|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4513#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1439 fasta sequence
[GTCAATTTGAGCCGACCACCTCTCTCGCAGAACTACATGCAGCTGTTTGGTGTCCTGCTCAGTAATGCTACCTGGGACCGTCCACCGTGTGTCCCTGCCTTGGTTCGGTTGCTGAGAGCATTCCTTCGGAAAATTCCAAATGAGCTTAACCAAGAGGGCAGGCTACCGAATATCTTAGTGATATTCCGCAGTCTCCTTTCGCGGAGCAGTACTGAAGATTCTGCCTTCTACATGCTTAACACACTTGTGGAAAATGTGAGTTTTGACATCATGAATCCTCACATAAATGAGATATGGAGTGCTTTGTTTACTCGACTACAGACAAGGCAGGCAGTGAAGTTTGTGAATTCTCTTGTGGTCTTCATGTCCTTGGTGGTGGTTAAATATGGACCAGGTGTTCTTGTCAGTTCTGTCGATGCAATTCAGCCAAATATTTTCATGACAATCCTTCAGCGCTTTTGGATTCCCAATCTTAAATTCATCAAAGGGACTGTTGAAGTTAAGCTGACATCAGTTGCATCAACGAAGTTGATCTGTGAATCTGCACTGCTGTTGGATGGTGCAGCAGCCCAAACTTGGGGCAAATTGCTTGACAGTATTGTTGCATTGCTGTCCAGAACGGATCAAGATGGGGCACAACAAGATCAGAATGATGGTGCTGATGCAGATAGTCAGAGGACATCAGGTTATTCTGTCTCATTTGTACGTCTTCAATATGCTGGAAAGAGTGAAGATGATCTGTTGAAAGAGGTAAATGATCCAAAGCAGTTTCTGGTCACCTCCTTGGCTACTCTTTCTGCGCAATCTCCAGGGAGATTTGGTCCTATCATTGAGCAGAACGTGGATCCTGCAAACAAAGGCGCTCTTATTCAACTTTGTGCAGCTTACAATACCAACATTGTCTAGGAGCCAATGGCTTTGCTGTAAGGCATTTGCATTGTTTCCATGGGGTTTTGTCAAAGGATGTCTCAGGGGAGTCTATCGGTCGGTCGGTCTATCGGGTCAAGCTGGTCTTCGGTTTCATCCTTGCAATATTTCTGGCATGTGTAGGTTGGTCTTGGGAGAGGAAGGATGTCGAAATCATATAGTGGTGGAAAAACATGAACATTGTGGTGGAGGATGTCTCTTTGATTGGAATTTGGAATTTTCTTTTTTGGTGTGGAAGAGGTTTGTTTCCCCCGGAAAACATGAACATTGTGGAGGATACCCCGAGAATATTGCCAGCGTAGGCATGTGCCATCCTGGTGGAACTTTGCTGTAATTTTTTTGCCCTTGTTGGCTGAATGCCTTGCTCTGGCGTAGGAAATGGTATATGGCGTGGGAGTATATTGTCATCGGTCATCACCCTTTGTTAGGTCGGGTTACAAAAAATATTGCGAACCTCGATTGGAGCTCGCGATCCTGCTGCCATTTGCTCTGTTTTTTGAATGCATTGAGCC]
[+] EMBL AK105595 [GTCAATTTGAGCCGACCACCTCTCTCGCAGAACTACATGCAGCTGTTTGGTGTCCTGCTCAGTAATGCTACCTGGGACCGTCCACCGTGTGTCCCTGCCTTGGTTCGGTTGCTGAGAGCATTCCTTCGGAAAATTCCAAATGAGCTTAACCAAGAGGGCAGGCTACCGAATATCTTAGTGATATTCCGCAGTCTCCTTTCGCGGAGCAGTACTGAAGATTCTGCCTTCTACATGCTTAACACACTTGTGGAAAATGTGAGTTTTGACATCATGAATCCTCACATAAATGAGATATGGAGTGCTTTGTTTACTCGACTACAGACAAGGCAGGCAGTGAAGTTTGTGAATTCTCTTGTGGTCTTCATGTCCTTGGTGGTGGTTAAATATGGACCAGGTGTTCTTGTCAGTTCTGTCGATGCAATTCAGCCAAATATTTTCATGACAATCCTTCAGCGCTTTTGGATTCCCAATCTTAAATTCATCAAAGGGACTGTTGAAGTTAAGCTGACATCAGTTGCATCAACGAAGTTGATCTGTGAATCTGCACTGCTGTTGGATGGTGCAGCAGCCCAAACTTGGGGCAAATTGCTTGACAGTATTGTTGCATTGCTGTCCAGAACGGATCAAGATGGGGCACAACAAGATCAGAATGATGGTGCTGATGCAGATAGTCAGAGGACATCAGGTTATTCTGTCTCATTTGTACGTCTTCAATATGCTGGAAAGAGTGAAGATGATCTGTTGAAAGAGGTAAATGATCCAAAGCAGTTTCTGGTCACCTCCTTGGCTACTCTTTCTGCGCAATCTCCAGGGAGATTTGGTCCTATCATTGAGCAGAACGTGGATCCTGCAAACAAAGGCGCTCTTATTCAACTTTGTGCAGCTTACAATACCAACATTGTCTAGGAGCCAATGGCTTTGCTGTAAGGCATTTGCATTGTTTCCATGGGGTTTTGTCAAAGGATGTCTCAGGGGAGTCTATCGGTCGGTCGGTCTATCGGGTCAAGCTGGTCTTCGGTTTCATCCTTGCAATATTTCTGGCATGTGTAGGTTGGTCTTGGGAGAGGAAGGATGTCGAAATCATATAGTGGTGGAAAAACATGAACATTGTGGTGGAGGATGTCTCTTTGATTGGAATTTGGAATTTTCTTTTTTGGTGTGGAAGAGGTTTGTTTCCCCCGGAAAACATGAACATTGTGGAGGATACCCCGAGAATATTGCCAGCGTAGGCATGTGCCATCCTGGTGGAACTTTGCTGTAATTTTTTTGCCCTTGTTGGCTGAATGCCTTGCTCTGGCGTAGGAAATGGTATATGGCGTGGGAGTATATTGTCATCGGTCATCACCCTTTGTTAGGTCGGGTTACAAAAAATATTGCGAACCTCGATTGGAGCTCGCGATCCTGCTGCCATTTGCTCTGTTTTTTGAATGCATTGAGCC]
[+] EMBL OS0955A [ TCTGTCTCATTTGTACGTCTTCAATATGCTGGAAAGAGTGAAGATGATCTGTTGAAAGAGGTAAATGATCCAAAGCAGTTTCTGGTCACCTCCTTGGCTACTCTTTCTGCGCAATCTCCAGGGAGATTTGGTCCTATCATTGAGCAGAACGTGGATCCTGCAAACAAAGGCGCTCTTATTCAACTTTGTGCAGCTTACAATACCAACATTGTCTAGGAGCCAATGGCTTTGCTGTAAGGCATTTGCATTGTTTCCATGGGGTTTTGTCAAAGGATGTCTCAGGGGAGTCTATCGGTCGGTCGGTCTAT ]
consensusID : consensus_4513#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 449 fasta sequence
[CTATCATTGAGCAGAACGTGGATCCTGCAAACAAAGGCGCTCTTATTCAACTTTGTGCAGCTTACAATACCAACATTGTCTAGGAGCCAATGGCTTTGCTGTAAGGCATTTGCATTGTTTCCATGGGGTTTTGTCAAAGGATGTCTCAGGGGAGTCTATCGGTCGGTCGGTCTATCGGGTCAAGCTGGTCTTCGGTTTCATCCTTGCAATATTTCTGGCATGTGTAGGTTGGTCTTGGGAGAGGAAGGATGTCGAAATCATATAGTGGTGGAAAAACATGAACATTGTGGTGGAGGATGTCTCTTTGATTGGAATTTGGAATTTTCTTTTTTGGTGTGGAAGAGGTTTGTTTCCCCCGGAAAACATGAACATTGTGGAGGATACCCCGAGAATATTGCCAGCGTAGGCATGTGCCATCCTGGTGGAACTTTGCTGTAAAAAAAAAAAAA]
[+] EMBL C98176 [CTATCATTGAGCAGAACGTGGATCCTGCAAACAAAGGCGCTCTTATTCAACTTTGTGCAGCTTACAATACCAACATTGTCTAGGAGCCAATGGCTTTGCTGTAAGGCATTTGCATTGTTTCCATGGGGTTTTGTCAAAGGATGTCTCAGGGGAGTCTATCGGTCGGTCGGTCTATCGGGTCAAGCTGGTCTTCGGTTTCATCCTTGCAATATTTCTGGCATGTGTAGGTTGGTCTTGGGAGAGGAAGGATGTCGAAATCATATAGTGGTGGAAAAACATGAACATTGTGGTGGAGGATGTCTCTTTGATTGGAATTTGGAATTTTCTTTTTTGGTGTGGAAGAGGTTTGTTTCCCCCGGAAAACATGAACATTGTGGAGGATACCCCGAGAATATTGCCAGCGTAGGCATGTGCCATCCTGGTGGAACTTTGCTGTAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4513#0 GTCAATTTGAGCCGACCACCTCTCTCGCAGAACTACATGCAGCTGTTTGGTGTCCTGCTC 60
consensus_4513#1 ------------------------------------------------------------
consensus_4513#0 AGTAATGCTACCTGGGACCGTCCACCGTGTGTCCCTGCCTTGGTTCGGTTGCTGAGAGCA 120
consensus_4513#1 ------------------------------------------------------------
consensus_4513#0 TTCCTTCGGAAAATTCCAAATGAGCTTAACCAAGAGGGCAGGCTACCGAATATCTTAGTG 180
consensus_4513#1 ------------------------------------------------------------
consensus_4513#0 ATATTCCGCAGTCTCCTTTCGCGGAGCAGTACTGAAGATTCTGCCTTCTACATGCTTAAC 240
consensus_4513#1 ------------------------------------------------------------
consensus_4513#0 ACACTTGTGGAAAATGTGAGTTTTGACATCATGAATCCTCACATAAATGAGATATGGAGT 300
consensus_4513#1 ------------------------------------------------------------
consensus_4513#0 GCTTTGTTTACTCGACTACAGACAAGGCAGGCAGTGAAGTTTGTGAATTCTCTTGTGGTC 360
consensus_4513#1 ------------------------------------------------------------
consensus_4513#0 TTCATGTCCTTGGTGGTGGTTAAATATGGACCAGGTGTTCTTGTCAGTTCTGTCGATGCA 420
consensus_4513#1 ------------------------------------------------------------
consensus_4513#0 ATTCAGCCAAATATTTTCATGACAATCCTTCAGCGCTTTTGGATTCCCAATCTTAAATTC 480
consensus_4513#1 ------------------------------------------------------------
consensus_4513#0 ATCAAAGGGACTGTTGAAGTTAAGCTGACATCAGTTGCATCAACGAAGTTGATCTGTGAA 540
consensus_4513#1 ------------------------------------------------------------
consensus_4513#0 TCTGCACTGCTGTTGGATGGTGCAGCAGCCCAAACTTGGGGCAAATTGCTTGACAGTATT 600
consensus_4513#1 ------------------------------------------------------------
consensus_4513#0 GTTGCATTGCTGTCCAGAACGGATCAAGATGGGGCACAACAAGATCAGAATGATGGTGCT 660
consensus_4513#1 ------------------------------------------------------------
consensus_4513#0 GATGCAGATAGTCAGAGGACATCAGGTTATTCTGTCTCATTTGTACGTCTTCAATATGCT 720
consensus_4513#1 ------------------------------------------------------------
consensus_4513#0 GGAAAGAGTGAAGATGATCTGTTGAAAGAGGTAAATGATCCAAAGCAGTTTCTGGTCACC 780
consensus_4513#1 ------------------------------------------------------------
consensus_4513#0 TCCTTGGCTACTCTTTCTGCGCAATCTCCAGGGAGATTTGGTCCTATCATTGAGCAGAAC 840
consensus_4513#1 -------------------------------------------CTATCATTGAGCAGAAC 17
*****************
consensus_4513#0 GTGGATCCTGCAAACAAAGGCGCTCTTATTCAACTTTGTGCAGCTTACAATACCAACATT 900
consensus_4513#1 GTGGATCCTGCAAACAAAGGCGCTCTTATTCAACTTTGTGCAGCTTACAATACCAACATT 77
************************************************************
consensus_4513#0 GTCTAGGAGCCAATGGCTTTGCTGTAAGGCATTTGCATTGTTTCCATGGGGTTTTGTCAA 960
consensus_4513#1 GTCTAGGAGCCAATGGCTTTGCTGTAAGGCATTTGCATTGTTTCCATGGGGTTTTGTCAA 137
************************************************************
consensus_4513#0 AGGATGTCTCAGGGGAGTCTATCGGTCGGTCGGTCTATCGGGTCAAGCTGGTCTTCGGTT 1020
consensus_4513#1 AGGATGTCTCAGGGGAGTCTATCGGTCGGTCGGTCTATCGGGTCAAGCTGGTCTTCGGTT 197
************************************************************
consensus_4513#0 TCATCCTTGCAATATTTCTGGCATGTGTAGGTTGGTCTTGGGAGAGGAAGGATGTCGAAA 1080
consensus_4513#1 TCATCCTTGCAATATTTCTGGCATGTGTAGGTTGGTCTTGGGAGAGGAAGGATGTCGAAA 257
************************************************************
consensus_4513#0 TCATATAGTGGTGGAAAAACATGAACATTGTGGTGGAGGATGTCTCTTTGATTGGAATTT 1140
consensus_4513#1 TCATATAGTGGTGGAAAAACATGAACATTGTGGTGGAGGATGTCTCTTTGATTGGAATTT 317
************************************************************
consensus_4513#0 GGAATTTTCTTTTTTGGTGTGGAAGAGGTTTGTTTCCCCCGGAAAACATGAACATTGTGG 1200
consensus_4513#1 GGAATTTTCTTTTTTGGTGTGGAAGAGGTTTGTTTCCCCCGGAAAACATGAACATTGTGG 377
************************************************************
consensus_4513#0 AGGATACCCCGAGAATATTGCCAGCGTAGGCATGTGCCATCCTGGTGGAACTTTGCTGTA 1260
consensus_4513#1 AGGATACCCCGAGAATATTGCCAGCGTAGGCATGTGCCATCCTGGTGGAACTTTGCTGTA 437
************************************************************
consensus_4513#0 ATTTTTTTGCCCTTGTTGGCTGAATGCCTTGCTCTGGCGTAGGAAATGGTATATGGCGTG 1320
consensus_4513#1 AAAAAAAAAAAA------------------------------------------------ 449
*
consensus_4513#0 GGAGTATATTGTCATCGGTCATCACCCTTTGTTAGGTCGGGTTACAAAAAATATTGCGAA 1380
consensus_4513#1 ------------------------------------------------------------
consensus_4513#0 CCTCGATTGGAGCTCGCGATCCTGCTGCCATTTGCTCTGTTTTTTGAATGCATTGAGCC 1439
consensus_4513#1 -----------------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||