATCATT GAGTATAATTCTCATTAGGGATGTTGATGGAAAGACGTTTGTGAAGGCACTAGATGACAT TATTGCTCGTCAAATAAAAAAACCAAGTGCTGAGGAAGAACAGGGCCTGTCAACTTTCCA GAAAACCTTTCTAGGGCGTAGTCTCAAACAAGGAACAACTGTCTATCTAACTTGGCTTGA ACCCTCGAGACTTCTGATCTCAATTTCAGGAAACCAAGATCCATGTCAAGTTGATGCTGA AATCACATCAGCCACTGTTAATTATGCACTATATGATGGCTTCTTCGGTAGTTCTCCAGT ATCCCCTACTCTGAGATCTTCTACTGCACAACTGCTAGAAGCTATTCTTACAAAGTGAGA AACCGAAATCATGGTTCCCTAAGACAAAGCATGCGCTGAATCCTGATGGGTGTTTTAATT TGGCCATCAGCTCATTGCCGACTACAAATTTTCATCTTAGAGTTTATTTTTAATAATTTT TAATGTTTGATTATATATATGAATACCTAATTAGACTCAAATACATTTCAAACATGAACA TTGGTGTTAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4507#0      ACTCGCTCTCCGTTCACCACTCCAAACGCGTAGCGCTAGCGCCGCCCGCCGCACGATGAG 60
consensus_4507#1      ------------------------------------------------------------
                                                                                  

consensus_4507#0      CGCGGTGCCCGTCGTGTCCTCCGCGCTGGCCGGACCAGCGGTCGCGGTCGCGGTCGCCAG 120
consensus_4507#1      ------------------------------------------------------------
                                                                                  

consensus_4507#0      GCCCGCTTCCGGGTCCGTCACTCGCCTCCGTGCGCCGGCGCCCCACGGCGTGCCGGCCGG 180
consensus_4507#1      ------------------------------------------------------------
                                                                                  

consensus_4507#0      CTCCGTGCCCCTCGCGTCCGGACTTGCCAACTGCTACCGCCGCTCCGCCGCCGCCGCCCG 240
consensus_4507#1      ------------------------------------------------------------
                                                                                  

consensus_4507#0      GAGGCTTCCGATCCCGTCTGCAGCGGGGGGCGGCACAGTTGGGGATGCTTTTGTTATAGA 300
consensus_4507#1      --------------------------------------------------CTGTTTAAAT 10
                                                                         ****  *  

consensus_4507#0      AGACACAACAAATGTGAAATTTCCTCGAGAGATAGCTGTTC-CGGGCTACA--CCGAGCC 357
consensus_4507#1      TTAACCTTTAAGTGTGCCACATT--------ATATTTGTTTACAGTTTGCAATTTGAATT 62
                        *  *   ** ****  *  *         ***  ****  * *  * **    **   

consensus_4507#0      TTTGGTTATTCTTGGAACAGGTTACAGAGAGAAGTTCTTTCTAAAAATATATGCTGCTGC 417
consensus_4507#1      TTAGCTCACTTCT-----AGGTTACAGAGAGAAGTTCTTTCTAAAAATATATGCTGCTGC 117
                      ** * * * *  *     ******************************************

consensus_4507#0      ATTCTATGTTGATTGCTCAATCGGCGTTGACACTATGCGATGGAGAGAAAAGGTTGGTAT 477
consensus_4507#1      ATTCTATGTTGATTGCTCAATCGGTGTTGACACTATGCGATGGAGTGAAAAGGTTGGTAT 177
                      ************************ ******************** **************

consensus_4507#0      TGAGACCTTTGATGCTTCCTCAGTTTTTGACTCCATTTTTAAAGCACCGGTTGTGAAATC 537
consensus_4507#1      TGAGACCTTTGATGCTTCCTCAGTTTTTGTCTCCATTTTTAAAGCACCGGTTGTGAAATC 237
                      ***************************** ******************************

consensus_4507#0      ATTGAGTATAATTCTCGTTAGAGATGTTGATGGCAAGACGTTTGTGAAGGCTCTAGATGA 597
consensus_4507#1      ATTGAGTATAATTCTCATTAGGGATGTTGATGGAAAGACGTTTGTGAAGGCACTAGATGA 297
                      **************** **** *********** ***************** ********

consensus_4507#0      CATTATTGCTCGTCAAATAAAAAAACCAAGTGCTGAGGAAGAACAGAGCCTGTCAACTTT 657
consensus_4507#1      CATTATTGCTCGTCAAATAAAAAAACCAAGTGCTGAGGAAGAACAGGGCCTGTCAACTTT 357
                      ********************************************** *************

consensus_4507#0      CCAGAAAACCTTTCTAGGGCGTAGTCTGAAACAAGGAACAACTGTCTATCTAACTTGGCT 717
consensus_4507#1      CCAGAAAACCTTTCTAGGGCGTAGTCTCAAACAAGGAACAACTGTCTATCTAACTTGGCT 417
                      *************************** ********************************

consensus_4507#0      TGAACCCTCGAAACTTCTGATCTCAATTGCAGGAAACCAAGATCCATGTCAAGTTGATGC 777
consensus_4507#1      TGAACCCTCGAGACTTCTGATCTCAATTTCAGGAAACCAAGATCCATGTCAAGTTGATGC 477
                      *********** **************** *******************************

consensus_4507#0      TGAAATCACATCAGCCACTGTTAATTATGCGCTATACGATGGCTTCTTGGGTAGTTCTCC 837
consensus_4507#1      TGAAATCACATCAGCCACTGTTAATTATGCACTATATGATGGCTTCTTCGGTAGTTCTCC 537
                      ****************************** ***** *********** ***********

consensus_4507#0      AGTATCCCCTACTCTGAGATCTTCTACTGCACTACTGCTGGAGGCTATTCTTACAAAGTG 897
consensus_4507#1      AGTATCCCCTACTCTGAGATCTTCTACTGCACAACTGCTAGAAGCTATTCTTACAAAGTG 597
                      ******************************** ****** ** *****************

consensus_4507#0      ACAGAAACCGAAATCATGGTTCGCTAAGACAAAGCATGCGCTGAATCCTGATGGGTGAAC 957
consensus_4507#1      A--GAAACCGAAATCATGGTTCCCTAAGACAAAGCATGCGCTGAATCCTGATGGGTG--- 652
                      *  ******************* **********************************   

consensus_4507#0      AATTCTAGTTTGGCCATCAGCTCATCGCCGACTACAAATTTTCATCTTAGAGTTTATTTT 1017
consensus_4507#1      --TTTTAATTTGGCCATCAGCTCATTGCCGACTACAAATTTTCATCTTAGAGTTTATTTT 710
                        ** ** ***************** **********************************

consensus_4507#0      TAATAATTTTTAATGTTTGGTTATATATATGAATATCTAATTAAACTCAAATACATTTCT 1077
consensus_4507#1      TAATAATTTTTAATGTTTGATTATATATATGAATACCTAATTAGACTCAAATACATTTCA 770
                      ******************* *************** ******* *************** 

consensus_4507#0      AACATGAACATT---------------- 1089
consensus_4507#1      AACATGAACATTGGTGTTAAAAAAAAAA 798
                      ************                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)