cluster # 4527

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Oryza sativa
cluster # 4527 cluster # 4527 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4527#0 length = 484 sequences # 2

consensus_4527#1 length = 422 sequences # 1

consensusID : consensus_4527#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 484
fasta sequence

                              [CAGCCAACTGCATCGATATCGATCGATCACTCGACCGACCATCTCACAAGCAAAGCAAAAGCTCGTGGCAACAATGGCGAAGTGGGCGGCGATCATGGCGGTGCTGCTGCTGGCGGCGGCGTGGGCGCCGGCGCCGGCGACGGCGCAGTGCAACGCCGGGCAGCTGGCGATCTGCGCGGGCGCGATCATCGGCGGGTCGACGCCGTCGGCGTCGTGCTGCTCCAACCTGCGCGCGCAGAGGGGGTGCTTCTGCCAGTACGCGCGCAACCCGGCGTACGCCTCCTACATCAACAGCGCCAACGCCCGCAAGACCCTCACCTCCTGCGGCATCGCCATCCCCCGCTGCTAGGCACGCTCGATCTCCCGCCGCCGCGCGCCGCCGCTCGCCGGCGCCGGCGCCGGCCATGGTGCGTGGCAAATATATATATATATATATATATATACTGTGTGTACGTGCGCTTGAATAAAGGACGTGAGTTAATTT]

[+] EMBL AK063196             [CAGCCAACTGCATCGATATCGATCGATCACTCGACCGACCATCTCACAAGCAAAGCAAAAGCTCGTGGCAACAATGGCGAAGTGGGCGGCGATCATGGCGGTGCTGCTGCTGGCGGCGGCGTGGGCGCCGGCGCCGGCGACGGCGCAGTGCAACGCCGGGCAGCTGGCGATCTGCGCGGGCGCGATCATCGGCGGGTCGACGCCGTCGGCGTCGTGCTGCTCCAACCTGCGCGCGCAGAGGGGGTGCTTCTGCCAGTACGCGCGCAACCCGGCGTACGCCTCCTACATCAACAGCGCCAACGCCCGCAAGACCCTCACCTCCTGCGGCATCGCCATCCCCCGCTGCTAGGCACGCTCGATCTCCCGCCGCCGCGCGCCGCCGCTCGCCGGCGCCGGCGCCGGCCATGGTGCGTGGCAAATATATATATATATATATATATATACTGTGTGTACGTGCGCTTGAATAAAGGACGTGAGTTAATTT]
[+] EMBL OS1321804            [                             CTCGACCGACCATCTCACAAGCAAAGCAAAAGCTCGTGGCAACAATGGCGAAGTGGGCGGCGATCATGGCGGTGCTGCTGCTGGCGGCGGCGTGGGCG CGGCGTCGGCGACGNATGA TGCAACGTCGGGCAGCTGGCGATCTGCGCGGGCGCGATCATCGGCGGGTCGACGTCGTCGGGNTNG NCTGCTCCAACCTGCGCGCGCAGAGTGGGTGCTTCT                                                                                                                                                                                                                                         ]




>consensus_4527#0
CAGCCAACTGCATCGATATCGATCGATCACTCGACCGACCATCTCACAAGCAAAGCAAAA
GCTCGTGGCAACAATGGCGAAGTGGGCGGCGATCATGGCGGTGCTGCTGCTGGCGGCGGC
GTGGGCGCCGGCGCCGGCGACGGCGCAGTGCAACGCCGGGCAGCTGGCGATCTGCGCGGG
CGCGATCATCGGCGGGTCGACGCCGTCGGCGTCGTGCTGCTCCAACCTGCGCGCGCAGAG
GGGGTGCTTCTGCCAGTACGCGCGCAACCCGGCGTACGCCTCCTACATCAACAGCGCCAA
CGCCCGCAAGACCCTCACCTCCTGCGGCATCGCCATCCCCCGCTGCTAGGCACGCTCGAT
CTCCCGCCGCCGCGCGCCGCCGCTCGCCGGCGCCGGCGCCGGCCATGGTGCGTGGCAAAT
ATATATATATATATATATATATACTGTGTGTACGTGCGCTTGAATAAAGGACGTGAGTTA
ATTT

consensusID : consensus_4527#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 422
fasta sequence

                              [TCGACCGACCATCTCCAAGCAAAGCAATGGCGAAGTGGGCGGCGATCACGGCGGCGTTGCTGCTGCTGGCGGCGGCGGCGTGGGCAGCACGGCAGCCGGCGACGGCGCAGTGCAACGCCGGGCACTGGCGATCTGCGCGGGCGCGATCATCAGCGGTCGGCCCGTCGGCGTCGTGCTGCTCCAACCTGCGCGCGCAGAGGGGGTGCTTCTGCCAGTACGCGCGCAACCCGGCGTACGCCTCCTACATCAACAGCCCCAACGCCCGCAAGACCCTCACCTCCTGCGGCATCGCCATCCCCCGCTGCTAGGCTCGCTCGATCTCCCGCCGCCGCGCGCCCCGCTCGCCGGCGCCGGCGCCGGCCATGGTGTGTGTACGTCGCGTGCGCTTTGAATAAAAAGGACGTGAGCTTTGAATTAAAAAA]

[+] EMBL BI806617             [TCGACCGACCATCTCCAAGCAAAGCAATGGCGAAGTGGGCGGCGATCACGGCGGCGTTGCTGCTGCTGGCGGCGGCGGCGTGGGCAGCACGGCAGCCGGCGACGGCGCAGTGCAACGCCGGGCACTGGCGATCTGCGCGGGCGCGATCATCAGCGGTCGGCCCGTCGGCGTCGTGCTGCTCCAACCTGCGCGCGCAGAGGGGGTGCTTCTGCCAGTACGCGCGCAACCCGGCGTACGCCTCCTACATCAACAGCCCCAACGCCCGCAAGACCCTCACCTCCTGCGGCATCGCCATCCCCCGCTGCTAGGCTCGCTCGATCTCCCGCCGCCGCGCGCCCCGCTCGCCGGCGCCGGCGCCGGCCATGGTGTGTGTACGTCGCGTGCGCTTTGAATAAAAAGGACGTGAGCTTTGAATTAAAAAA]




>consensus_4527#1
TCGACCGACCATCTCCAAGCAAAGCAATGGCGAAGTGGGCGGCGATCACGGCGGCGTTGC
TGCTGCTGGCGGCGGCGGCGTGGGCAGCACGGCAGCCGGCGACGGCGCAGTGCAACGCCG
GGCACTGGCGATCTGCGCGGGCGCGATCATCAGCGGTCGGCCCGTCGGCGTCGTGCTGCT
CCAACCTGCGCGCGCAGAGGGGGTGCTTCTGCCAGTACGCGCGCAACCCGGCGTACGCCT
CCTACATCAACAGCCCCAACGCCCGCAAGACCCTCACCTCCTGCGGCATCGCCATCCCCC
GCTGCTAGGCTCGCTCGATCTCCCGCCGCCGCGCGCCCCGCTCGCCGGCGCCGGCGCCGG
CCATGGTGTGTGTACGTCGCGTGCGCTTTGAATAAAAAGGACGTGAGCTTTGAATTAAAA
AA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4527#0      CAGCCAACTGCATCGATATCGATCGATCACTCGACCGACCATCTCACAAGCAAAGCAAAA 60
consensus_4527#1      ------------------------------TCGACCGACCATCTC-CAAGCAAAGCAA-- 27
                                                    *************** ************  

consensus_4527#0      GCTCGTGGCAACAATGGCGAAGTGGGCGGCGATCATGGCGGTGCTGCTGCTG------GC 114
consensus_4527#1      --------------TGGCGAAGTGGGCGGCGATCACGGCGGCGTTGCTGCTGCTGGCGGC 73
                                    ********************* ***** * ********      **

consensus_4527#0      GGCGGCGTGGGCGCC--GGC-GCCGGCGACGGCGCAGTGCAACGCCGGGCAGCTGGCGAT 171
consensus_4527#1      GGCGGCGTGGGCAGCACGGCAGCCGGCGACGGCGCAGTGCAACGCCGGGCA-CTGGCGAT 132
                      ************  *  *** ****************************** ********

consensus_4527#0      CTGCGCGGGCGCGATCATCGGCGGGTCGACGCCGTCGGCGTCGTGCTGCTCCAACCTGCG 231
consensus_4527#1      CTGCGCGGGCGCGATCATCAGCGG-TCGGC-CCGTCGGCGTCGTGCTGCTCCAACCTGCG 190
                      ******************* **** *** * *****************************

consensus_4527#0      CGCGCAGAGGGGGTGCTTCTGCCAGTACGCGCGCAACCCGGCGTACGCCTCCTACATCAA 291
consensus_4527#1      CGCGCAGAGGGGGTGCTTCTGCCAGTACGCGCGCAACCCGGCGTACGCCTCCTACATCAA 250
                      ************************************************************

consensus_4527#0      CAGCGCCAACGCCCGCAAGACCCTCACCTCCTGCGGCATCGCCATCCCCCGCTGCTAGGC 351
consensus_4527#1      CAGCCCCAACGCCCGCAAGACCCTCACCTCCTGCGGCATCGCCATCCCCCGCTGCTAGGC 310
                      **** *******************************************************

consensus_4527#0      ACGCTCGATCTCCCGCCGCCGCGCGCCGCCGCTCGCCGGCGCCGGCGCCGGCCATGGTGC 411
consensus_4527#1      TCGCTCGATCTCCCGCCGCCGCGCGCC-CCGCTCGCCGGCGCCGGCGCCGGCCATGGTGT 369
                       ************************** ******************************* 

consensus_4527#0      GTGGCAAATATATATATATATATATATATATACTGTGTGTACGTGCGCTTGAATAAAGGA 471
consensus_4527#1      GTGTACGTCGCGTGCGCTT---TGAATAAAAAGGACGTGAGCTTTGAATTAAAAAA---- 422
                      ***         *     *   *  *** * *    ***  * *    ** ** **    

consensus_4527#0      CGTGAGTTAATTT 484
consensus_4527#1      -------------