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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4528#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1139 fasta sequence
[CAGGTGGCAGCTTGATTATTTAACTAAGCTGAAGTGGCCTCAAATTGAACACGAGAATGCACCATGGGCATCACGTACCCCATTGTGTAGTCTGCATAGCTGGTCATTTACTGGGATATTTCCTGAGCCAGCACCTCGTTCTCCTTTGATGGTTGTTGGGGCTGCAGGAAGTGTTGACAGTGATATGGAGCGAAGATCTGTGACGCATTGGGAAGAAACTGAGAGTACCAGGGAGGATGGGGAGCTTCTGGCCGTGGTTCCTGCTGAAAACACGCCAAGTGTTTCTAAAATATCACACTCTGAAGTGTCACCGGNGTTCCGAAACCATTCTAGAGGCTTATCCCTGATATCAAAGAGCGCCACACCATCTAAACTAAGCATCTCACACAGTTTTTGGTGGAAATGAGG-CGNTCTTGATCCTCTTGATGTATAGTGACAGTGAGTTAGAGGAACAGACATTTGTTGACCAAGAAGTGGAAAAAGTCAACCTTGCTACAGACAAATCCTGGGAGGACTATGCTTCCAGGGAGTTTACCCTGGTCTTGAGTAAAACTCTGAAGAATGGTCCAAAAGTAATGCTGGAAGCCAAGATTGCGATCAGCATGGAATATCCTGTTAGGCCACCTTTTTTCACATTGCAATTGCTTTCGGGAAAGACTGAAGCTTTAAAATGGCACAATGATCTTAGAGCAATGGAAGCTGAGGTGAATCTTCACATCCTTCAGGTTGTACCTTCGTCATATGAGGACTACATACTTACTCACCAAATTCTGTGCCTGGCTATGTTATTTGATATGCATTTTGATGAGGATCATGGTAAAAGAAAGGTTACTTCAGTGATTGATGTGGGTCTATGTAAACCAGTTAGTGGAACCATGCTTACCAGATCAGTCAGGGGAAGAGACCGCAGACAGACTATTTATTGGCGCAGCGCTGATTGGTCTTCTAGNTGGTTATAGAGTATGCATAATGCTGGCCCTACTGAATCAAGCATCTCGTCTCATTTTGAGGAAATTGGATGCTGTCAGTGACAGTCTTTCATTTCNTTCCCGNCNGGGAAAAAGGTGNCTACATGGATTCATGGGTATTCCTACTGGCTTGACATANATTATGAGCTTTTTTCNTTTTNTTTGGTTGCT]
[+] EMBL C97481 [CAGGTGGCAGCTTGATTATTTAACTAAGCTGAAGTGGCCTCAAATTGAACACGAGAATGCACCATGGGCATCACGTACCCCATTGTGTAGTCTGCATAGCTGGTCATTTACTGGGATATTTCCTGAGCCAGCACCTCGTTCTCCTTTGATGGTTGTTGGGGCTGCAGGAAGTGTTGACAGTGATATGGAGCGAAGATCTGTGACGCATTGGGAAGAAACTGAGAGTACCAGGGAGGATGGGGAGCTTCTGGCCGTGGTTCCTGCTGAAAACACGCCAAGTGTTTCTAAAATATCACACTCTGAAGTGTCACCGGNGTTCCGAAACCATTCTAGAGGCTTATCCCTGATATCAAAGAGCGCCACACCATCTAAACTAAGCATCTCACACAGTTTTTGGTGGAAATGAGG CGNTCTTGATCCTCTTGA ]
[+] EMBL CA767328 [ TGAAAACACGCCAAGTGTTTCTAAAATATCACACTCTGAAGTGTCACCGGAGGTTCGAAACCATTCTAGAGGCTTATCCCTGATATCAAAGAGCGCCACACCATCTAAACTAAGCATCTCACACAG TTTTGGTAGAAATGAGGACGATCTTGAT CTCTTGATGTATAGTGACAGTGAGTTAGAGGAACAGACATTTGTTGACCAAGAAGTGGAAAAAGTCAACCTTGCTACAGACAAATCCTGGGAGGACTATGCTTCCAGGGAGTTTACCCTGGTCTTGAGTAAAACTCTGAAGAATGGTCCAAAAGTAATGCTGGAAGCCAAGATTGCGATCAGCATGGAATATCCTGTTAGGCCACCTTTTTTCACATTGCAATTGCTTTCGGGAAAGACTGAAGCTTTAAAATGGCACAATGATCTTAGAGCAATGGAAGCTGAGGTGAATCTTCACATCCTTCAGGTTGTACCTTCGTCATATGAGGACTACATACTTACTCACCAAATTCTGTGCCTGGCTATGTTATTTGATATGCATTTTGATGAGGATCATGGTAAAAGAAAGGTTACTTCAGTGATTGATGTGGGTCTATGTAAACCAGTTAGTGGAACCATGCTTACCAGATCAGTCAGGGGAAGAGACCGCAGACAGACTATTTATTGGCGCAGCGCTGATTGGTCTTCTAGNTGGTTATAGAGTATGCATAATGCTGGCCCTACTGAATCAAGCATCTCGTCTCATTTTGAGGAAATTGGATGCTGTCAGTGACAGTCTTTCATTTCNTTCCCGNCNGGGAAAAAGGTGNCTACATGGATTCATGGGTATTCCTACTGGCTTGACATANATTATGAGCTTTTTTCNTTTTNTTTGGTTGCT]
consensusID : consensus_4528#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 745 fasta sequence
[TGGGGNATCTTGGTAAAAGAAAGGTTACTTCCAGTGATTGATGTGGGCCTATGTAACCCAGTTAGTGGAACCATGCTTACCAGATCAGTCCAGGGNAAGAGNCCGCAGACAGACTATTTATTGGCGCAGCGCTGATTGTTCTTCTAGTTGTTTATAGAGTATGCATAATGCTGGCCCTACTGAATCAAGCATCTCGTCTCATTTTGAGGAAATTGGATGCTGACAGTGACAGTCTTTCATTCCTTCCCGCCACGGAGAAAGTTGCCTAACATGGATTCATGGTTATTCCTACTGGCTTGACATAGATGATGAGCTTTTTCCTTTTCTTTTGTTTGCTGGAGAGAATNTTCGCTGTTGTGATACTGATGAGATTATCTAACTACCCTGACTGTAGCCAATGGAGTGTTGTCGGGCTTGTGTATGAGGATTTTTTTTTTTTTGGGTGGGGGTGGGTAAGAGCCAATGCAAGATATCCACTTTTTTCACGGTCATCATCAGAAGATATGTAACCGTACAACATTCTAAAACTCTTGTTGCATCCTGTATTCTTCCAGCACGTTTTGGGAAGCCTTCAGCATTAAGCAAAAGAACAGCTTGCACCAAGTATAGCTTGCGTGCCAAGGGTGATCAGACTTGTATGTGACTTGAGTCATCTGATGTTTCATCACTTGGGTGACATCTGTGAGGTAATGCATTGCTCGTCCTGAGTCCTGACCCAAAAAAAAAAAAAAAAAAACAAAAAAAA]
[+] EMBL C97480 [TGGGGNATCTTGGTAAAAGAAAGGTTACTTCCAGTGATTGATGTGGGCCTATGTAACCCAGTTAGTGGAACCATGCTTACCAGATCAGTCCAGGGNAAGAGNCCGCAGACAGACTATTTATTGGCGCAGCGCTGATTGTTCTTCTAGTTGTTTATAGAGTATGCATAATGCTGGCCCTACTGAATCAAGCATCTCGTCTCATTTTGAGGAAATTGGATGCTGACAGTGACAGTCTTTCATTCCTTCCCGCCACGGAGAAAGTTGCCTAACATGGATTCATGGTTATTCCTACTGGCTTGACATAGATGATGAGCTTTTTCCTTTTCTTTTGTTTGCTGGAGAGAATNTTCGCTGTTGTGATACTGATGAGATTATCTAACTACCCTGACTGTAGCCAATGGAGTGTTGTCGGGCTTGTGTATGAGGATTTTTTTTTTTTTGGGTGGGGGTGGGTAAGAGCCAATGCAAGATATCCACTTTTTTCACGGTCATCATCAGAAGATATGTAACCGTACAACATTCTAAAACTCTTGTTGCATCCTGTATTCTTCCAGCACGTTTTGGGAAGCCTTCAGCATTAAGCAAAAGAACAGCTTGCACCAAGTATAGCTTGCGTGCCAAGGGTGATCAGACTTGTATGTGACTTGAGTCATCTGATGTTTCATCACTTGGGTGACATCTGTGAGGTAATGCATTGCTCGTCCTGAGTCCTGACCCAAAAAAAAAAAAAAAAAAACAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4528#0 CAGGTGGCAGCTTGATTATTTAACTAAGCTGAAGTGGCCTCAAATTGAACACGAGAATGC 60
consensus_4528#1 ------------------------------------------------------------
consensus_4528#0 ACCATGGGCATCACGTACCCCATTGTGTAGTCTGCATAGCTGGTCATTTACTGGGATATT 120
consensus_4528#1 ------------------------------------------------------------
consensus_4528#0 TCCTGAGCCAGCACCTCGTTCTCCTTTGATGGTTGTTGGGGCTGCAGGAAGTGTTGACAG 180
consensus_4528#1 --------------------------TGGGGNATCTTGGTAAAAGAAAGGTTACTTCCAG 34
** * * **** * * * ***
consensus_4528#0 TGATATGGAGCGAAGATCTGTGACGCATTGGGAAGAA----ACTGAGAGTACCAGGGAGG 236
consensus_4528#1 TGAT-TGATGTGGGCCTATGTAACCCAGTTAGTGGAACCATGCTTACCAGATCAGTCCAG 93
**** ** * * * *** ** ** * * *** ** * * *** *
consensus_4528#0 ATGGGGAGCTTCTGGCCGTGGTTCCTGCTGAAAACACGCCAAGTGTTTCTAAAATATCAC 296
consensus_4528#1 GGNAAGAGNCCGCAGACAGACTATTTATTGGCGCAGCGCTGATTGTTCTTCTAGTTGTTT 153
*** * * * * ** *** * **** * * *
consensus_4528#0 ACTCTGAA---GTGTCACCGGNGTTCCGAAACCATTCTAGAGGCTTATCCCTGATATCAA 353
consensus_4528#1 ATAGAGTATGCATAATGCTGGCCCTACTGAATCAAGCATCTCGTCTCATTTTGAGGAAAT 213
* * * * * ** * * ** ** * * * *** *
consensus_4528#0 AGAGCGCCACACCATCTAAACTAAGCATCTCACACAGTTTTTGGTGGAAATGAGGCGNTC 413
consensus_4528#1 TGGATGCTG-ACAGTGACAGTCTTTCATTCCTTCCCGCCAC-GGAGAAAGTTGCCTAACA 271
* ** ** * * *** * * * ** * ** *
consensus_4528#0 TTGATCC-TCTTGATGTATAGTGACAGTGAGTTAGAGGAACAGACATTTGTTGACCAAGA 472
consensus_4528#1 TGGATTCATGGTTATTCCTACTGGCT-TGACATAGATGATGAGCTTTTTCCTTTTCTTTT 330
* *** * * * ** ** ** * *** **** ** ** *** * *
consensus_4528#0 AGTGGAAAAAGTCAACCTT-GCTACAGACAAATCCTGGGAGGACTATGCTTCCAGGGAGT 531
consensus_4528#1 GTTTGCTGGAGAGAATNTTCGCTGTTGT--GATACTGATGAGATTATCTAACTA---CCC 385
* * ** ** ** *** * ** *** ** *** * *
consensus_4528#0 TTACCCTGGTCTTGAGTAAAACTCTGAAGAA-TGGTCCAAAAGTAATGCTGGAAGCCAAG 590
consensus_4528#1 TGACTGTAGCC---AATGGAGTGTTGTCGGGCTTGTGTATGAGGATTTTTTTTTTTTTGG 442
* ** * * * * * * ** * * ** * ** * * * *
consensus_4528#0 ATTGCGATCAGCATGGAATATCCTGTTAGGCCACCTTTTTTCACATTGCAATTGCTTTCG 650
consensus_4528#1 GTGGGGGTGGGTAAGAGCCAATGCAAGATATCCACTTTTTTCACG-----GTCATCATCA 497
* * * * * * * * * * ********** * **
consensus_4528#0 GGAAAGACTGAAGCTTTAAAATGGCACAATGATCTTAGAGCAATGGAAGCTGAGGTGAAT 710
consensus_4528#1 GAAGATA-TGTAACCGTACAACATTCTAAAACTCTTGTTGCATC-----CTGTATT--CT 549
* * * * ** * * ** ** ** **** *** *** * *
consensus_4528#0 CTTCACATCCTTCAGGTTGTACCTTCGTCATATGAGGACTACATACTTACTCACCAAATT 770
consensus_4528#1 TCCAGCACGTTTTGGG--AAGCCTTCAGCAT-TAAGCAAAAGAACAGCTTGCACCAAGTA 606
** ** ** ***** *** * ** * * * ****** *
consensus_4528#0 CTG--TGCCTGGCTATGTT-ATTTGATATGCATTTTGATGAGGATCATGGTAAAAGAAAG 827
consensus_4528#1 TAGCTTGCGTGCCAAGGGTGATCAGACTTGTATGT-GACTTGAGTCAT--CTGATGTTTC 663
* *** ** * * * * ** ** ** ** * ** * **** * *
consensus_4528#0 GTTACTTCAGTGATTGATGTGGGTCTATGTAAACCAGTTAGTGGAACCATGCTTACCAGA 887
consensus_4528#1 ATCACTTGGGTGACATCTGTGAGGTAATGCATTGCTCGTCCTGAGTCC----TGACCCAA 719
* **** **** **** * *** * * * ** ** * *** *
consensus_4528#0 TCAGTCAGGGGAAGAGACCGCAGACAGACTATTTATTGGCGCAGCGCTGATTGGTCTTCT 947
consensus_4528#1 AAAAAAAAAAAAAAAAACAAAAAAAA---------------------------------- 745
* * ** * ** * * *
consensus_4528#0 AGNTGGTTATAGAGTATGCATAATGCTGGCCCTACTGAATCAAGCATCTCGTCTCATTTT 1007
consensus_4528#1 ------------------------------------------------------------
consensus_4528#0 GAGGAAATTGGATGCTGTCAGTGACAGTCTTTCATTTCNTTCCCGNCNGGGAAAAAGGTG 1067
consensus_4528#1 ------------------------------------------------------------
consensus_4528#0 NCTACATGGATTCATGGGTATTCCTACTGGCTTGACATANATTATGAGCTTTTTTCNTTT 1127
consensus_4528#1 ------------------------------------------------------------
consensus_4528#0 TNTTTGGTTGCT 1139
consensus_4528#1 ------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||