cluster # 4526

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4526 cluster # 4526 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4526#0 length = 907 sequences # 2

consensus_4526#1 length = 664 sequences # 1

consensusID : consensus_4526#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 907
fasta sequence

                              [GGCTCATCCAAAGCTATAGCTTAGCTCTGCACACCTGCAGCTCGTCGTCGGCGATGGGAGCGACCATGCAGCTCGTCGTCGGCCTCGCCGGCGTCGCCTCCTCATCCCCCCGCCTCGCGCCACACT-GCGCCGTGGCCACGGCCACCACCACCAGCAGCTGCAGCGTCAGGAAACAGAGCTGCAGCTGCTGCGGCGCCGCCCATCTGCCACGGCGGCTGCAGCACAAACAGCAGAGGAGGTGCGGGATTCGTGTCCGCGCCGTCGAGACGGACGCCGCCGCCGGCGGCGAGGCGAAGGCCGCACCGGAGGAGCCGCCGAGCGTCGACTTCGCGTTCGTCGCCCCGCGGCTGCTGCCGGACGGGACGCCGGACGTGCACTACCGGACGGCGTGCGGCGGGCAGAAGCTCCGCGACATCATGCTCGACAACTACATCGACCTCTACGGGCCTTACGATAAGCTTCTGCTCAACTGCGAGGGAGGTGGAGAGTGCGGGACCTGCATCGTCGAGGTAGTTGAAGGCGGTGAACTGCTTTCCCCCAAAACTGATGTTGAGAAGGAATTGCTGAAAAGGAAACCAAAGACATGGAGATTGGCGTGCCAGGCTACTGTCGGCAATCCAGATTCAACTGGACAGATGGTCATTCAGCAATTGCCGGAGTGGAAGATACATGAGTGGGACAAGTAGCTGAATTTTAACTAGCGCTGCTGTGTGGCGGCAATACAGTAGATTAATTTCACCGACCATGGAGAAAAAGAGAGAGAGCCTAGCACATGATCAGGAGAAGAAACATTGGAAGACGATTAATGCTGTACATCCAAACTCCATGTAAAATTGTATACGTCTCCTGTAGCTACCAAATGGTCAGCATGAGTGTAATCAGGGATTGAAATTCGCTAATCTCAGAC]

[+] EMBL AK068191             [GGCTCATCCAAAGCTATAGCTTAGCTCTGCACACCTGCAGCTCGTCGTCGGCGATGGGAGCGACCATGCAGCTCGTCGTCGGCCTCGCCGGCGTCGCCTCCTCATCCCCCCGCCTCGCGCCACACT GCGCCGTGGCCACGGCCACCACCACCAGCAGCTGCAGCGTCAGGAAACAGAGCTGCAGCTGCTGCGGCGCCGCCCATCTGCCACGGCGGCTGCAGCACAAACAGCAGAGGAGGTGCGGGATTCGTGTCCGCGCCGTCGAGACGGACGCCGCCGCCGGCGGCGAGGCGAAGGCCGCACCGGAGGAGCCGCCGAGCGTCGACTTCGCGTTCGTCGCCCCGCGGCTGCTGCCGGACGGGACGCCGGACGTGCACTACCGGACGGCGTGCGGCGGGCAGAAGCTCCGCGACATCATGCTCGACAACTACATCGACCTCTACGGGCCTTACGATAAGCTTCTGCTCAACTGCGAGGGAGGTGGAGAGTGCGGGACCTGCATCGTCGAGGTAGTTGAAGGCGGTGAACTGCTTTCCCCCAAAACTGATGTTGAGAAGGAATTGCTGAAAAGGAAACCAAAGACATGGAGATTGGCGTGCCAGGCTACTGTCGGCAATCCAGATTCAACTGGACAGATGGTCATTCAGCAATTGCCGGAGTGGAAGATACATGAGTGGGACAAGTAGCTGAATTTTAACTAGCGCTGCTGTGTGGCGGCAATACAGTAGATTAATTTCACCGACCATGGAGAAAAAGAGAGAGAGCCTAGCACATGATCAGGAGAAGAAACATTGGAAGACGATTAATGCTGTACATCCAAACTCCATGTAAAATTGTATACGTCTCCTGTAGCTACCAAATGGTCAGCATGAGTGTAATCAGGGATTGAAATTCGCTAATCTCAGAC]
[+] EMBL CF325354             [   TCATCCAAAGCTATAGCTTAGCTCTGCACACCTGCAGCTCGTCGTCGGCGATGGGAGCGACCATGCAGCTCGTCGTCGGCCTCGCCGGCGTCGCCTCCTCCTCCCCCCGCCTCGCGCCACACTGGCGCCGTGGCCACGGCCACCACCACCAGCAGCTGCAGCGTCAGGAAACAGAGCTGCAGCTGCTGCGGCGCCGCCCATCTGCCACGGCGGCTGCAGCACAAACAGCAGAGGAGGTGCGGGATTCGTGTCCGCGCCGTCGAGACGGACGCCGCCGCCGGCGGCGAGGCGAAGGCCGCACCGGAGGAGCCGCCGAGCGTCGACTTCGCGTTCGTCGCCCCGCGGCTGCTGCCGGACGGGACGCCGGACGTGCACTACCGGACGGCGTGCGGCGGGCAGAAGCTCCGCGACATCATGCTCGACAACTACATCGACCTCTACGGGCCTTACGATAAGCTTCTGCTCAACTGCGAGGGAGGTGGAAAGTGCGGGACCTGCATCGTCGAGGT                                                                                                                                                                                                                                                                                                                                                                                                            ]




>consensus_4526#0
GGCTCATCCAAAGCTATAGCTTAGCTCTGCACACCTGCAGCTCGTCGTCGGCGATGGGAG
CGACCATGCAGCTCGTCGTCGGCCTCGCCGGCGTCGCCTCCTCATCCCCCCGCCTCGCGC
CACACTGCGCCGTGGCCACGGCCACCACCACCAGCAGCTGCAGCGTCAGGAAACAGAGCT
GCAGCTGCTGCGGCGCCGCCCATCTGCCACGGCGGCTGCAGCACAAACAGCAGAGGAGGT
GCGGGATTCGTGTCCGCGCCGTCGAGACGGACGCCGCCGCCGGCGGCGAGGCGAAGGCCG
CACCGGAGGAGCCGCCGAGCGTCGACTTCGCGTTCGTCGCCCCGCGGCTGCTGCCGGACG
GGACGCCGGACGTGCACTACCGGACGGCGTGCGGCGGGCAGAAGCTCCGCGACATCATGC
TCGACAACTACATCGACCTCTACGGGCCTTACGATAAGCTTCTGCTCAACTGCGAGGGAG
GTGGAGAGTGCGGGACCTGCATCGTCGAGGTAGTTGAAGGCGGTGAACTGCTTTCCCCCA
AAACTGATGTTGAGAAGGAATTGCTGAAAAGGAAACCAAAGACATGGAGATTGGCGTGCC
AGGCTACTGTCGGCAATCCAGATTCAACTGGACAGATGGTCATTCAGCAATTGCCGGAGT
GGAAGATACATGAGTGGGACAAGTAGCTGAATTTTAACTAGCGCTGCTGTGTGGCGGCAA
TACAGTAGATTAATTTCACCGACCATGGAGAAAAAGAGAGAGAGCCTAGCACATGATCAG
GAGAAGAAACATTGGAAGACGATTAATGCTGTACATCCAAACTCCATGTAAAATTGTATA
CGTCTCCTGTAGCTACCAAATGGTCAGCATGAGTGTAATCAGGGATTGAAATTCGCTAAT
CTCAGAC

consensusID : consensus_4526#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 664
fasta sequence

                              [TCCGCGCCGTCGAGACGGACGCCGCCGCCGGCGGCGAGGCGAAGGCCGCACCGGAGGAGCCGCCGAGCGTCGACTTCGCGTTCGTCGCCCCGCGGCTGCTGCCGGACGGGACGCCGGACGTGCACTACCGGACGGCGTGCGGCGGGCAGAAGCTCCGCGACATCATGCTCGACAACTACATCGACCTCTACGGGCCTTACGATAAGCTTCTGCTCAACTGCGAGGGAGGTGGAGAGTGCGGGACCTGCATCGTCGAGGTAGTTGAAGGCGGTGAACTGCTTTCCCCCAAAACTGATGTTGAGAAGGAATTGCTGAAAAGGAAACCAAAGACATGGAGATTGGCGTGCCAGGCTACTGTCGGCAATCCAGATTCAACTGGACAGATGGTCATTCAGCAATTGCCGGAGTGGAAGATACATGAGTGGGACAAGTAGCTGAATTTTAACTAGCGCTGCTGTGTGGCGGCAATACAGTAGATTAATTTCACCGACCATGGAGAAAAAGAGAGAGAGCCTAGCACATGATCAGGAGAAGAAACATTGGAAGACGATTAATGCTGTACATCCAAACTCCATGTAAAATTGTATACGTCTCCTGTAGCTACCAAATGGTCAGCATGAGTGTAATCAGGGATTGAAAAAAAAAAAAAAAAAAACTCGAGACT]

[-] EMBL BF430535             [TCCGCGCCGTCGAGACGGACGCCGCCGCCGGCGGCGAGGCGAAGGCCGCACCGGAGGAGCCGCCGAGCGTCGACTTCGCGTTCGTCGCCCCGCGGCTGCTGCCGGACGGGACGCCGGACGTGCACTACCGGACGGCGTGCGGCGGGCAGAAGCTCCGCGACATCATGCTCGACAACTACATCGACCTCTACGGGCCTTACGATAAGCTTCTGCTCAACTGCGAGGGAGGTGGAGAGTGCGGGACCTGCATCGTCGAGGTAGTTGAAGGCGGTGAACTGCTTTCCCCCAAAACTGATGTTGAGAAGGAATTGCTGAAAAGGAAACCAAAGACATGGAGATTGGCGTGCCAGGCTACTGTCGGCAATCCAGATTCAACTGGACAGATGGTCATTCAGCAATTGCCGGAGTGGAAGATACATGAGTGGGACAAGTAGCTGAATTTTAACTAGCGCTGCTGTGTGGCGGCAATACAGTAGATTAATTTCACCGACCATGGAGAAAAAGAGAGAGAGCCTAGCACATGATCAGGAGAAGAAACATTGGAAGACGATTAATGCTGTACATCCAAACTCCATGTAAAATTGTATACGTCTCCTGTAGCTACCAAATGGTCAGCATGAGTGTAATCAGGGATTGAAAAAAAAAAAAAAAAAAACTCGAGACT]




>consensus_4526#1
TCCGCGCCGTCGAGACGGACGCCGCCGCCGGCGGCGAGGCGAAGGCCGCACCGGAGGAGC
CGCCGAGCGTCGACTTCGCGTTCGTCGCCCCGCGGCTGCTGCCGGACGGGACGCCGGACG
TGCACTACCGGACGGCGTGCGGCGGGCAGAAGCTCCGCGACATCATGCTCGACAACTACA
TCGACCTCTACGGGCCTTACGATAAGCTTCTGCTCAACTGCGAGGGAGGTGGAGAGTGCG
GGACCTGCATCGTCGAGGTAGTTGAAGGCGGTGAACTGCTTTCCCCCAAAACTGATGTTG
AGAAGGAATTGCTGAAAAGGAAACCAAAGACATGGAGATTGGCGTGCCAGGCTACTGTCG
GCAATCCAGATTCAACTGGACAGATGGTCATTCAGCAATTGCCGGAGTGGAAGATACATG
AGTGGGACAAGTAGCTGAATTTTAACTAGCGCTGCTGTGTGGCGGCAATACAGTAGATTA
ATTTCACCGACCATGGAGAAAAAGAGAGAGAGCCTAGCACATGATCAGGAGAAGAAACAT
TGGAAGACGATTAATGCTGTACATCCAAACTCCATGTAAAATTGTATACGTCTCCTGTAG
CTACCAAATGGTCAGCATGAGTGTAATCAGGGATTGAAAAAAAAAAAAAAAAAAACTCGA
GACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4526#0      GGCTCATCCAAAGCTATAGCTTAGCTCTGCACACCTGCAGCTCGTCGTCGGCGATGGGAG 60
consensus_4526#1      ------------------------------------------------------------
                                                                                  

consensus_4526#0      CGACCATGCAGCTCGTCGTCGGCCTCGCCGGCGTCGCCTCCTCATCCCCCCGCCTCGCGC 120
consensus_4526#1      ------------------------------------------------------------
                                                                                  

consensus_4526#0      CACACTGCGCCGTGGCCACGGCCACCACCACCAGCAGCTGCAGCGTCAGGAAACAGAGCT 180
consensus_4526#1      ------------------------------------------------------------
                                                                                  

consensus_4526#0      GCAGCTGCTGCGGCGCCGCCCATCTGCCACGGCGGCTGCAGCACAAACAGCAGAGGAGGT 240
consensus_4526#1      ------------------------------------------------------------
                                                                                  

consensus_4526#0      GCGGGATTCGTGTCCGCGCCGTCGAGACGGACGCCGCCGCCGGCGGCGAGGCGAAGGCCG 300
consensus_4526#1      ------------TCCGCGCCGTCGAGACGGACGCCGCCGCCGGCGGCGAGGCGAAGGCCG 48
                                  ************************************************

consensus_4526#0      CACCGGAGGAGCCGCCGAGCGTCGACTTCGCGTTCGTCGCCCCGCGGCTGCTGCCGGACG 360
consensus_4526#1      CACCGGAGGAGCCGCCGAGCGTCGACTTCGCGTTCGTCGCCCCGCGGCTGCTGCCGGACG 108
                      ************************************************************

consensus_4526#0      GGACGCCGGACGTGCACTACCGGACGGCGTGCGGCGGGCAGAAGCTCCGCGACATCATGC 420
consensus_4526#1      GGACGCCGGACGTGCACTACCGGACGGCGTGCGGCGGGCAGAAGCTCCGCGACATCATGC 168
                      ************************************************************

consensus_4526#0      TCGACAACTACATCGACCTCTACGGGCCTTACGATAAGCTTCTGCTCAACTGCGAGGGAG 480
consensus_4526#1      TCGACAACTACATCGACCTCTACGGGCCTTACGATAAGCTTCTGCTCAACTGCGAGGGAG 228
                      ************************************************************

consensus_4526#0      GTGGAGAGTGCGGGACCTGCATCGTCGAGGTAGTTGAAGGCGGTGAACTGCTTTCCCCCA 540
consensus_4526#1      GTGGAGAGTGCGGGACCTGCATCGTCGAGGTAGTTGAAGGCGGTGAACTGCTTTCCCCCA 288
                      ************************************************************

consensus_4526#0      AAACTGATGTTGAGAAGGAATTGCTGAAAAGGAAACCAAAGACATGGAGATTGGCGTGCC 600
consensus_4526#1      AAACTGATGTTGAGAAGGAATTGCTGAAAAGGAAACCAAAGACATGGAGATTGGCGTGCC 348
                      ************************************************************

consensus_4526#0      AGGCTACTGTCGGCAATCCAGATTCAACTGGACAGATGGTCATTCAGCAATTGCCGGAGT 660
consensus_4526#1      AGGCTACTGTCGGCAATCCAGATTCAACTGGACAGATGGTCATTCAGCAATTGCCGGAGT 408
                      ************************************************************

consensus_4526#0      GGAAGATACATGAGTGGGACAAGTAGCTGAATTTTAACTAGCGCTGCTGTGTGGCGGCAA 720
consensus_4526#1      GGAAGATACATGAGTGGGACAAGTAGCTGAATTTTAACTAGCGCTGCTGTGTGGCGGCAA 468
                      ************************************************************

consensus_4526#0      TACAGTAGATTAATTTCACCGACCATGGAGAAAAAGAGAGAGAGCCTAGCACATGATCAG 780
consensus_4526#1      TACAGTAGATTAATTTCACCGACCATGGAGAAAAAGAGAGAGAGCCTAGCACATGATCAG 528
                      ************************************************************

consensus_4526#0      GAGAAGAAACATTGGAAGACGATTAATGCTGTACATCCAAACTCCATGTAAAATTGTATA 840
consensus_4526#1      GAGAAGAAACATTGGAAGACGATTAATGCTGTACATCCAAACTCCATGTAAAATTGTATA 588
                      ************************************************************

consensus_4526#0      CGTCTCCTGTAGCTACCAAATGGTCAGCATGAGTGTAATCAGGGATTGAAATTCGCTAAT 900
consensus_4526#1      CGTCTCCTGTAGCTACCAAATGGTCAGCATGAGTGTAATCAGGGATTGAAAAAAAAAAAA 648
                      ***************************************************      ** 

consensus_4526#0      CTCAGAC--------- 907
consensus_4526#1      AAAAAAACTCGAGACT 664
                         * *