These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4507#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1089 fasta sequence [ACTCGCTCTCCGTTCACCACTCCAAACGCGTAGCGCTAGCGCCGCCCGCCGCACGATGAGCGCGGTGCCCGTCGTGTCCTCCGCGCTGGCCGGACCAGCGGTCGCGGTCGCGGTCGCCAGGCCCGCTTCCGGGTCCGTCACTCGCCTCCGTGCGCCGGCGCCCCACGGCGTGCCGGCCGGCTCCGTGCCCCTCGCGTCCGGACTTGCCAACTGCTACCGCCGCTCCGCCGCCGCCGCCCGGAGGCTTCCGATCCCGTCTGCAGCGGGGGGCGGCACAGTTGGGGATGCTTTTGTTATAGAAGACACAACAAATGTGAAATTTCCTCGAGAGATAGCTGTTCCGGGCTACACCGAGCCTTTGGTTATTCTTGGAACAGGTTACAGAGAGAAGTTCTTTCTAAAAATATATGCTGCTGCATTCTATGTTGATTGCTCAATCGGCGTTGACACTATGCGATGGAGAGAAAAGGTTGGTATTGAGACCTTTGATGCTTCCTCAGTTTTTGACTCCATTTTTAAAGCACCGGTTGTGAAATCATTGAGTATAATTCTCGTTAGAGATGTTGATGGCAAGACGTTTGTGAAGGCTCTAGATGACATTATTGCTCGTCAAATAAAAAAACCAAGTGCTGAGGAAGAACAGAGCCTGTCAACTTTCCAGAAAACCTTTCTAGGGCGTAGTCTGAAACAAGGAACAACTGTCTATCTAACTTGGCTTGAACCCTCGAAACTTCTGATCTCAATTGCAGGAAACCAAGATCCATGTCAAGTTGATGCTGAAATCACATCAGCCACTGTTAATTATGCGCTATACGATGGCTTCTTGGGTAGTTCTCCAGTATCCCCTACTCTGAGATCTTCTACTGCACTACTGCTGGAGGCTATTCTTACAAAGTGACAGAAACCGAAATCATGGTTCGCTAAGACAAAGCATGCGCTGAATCCTGATGGGTGAACAATTCTAGTTTGGCCATCAGCTCATCGCCGACTACAAATTTTCATCTTAGAGTTTATTTTTAATAATTTTTAATGTTTGGTTATATATATGAATATCTAATTAAACTCAAATACATTTCTAACATGAACATT] [+] EMBL AK067650 [ACTCGCTCTCCGTTCACCACTCCAAACGCGTAGCGCTAGCGCCGCCCGCCGCACGATGAGCGCGGTGCCCGTCGTGTCCTCCGCGCTGGCCGGACCAGCGGTCGCGGTCGCGGTCGCCAGGCCCGCTTCCGGGTCCGTCACTCGCCTCCGTGCGCCGGCGCCCCACGGCGTGCCGGCCGGCTCCGTGCCCCTCGCGTCCGGACTTGCCAACTGCTACCGCCGCTCCGCCGCCGCCGCCCGGAGGCTTCCGATCCCGTCTGCAGCGGGGGGCGGCACAGTTGGGGATGCTTTTGTTATAGAAGACACAACAAATGTGAAATTTCCTCGAGAGATAGCTGTTCCGGGCTACACCGAGCCTTTGGTTATTCTTGGAACAGGTTACAGAGAGAAGTTCTTTCTAAAAATATATGCTGCTGCATTCTATGTTGATTGCTCAATCGGCGTTGACACTATGCGATGGAGAGAAAAGGTTGGTATTGAGACCTTTGATGCTTCCTCAGTTTTTGACTCCATTTTTAAAGCACCGGTTGTGAAATCATTGAGTATAATTCTCGTTAGAGATGTTGATGGCAAGACGTTTGTGAAGGCTCTAGATGACATTATTGCTCGTCAAATAAAAAAACCAAGTGCTGAGGAAGAACAGAGCCTGTCAACTTTCCAGAAAACCTTTCTAGGGCGTAGTCTGAAACAAGGAACAACTGTCTATCTAACTTGGCTTGAACCCTCGAAACTTCTGATCTCAATTGCAGGAAACCAAGATCCATGTCAAGTTGATGCTGAAATCACATCAGCCACTGTTAATTATGCGCTATACGATGGCTTCTTGGGTAGTTCTCCAGTATCCCCTACTCTGAGATCTTCTACTGCACTACTGCTGGAGGCTATTCTTACAAAGTGACAGAAACCGAAATCATGGTTCGCTAAGACAAAGCATGCGCTGAATCCTGATGGGTGAACAATTCTAGTTTGGCCATCAGCTCATCGCCGACTACAAATTTTCATCTTAGAGTTTATTTTTAATAATTTTTAATGTTTGGTTATATATATGAATATCTAATTAAACTCAAATACATTTCTAACATGAACATT] consensusID : consensus_4507#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 798 fasta sequence [CTGTTTAAATTTAACCTTTAAGTGTGCCACATTATATTTGTTTACAGTTTGCAATTTGAATTTTAGCTCACTTCTAGGTTACAGAGAGAAGTTCTTTCTAAAAATATATGCTGCTGCATTCTATGTTGATTGCTCAATCGGTGTTGACACTATGCGATGGAGTGAAAAGGTTGGTATTGAGACCTTTGATGCTTCCTCAGTTTTTGTCTCCATTTTTAAAGCACCGGTTGTGAAATCATTGAGTATAATTCTCATTAGGGATGTTGATGGAAAGACGTTTGTGAAGGCACTAGATGACATTATTGCTCG-TCAAATAAAAAAACCA-AGTGCTGAGGAAGA-ACAGGGCCTGTC-AACTTT-CCAGAAA-ACCTTTCTAGGGCGTAGTCTCAAACAAGGAACAACTGTCTATCTAACTTGGCTTGAACCCTCGAGACTTCTGATCTCAATTTCAGGAAACCAAGATCCATGTCAAGTTGATGCTGAAATCACATCAGCCA-CTGTTAATTATGCACTATATGATGGCTTCTTCGGTAGTTCTCCAGTATCCCCTACTCTGAGATCTTCTACTGCACAACTGCTAGAAGCTATTCTTACAAAGTGAGAAACCGAAATCATGGTTCCCTAAG-ACAAAGCATGCGCTGAATCCTGATGGGTGTTTTAATTTGGCCATCAGCTCATTGCCGACTACAAATTTTCATCTTAGAGTTTATTTTTAATAATTTTTAATGTTTGATTATATATATGAATACCTAATTAGACTCAAATACATTTCAAACATGAACATTGGTGTTAAAAAAAAAA] [-] EMBL CB631768 [CTGTTTAAATTTAACCTTTAAGTGTGCCACATTATATTTGTTTACAGTTTGCAATTTGAATTTTAGCTCACTTCTAGGTTACAGAGAGAAGTTCTTTCTAAAAATATATGCTGCTGCATTCTATGTTGATTGCTCAATCGGTGTTGACACTATGCGATGGAGTGAAAAGGTTGGTATTGAGACCTTTGATGCTTCCTCAGTTTTTGTCTCCATTTTTAAAGCACCGGTTGTGAAATCATTGAGTATAATTCTCATTAGGGATGTTGATGGAAAGACGTTTGTGAAGGCACTAGATGACATTATTGCTCG TCAAATAAAAAAACCA AGTGCTGAGGAAGA ACAGGGCCTGTC AACTTT CCAGAAA ACCTTTCTAGGGCGTAGTCTCAAACAAGGAACAACTGTCTATCTAACTTGGCTTGAACCCTCGAGACTTCTGATCTCAATTTCAGGAAACCAAGATCCATGTCAAGTTGATGCTGAAATCACATCAGCCA CTGTTAATTATGCACTATATGATGGCTTCTTCGGTAGTTCTCCAGTATCCCCTACTCTGAGATCTTCTACTGCACAACTGCTAGAAGCTATTCTTACAAAGTGAGAAACCGAAATCATGGTTCCCTAAG ACAAAGCATGCGCTGAATCCTGATGGGTGTTTTAATTTGGCCATCAGCTCATTGCCGACTACAAATTTTCATCTTAGAGTTTATTTTTAATAATTTTTAATGTTTGATTATATATATGAATACCTAATTAGACTCAAATACATTTCAAACATGAACATTGGTG ] [+] EMBL BI813198 [ AAGACCTTT TGAAGCCACTAGATCACATTATTGCTCGTTCAAATAAAAAACCCACAGT CTGAGGAAGACACA GGCCTGTCAAACTTTCCCAGAAACACCTTTCTAGGGCGTATTCTCAAACAAGGAACAACTGTCTATCTAACTTGGCTTGAACCCTCGAGACTTCTGATCTCAATTTCAGGAAACCAAGATCCATGTCAAGTTGAT CTGAAATCACATCA CCACCTGTTAATTAT CACTATATGATGGCTTCTTCGGTAGTTCTCCAGTATCCCCTACTCTGAGATCTTCTACTGCACAACTGCTAGAAGCTATTCTTACAAAGTGAGAAACCGAAATCATGGTTCCCTAAGCACCAAGCATGCGCTGAATCCTGATGGGTGTTCTAATTTGGCCATCAGCTCATTGCCGACTACAAATTTTCATCTTAGAGTTTATTTTTAATAATTTTTAATGTTTGATTATATATATGAATACCTAATTAAACTCAAATACATTTCCAACCCGAACATTGGTGTTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4507#0 ACTCGCTCTCCGTTCACCACTCCAAACGCGTAGCGCTAGCGCCGCCCGCCGCACGATGAG 60 consensus_4507#1 ------------------------------------------------------------ consensus_4507#0 CGCGGTGCCCGTCGTGTCCTCCGCGCTGGCCGGACCAGCGGTCGCGGTCGCGGTCGCCAG 120 consensus_4507#1 ------------------------------------------------------------ consensus_4507#0 GCCCGCTTCCGGGTCCGTCACTCGCCTCCGTGCGCCGGCGCCCCACGGCGTGCCGGCCGG 180 consensus_4507#1 ------------------------------------------------------------ consensus_4507#0 CTCCGTGCCCCTCGCGTCCGGACTTGCCAACTGCTACCGCCGCTCCGCCGCCGCCGCCCG 240 consensus_4507#1 ------------------------------------------------------------ consensus_4507#0 GAGGCTTCCGATCCCGTCTGCAGCGGGGGGCGGCACAGTTGGGGATGCTTTTGTTATAGA 300 consensus_4507#1 --------------------------------------------------CTGTTTAAAT 10 **** * consensus_4507#0 AGACACAACAAATGTGAAATTTCCTCGAGAGATAGCTGTTC-CGGGCTACA--CCGAGCC 357 consensus_4507#1 TTAACCTTTAAGTGTGCCACATT--------ATATTTGTTTACAGTTTGCAATTTGAATT 62 * * ** **** * * *** **** * * * ** ** consensus_4507#0 TTTGGTTATTCTTGGAACAGGTTACAGAGAGAAGTTCTTTCTAAAAATATATGCTGCTGC 417 consensus_4507#1 TTAGCTCACTTCT-----AGGTTACAGAGAGAAGTTCTTTCTAAAAATATATGCTGCTGC 117 ** * * * * * ****************************************** consensus_4507#0 ATTCTATGTTGATTGCTCAATCGGCGTTGACACTATGCGATGGAGAGAAAAGGTTGGTAT 477 consensus_4507#1 ATTCTATGTTGATTGCTCAATCGGTGTTGACACTATGCGATGGAGTGAAAAGGTTGGTAT 177 ************************ ******************** ************** consensus_4507#0 TGAGACCTTTGATGCTTCCTCAGTTTTTGACTCCATTTTTAAAGCACCGGTTGTGAAATC 537 consensus_4507#1 TGAGACCTTTGATGCTTCCTCAGTTTTTGTCTCCATTTTTAAAGCACCGGTTGTGAAATC 237 ***************************** ****************************** consensus_4507#0 ATTGAGTATAATTCTCGTTAGAGATGTTGATGGCAAGACGTTTGTGAAGGCTCTAGATGA 597 consensus_4507#1 ATTGAGTATAATTCTCATTAGGGATGTTGATGGAAAGACGTTTGTGAAGGCACTAGATGA 297 **************** **** *********** ***************** ******** consensus_4507#0 CATTATTGCTCGTCAAATAAAAAAACCAAGTGCTGAGGAAGAACAGAGCCTGTCAACTTT 657 consensus_4507#1 CATTATTGCTCGTCAAATAAAAAAACCAAGTGCTGAGGAAGAACAGGGCCTGTCAACTTT 357 ********************************************** ************* consensus_4507#0 CCAGAAAACCTTTCTAGGGCGTAGTCTGAAACAAGGAACAACTGTCTATCTAACTTGGCT 717 consensus_4507#1 CCAGAAAACCTTTCTAGGGCGTAGTCTCAAACAAGGAACAACTGTCTATCTAACTTGGCT 417 *************************** ******************************** consensus_4507#0 TGAACCCTCGAAACTTCTGATCTCAATTGCAGGAAACCAAGATCCATGTCAAGTTGATGC 777 consensus_4507#1 TGAACCCTCGAGACTTCTGATCTCAATTTCAGGAAACCAAGATCCATGTCAAGTTGATGC 477 *********** **************** ******************************* consensus_4507#0 TGAAATCACATCAGCCACTGTTAATTATGCGCTATACGATGGCTTCTTGGGTAGTTCTCC 837 consensus_4507#1 TGAAATCACATCAGCCACTGTTAATTATGCACTATATGATGGCTTCTTCGGTAGTTCTCC 537 ****************************** ***** *********** *********** consensus_4507#0 AGTATCCCCTACTCTGAGATCTTCTACTGCACTACTGCTGGAGGCTATTCTTACAAAGTG 897 consensus_4507#1 AGTATCCCCTACTCTGAGATCTTCTACTGCACAACTGCTAGAAGCTATTCTTACAAAGTG 597 ******************************** ****** ** ***************** consensus_4507#0 ACAGAAACCGAAATCATGGTTCGCTAAGACAAAGCATGCGCTGAATCCTGATGGGTGAAC 957 consensus_4507#1 A--GAAACCGAAATCATGGTTCCCTAAGACAAAGCATGCGCTGAATCCTGATGGGTG--- 652 * ******************* ********************************** consensus_4507#0 AATTCTAGTTTGGCCATCAGCTCATCGCCGACTACAAATTTTCATCTTAGAGTTTATTTT 1017 consensus_4507#1 --TTTTAATTTGGCCATCAGCTCATTGCCGACTACAAATTTTCATCTTAGAGTTTATTTT 710 ** ** ***************** ********************************** consensus_4507#0 TAATAATTTTTAATGTTTGGTTATATATATGAATATCTAATTAAACTCAAATACATTTCT 1077 consensus_4507#1 TAATAATTTTTAATGTTTGATTATATATATGAATACCTAATTAGACTCAAATACATTTCA 770 ******************* *************** ******* *************** consensus_4507#0 AACATGAACATT---------------- 1089 consensus_4507#1 AACATGAACATTGGTGTTAAAAAAAAAA 798 ************ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||