These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4510#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 420 fasta sequence [ATCATATCATATCATGAACAGGGGGGAGGGAAAGCTACAAATCATGGATGGGCATGGACAGGGGATTTCAGTTTCCCCCCCCTCCCACAAATTTGACATCACTCACATGATCACCAATCAGCTCACTAATTAACACTAAACAACAAGTTAAAAAAATCAAAAAAAAAATAAAACATGGATTAATTAATTAAACAAAAAAAAAAAAGGATTAAGCCTCAATTTGATGGAACAGTAATAAAACAATGCAATGCAATGCAGCTAAACTAAAAATGAGGCTTTTGTTGGCAACGGATTTCTTGATGGGTTGGGTTACTGGAACCGGAGGGGGGGCGGGGGGGGCCCCAAACTCCCCCCCCCGGGGTCGGGGTGCGGGGGGGGCCCCCCCTCCTCCTCCTCTTTTCCGGGGGGGGCGGCGGGGGA] [+] EMBL CB646019 [ATCATATCATATCATGAACAGGGGGGAGGGAAAGCTACAAATCATGGATGGGCATGGACAGGGGATTTCAGTTTCCCCCCCCTCCCACAAATTTGACATCACTCACATGATCACCAATCAGCTCACTAATTAACACTAAACAACAAGTTAAAAAAATCAAAAAAAAAATAAAACATGGATTAATTAATTAAACAAAAAAAAAAAAGGATTAAGCCTCAATTTGATGGAACAGTAATAAAACAATGCAATGCAATGCAGCTAAACTAAAAATGAGGCTTTTGTTGGCAACGGATTTCTTGATGGGTTGGGTTACTGGAACCGGAGGGGGGGCGGGGGGGGCCCCAAACTCCCCCCCCCGGGGTCGGGGTGCGGGGGGGGCCCCCCCTCCTCCTCCTCTTTTCCGGGGGGGGCGGCGGGGGA] consensusID : consensus_4510#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 392 fasta sequence [TGAAAAGCTACAGTCATGATGTGCCTGGACAGNNCCTCCACAAATTTGACATCACTCACATGATCACCAATCAGCTCACNNAACAGTAGAGAAATAAGAGAAAATAAAAACATGGATTAATTAATTAAACAGAAGAGAGAGAGAGGATTGAGCATCAATTTGATGGAACAGTAGTAGAGCAATGCAATGCAATGCAGCTAAGCTAGAAATGAGCCTTAATTTTGTTGTCAATGGATTTCTTGATGTGTTGGGTTACTGGAGCCGGAGGTGNGTGCGGCTGTGCGGCTGTGCGGCGAGCTCGCGCCGCCGGGGTCGGGGTGCGGCGGCTGCGCCGTCGTCGTCGTCTCCGGCGGCGTGCGGCGGAGGAGGGGTGGACGGTGGCGGCGGGCGAA] [-] EMBL BQ906472 [TGAAAAGCTACAGTCATGATGTGCCTGGACAGNNCCTCCACAAATTTGACATCACTCACATGATCACCAATCAGCTCACNNAACAGTAGAGAAATAAGAGAAAATAAAAACATGGATTAATTAATTAAACAGAAGAGAGAGAGAGGATTGAGCATCAATTTGATGGAACAGTAGTAGAGCAATGCAATGCAATGCAGCTAAGCTAGAAATGAGCCTTAATTTTGTTGTCAATGGATTTCTTGATGTGTTGGGTTACTGGAGCCGGAGGTGNGTGCGGCTGTGCGGCTGTGCGGCGAGCTCGCGCCGCCGGGGTCGGGGTGCGGCGGCTGCGCCGTCGTCGTCGTCTCCGGCGGCGTGCGGCGGAGGAGGGGTGGACGGTGGCGGCGGGCGAA] consensusID : consensus_4510#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 334 fasta sequence [TCAAGAGAAAAATAAAACATGGATTAATTAATTAAACAAGAGAGAGAGAGGATTAAGCATCAATTTGATGGAACAGTAGTAGAGCAATGCAATGCAATGCAGCTAAGCTAGAAATGAGGCTTTTGTTGTCAACGGATTTCTTGATGTGTTGGGTTACTGGAGCCGGAGGTGGTGCGGCGGCGGCGGCGAGCTCGCGCCGCCGGGGTCGGGGTGCGGCGGCGGCGCGCCGTCGTCGTCGTCGTCTCCGGCGGCGGCGGCGGGGGAGGGGTGGAGGTGGCGGCGGGCGAGGGTGTGCTTGTTGTTGTGCATCCAGACCTTGAGGACGCGGCGCTTG] [-] EMBL CF325172 [TCAAGAGAAAAATAAAACATGGATTAATTAATTAAACAAGAGAGAGAGAGGATTAAGCATCAATTTGATGGAACAGTAGTAGAGCAATGCAATGCAATGCAGCTAAGCTAGAAATGAGGCTTTTGTTGTCAACGGATTTCTTGATGTGTTGGGTTACTGGAGCCGGAGGTGGTGCGGCGGCGGCGGCGAGCTCGCGCCGCCGGGGTCGGGGTGCGGCGGCGGCGCGCCGTCGTCGTCGTCGTCTCCGGCGGCGGCGGCGGGGGAGGGGTGGAGGTGGCGGCGGGCGAGGGTGTGCTTGTTGTTGTGCATCCAGACCTTGAGGACGCGGCGCTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4510#1 --------------------------------------------TGAAAAGCTACAGTCA 16 consensus_4510#2 ------------------------------------------------------------ consensus_4510#0 ATCATATCATATCATGAACAGGGGGGAGGGAAAGCTACAAATCATGGATGGGCATGGACA 60 consensus_4510#1 TGATGTGCCTGGACAGNNCCTC---CACAAATTTGACATCACTCACATGATCACCAATCA 73 consensus_4510#2 ------------------------------------------------------------ consensus_4510#0 GGGGATTTCAGTTTCCCCCCCCTCCCACAAATTTGACATCACTCACATGATCACCAATCA 120 consensus_4510#1 GCTCACNNAACAGTA----------------GAGAAATAAGAGAAAATAAAAACATGGAT 117 consensus_4510#2 ------------------------------------TCAAGAGAAAAATAAAACATGGAT 24 consensus_4510#0 GCTCACTAATTAACACTAAACAACAAGTTAAAAAAATCAAAAAAAAAATAAAACATGGAT 180 ** * **** *********** consensus_4510#1 TAATTAATTAAACAGAAGAGAGAGAGAGGATTGAGCATCAATTTGATGGAACAGTAGTAG 177 consensus_4510#2 TAATTAATTAAACA--AGAGAGAGAGAGGATTAAGCATCAATTTGATGGAACAGTAGTAG 82 consensus_4510#0 TAATTAATTAAACA--AAAAAAAAAAAGGATTAAGCCTCAATTTGATGGAACAGTAATAA 238 ************** * * * * * ****** *** ******************* ** consensus_4510#1 AGCAATGCAATGCAATGCAGCTAAGCTAGAAATGAGCCTTAATTTTGTTGTCAATGGATT 237 consensus_4510#2 AGCAATGCAATGCAATGCAGCTAAGCTAGAAATGAGGCTT----TTGTTGTCAACGGATT 138 consensus_4510#0 AACAATGCAATGCAATGCAGCTAAACTAAAAATGAGGCTT----TTGTTGGCAACGGATT 294 * ********************** *** ******* *** ****** *** ***** consensus_4510#1 TCTTGATGTGTTGGGTTACTGGAGCCGGAGGTGNGTGCGGCTGTGCGGCTGTGCGGCGAG 297 consensus_4510#2 TCTTGATGTGTTGGGTTACTGGAGCCGGAGGTGG-TGCGGCGGCG-------GCGGCGAG 190 consensus_4510#0 TCTTGATGGGTTGGGTTACTGGAACCGGAGGGGG-GGCGGGGGGG-------GCCCCAAA 346 ******** ************** ******* * **** * * ** * * consensus_4510#1 CTCGCGCCGCCGGGGTCGGGGTGCGGCGGCTGCGC-----CGTCGTCGTCGTCTCCGGCG 352 consensus_4510#2 CTCGCGCCGCCGGGGTCGGGGTGCGGCGGCGGCGCGCCGTCGTCGTCGTCGTCTCCGGCG 250 consensus_4510#0 CTCCCCCCCCCGGGGTCGGGGTGCGGGGGGGGCCCCCCCTCCTCCTCCTCTTTTCCGGGG 406 *** * ** ***************** ** ** * * ** ** ** * ***** * consensus_4510#1 GCGTGCGGCGGAGGAGGGGTGGACGGTGGCGGCGGGCGAA-------------------- 392 consensus_4510#2 GCG-GCGGCGGGGGAGGGGTGGA-GGTGGCGGCGGGCGAGGGTGTGCTTGTTGTTGTGCA 308 consensus_4510#0 GGG-GCGGCGGGGGA--------------------------------------------- 420 * * ******* *** consensus_4510#1 -------------------------- consensus_4510#2 TCCAGACCTTGAGGACGCGGCGCTTG 334 consensus_4510#0 -------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||