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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4532#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1156 fasta sequence
[GGGACGGGGGCTAGCGACGGCAGCAGTGGGCGAGGGCCGAAGCAGGGGCTAGATCTTCGACGGCGCCGGCGGCGGACGGGGGCCAAAGCGGCGGTGGCCGGTGCCTCCTCCAACCGCATCCACAGCCTCCTCCGTCCCTCCCCGTGGCGTCGTTGCCGGCGGTGGCGGTGCGGCGGCCCGCGAGCGGCGGAGACCCGGGAGTAGCACTAGAGCGGCGACTGCGGCGTGCGGGCGAGGGCCGGAGCAGCGGCGGCGGCAGAGATCGAGACCGCCGTGGAGGTTGGCCGTCGGAAGGAAGAAAACGGGCCACTAGAACGGCTGCGTCCTCGCCATCCTCGGCCTCGCCACCCTCGGCCCTGCCACCGCACTATCCACCGATGCGCTCCACGCCCCCTCTGCCAGCCACGACACACCCACCTCTTCCGCTCTCCCGCCGCGCCCACGAACGGGTAAGGGCCGCCTGTGTCTCGCGTCGGCATCCCCTCGAAGATGGCGGCATCCGGTGGTGGCTTCTTCTGCACCTGCAGCGGCGGCGTTGAAGGTGGGAGGAGCAGCGCGGACGGGGGAGGCGGCGGCGCCGCCGATGGATGCGGTCGGCGTGCCAAGCCGGCCGACAACGACGCGACCCCACGGGAGTTGGGAGGCATCTGCATCAAGCATTCTCTTGCTGGTTCCCGAGTCAATCGGCAAGGGGCGACAGATGAGGACTGAGCTAGCAAGCAGCAGCAACAGACAGTGCATGTGTGTACTAACATCAAGCGGCAAGCCAACAAGCAAAGGGCTGACCGACCGAGCAAAGATGCAGATAGGCAAGCAGAGCAGCATATTCGCACGGACGGTGGCGCGGCCACGGAGGAGGGGACGCGAGGGACGGGAGCCTCGCCGGCCCTTGAGCACCCCCCCCATCGCCGACGCTCTAGCTCCCGTCCCTGCAACCGTGCGAATAAGGGTGGGCAGAAAAAAAAAACCGAACCGAAAAGATCGAGACGAGACCGAGAAATTTAGTCATCAATTCGGTCATAGATAGTGAAAGACCGATTTTGTTCGGTCAATTTAGTTAGTCTCCTCGGATAACCGAATAGACCAAAAAGACTGAATTATCAAAAAATGTCTAAATACAACCTAATAAGAGTCTTTACTCATAAGTGCTTACGAA]
[+] EMBL AK110768 [GGGACGGGGGCTAGCGACGGCAGCAGTGGGCGAGGGCCGAAGCAGGGGCTAGATCTTCGACGGCGCCGGCGGCGGACGGGGGCCAAAGCGGCGGTGGCCGGTGCCTCCTCCAACCGCATCCACAGCCTCCTCCGTCCCTCCCCGTGGCGTCGTTGCCGGCGGTGGCGGTGCGGCGGCCCGCGAGCGGCGGAGACCCGGGAGTAGCACTAGAGCGGCGACTGCGGCGTGCGGGCGAGGGCCGGAGCAGCGGCGGCGGCAGAGATCGAGACCGCCGTGGAGGTTGGCCGTCGGAAGGAAGAAAACGGGCCACTAGAACGGCTGCGTCCTCGCCATCCTCGGCCTCGCCACCCTCGGCCCTGCCACCGCACTATCCACCGATGCGCTCCACGCCCCCTCTGCCAGCCACGACACACCCACCTCTTCCGCTCTCCCGCCGCGCCCACGAACGGGTAAGGGCCGCCTGTGTCTCGCGTCGGCATCCCCTCGAAGATGGCGGCATCCGGTGGTGGCTTCTTCTGCACCTGCAGCGGCGGCGTTGAAGGTGGGAGGAGCAGCGCGGACGGGGGAGGCGGCGGCGCCGCCGATGGATGCGGTCGGCGTGCCAAGCCGGCCGACAACGACGCGACCCCACGGGAGTTGGGAGGCATCTGCATCAAGCATTCTCTTGCTGGTTCCCGAGTCAATCGGCAAGGGGCGACAGATGAGGACTGAGCTAGCAAGCAGCAGCAACAGACAGTGCATGTGTGTACTAACATCAAGCGGCAAGCCAACAAGCAAAGGGCTGACCGACCGAGCAAAGATGCAGATAGGCAAGCAGAGCAGCATATTCGCACGGACGGTGGCGCGGCCACGGAGGAGGGGACGCGAGGGACGGGAGCCTCGCCGGCCCTTGAGCACCCCCCCCATCGCCGACGCTCTAGCTCCCGTCCCTGCAACCGTGCGAATAAGGGTGGGCAGAAAAAAAAAACCGAACCGAAAAGATCGAGACGAGACCGAGAAATTTAGTCATCAATTCGGTCATAGATAGTGAAAGACCGATTTTGTTCGGTCAATTTAGTTAGTCTCCTCGGATAACCGAATAGACCAAAAAGACTGAATTATCAAAAAATGTCTAAATACAACCTAATAAGAGTCTTTACTCATAAGTGCTTACGAA]
consensusID : consensus_4532#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 855 fasta sequence
[CCCTCTCCCCTACAGCCGTTCGCGGGGAGCGAGCGGAGGCGGGCGGGGGCTGAAGCAGCGGCGGACGGCGGGAGCTGAAGCGGCGGCGGCGGAGGTAGGTTGGAGTCCATGTCGTGCCGCTGCCACCACCACCCGCACCACCCGACGGCCGGCATCGAGATGTCGTCGGCGGCCGAGCTCCCCTCTGCGGGTGTCGCGGCGGCTGGCGGAGACTGCGGCGAGCGGCGGCGGCTGCACGGAGTCCCGAGCGGCGGAGGCGCAGGTGTGGAGCGGCGGCCTGCGAGCGGCGCGACGGAGACGCGGGTGTGGCGGCGGCGACCTGCAGGTCGAGCAGGGCGCGGCCGAGCTCGCCGTACCCCGCCGCGTGTGCCTCCCGCCGCCGCCGCTGTGGTCTCCTCCATCTTCGCCGTGGTGGAGCTCAGCCCGGGCACCGCCGCCGCCCGCAGGCGATCAGCTACACCGTCCGCTCCGACCGCCTCGACGCGCTCGCGCTGCTCCTCCTTCTCGCAGCAGATATACCCCATGGTGAACGAAGACGCGCAGTACGGCGACGAGCTCCGGGCCGTGTGCCCGCCGGATGCGGAGGAGACGGCGTGGGTGCACCTGGACCACGGCACGCCGGGGGAGCTCGACAGCCAGTGCTACGTACAGGAACGTGCTCGCCGGGAAGGTGCTGGCTATTCAACTCGGATCACTGGGCACTGATCAGCGAAGCGGCGACGAGGCAGATGGTCGAGGACAACGCGGTGAACCAGTCAGCCCTTTGCTTGTTGGCTTGCCGCTTGATGTTAGTACACACATGCACTGCCTGTTGCTACCGCTTGTGCTTGCTAGCCGCAGTCCAGCCAGTCCTCA]
[+] EMBL AK109594 [CCCTCTCCCCTACAGCCGTTCGCGGGGAGCGAGCGGAGGCGGGCGGGGGCTGAAGCAGCGGCGGACGGCGGGAGCTGAAGCGGCGGCGGCGGAGGTAGGTTGGAGTCCATGTCGTGCCGCTGCCACCACCACCCGCACCACCCGACGGCCGGCATCGAGATGTCGTCGGCGGCCGAGCTCCCCTCTGCGGGTGTCGCGGCGGCTGGCGGAGACTGCGGCGAGCGGCGGCGGCTGCACGGAGTCCCGAGCGGCGGAGGCGCAGGTGTGGAGCGGCGGCCTGCGAGCGGCGCGACGGAGACGCGGGTGTGGCGGCGGCGACCTGCAGGTCGAGCAGGGCGCGGCCGAGCTCGCCGTACCCCGCCGCGTGTGCCTCCCGCCGCCGCCGCTGTGGTCTCCTCCATCTTCGCCGTGGTGGAGCTCAGCCCGGGCACCGCCGCCGCCCGCAGGCGATCAGCTACACCGTCCGCTCCGACCGCCTCGACGCGCTCGCGCTGCTCCTCCTTCTCGCAGCAGATATACCCCATGGTGAACGAAGACGCGCAGTACGGCGACGAGCTCCGGGCCGTGTGCCCGCCGGATGCGGAGGAGACGGCGTGGGTGCACCTGGACCACGGCACGCCGGGGGAGCTCGACAGCCAGTGCTACGTACAGGAACGTGCTCGCCGGGAAGGTGCTGGCTATTCAACTCGGATCACTGGGCACTGATCAGCGAAGCGGCGACGAGGCAGATGGTCGAGGACAACGCGGTGAACCAGTCAGCCCTTTGCTTGTTGGCTTGCCGCTTGATGTTAGTACACACATGCACTGCCTGTTGCTACCGCTTGTGCTTGCTAGCCGCAGTCCAGCCAGTCCTCA]
[+] EMBL CF325446 [ GGGGAGCGAGCGGAGGCGGGCGGGGGCTGAAGCAGCGGCGGACGGCGGGAGCTGAAGCGGCGGCGGCGGAGGTAGGTTGGAGTCCATGTCGTGCCGCTGCCACCACCACCCGCACCACCCGACGGCCGGCATCGAGATGTCGTCGGCGGCCGAGCTCCCCTCTGCGGGTGTCGCGGCGGCTGGCGGAGACT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4532#0 GGGACGGGGGCTAGCGACGGCAGCAGTGGGCGAGGGCCGAAGCAGGGGCTAG-ATCTTCG 59
consensus_4532#1 --------CCCTCTCCCCTACAGCCGTTCGCGGGGAGCGA-GCGGAGGCGGGCGGGGGCT 51
** * * **** ** *** ** *** ** * *** * *
consensus_4532#0 ACGGCGCCGGCGGCGGACGGGGGCCAAAGCGGCGGTGGCCGGTGCCTCCTCCAACCGCAT 119
consensus_4532#1 GAAGCAGCGGCGGACGGCGGGAGCTGAAGCGGCGGCGGCGGAGGTAGGTTGGAGTC-CAT 110
** ****** * **** ** ********* *** * * * * * ***
consensus_4532#0 CCACAGCCTCCTCCGTCCCTCCCCGTGGCGTC--GTTGCCGGCGGTGGCGGTGCGGCGGC 177
consensus_4532#1 GTCGTGCCGCTGCCACCACCACCCGCACCACCCGACGGCCGGCATCGAGATGTCGTCGGC 170
*** * ** * * **** * * ****** * ** ****
consensus_4532#0 CCGCGAGCGGCGGAGACCCGGGAGTAGCACTAG--AGCGGCGACTGCGGCGTGCGGGCGA 235
consensus_4532#1 GGCCGAGCTCCCCTC-TGCGGGTGTCGCGGCGGCTGGCGGAGACTGCGGCGAGCGG-CGG 228
***** * **** ** ** * **** ********** **** **
consensus_4532#0 GGGCCGGA-GCAGCGGCG-GCGGCAGAGATCGAGAC-CGCCGTGGAGGTTGGCCGTCGGA 292
consensus_4532#1 CGGCTGCACGGAGTCCCGAGCGGCGGAGGCGCAGGTGTGGAGCGGCGGCCTGCGAGCGGC 288
*** * * * ** ** ***** *** ** * * ** ** ** ***
consensus_4532#0 AGGAAGAAAACGGGCCACTAGAACGGCTGCGTCCTCGCCATCCTCGGCCTCGCCACCCTC 352
consensus_4532#1 GCGACGGAGACG--CGGGTGTGGCGGCGGCGACCT-------GCAGGTCGAGCAGGGCGC 339
** * * *** * * **** *** *** ** * ** * *
consensus_4532#0 GGCCCTGC-CACCGCACTATCCACCG-ATGCGCTCCACGCCCCCTCTGCCAGCCACGACA 410
consensus_4532#1 GGCCGAGCTCGCCGTAC--CCCGCCGCGTGTGCCTCCCGCCGCCGCCGCTGTG---GTCT 394
**** ** * *** ** ** *** ** ** * **** ** * ** * *
consensus_4532#0 CACCCACCTCTTCCGCTCTCCCGCCGCGCCCACGAACGGGTAAGGGCCGCCTGTGTCTCG 470
consensus_4532#1 CCTCCATCTTCGCCGTGGTGGAGCTCAGCCCGGGCACCGCCGCCGCCCGCAGGCGATCAG 454
* *** ** *** * ** **** * ** * * **** * * *
consensus_4532#0 CGTCGGCATCCCCTC-GAAGATGGCGGCATCCGGTGGTGGCTTCTTCTGCACCTGCAGCG 529
consensus_4532#1 CTACACCGTCCGCTCCGACCGCCTCGACGCGCTCGCGCTGCTCCTCCTT--CTCGCAGCA 512
* * * *** *** ** ** * * * *** ** ** * *****
consensus_4532#0 GCGGCGTTGAA-GGTGGGAGGAGCAGCGCGG-ACGGGGGAGGCGGCGGCGCCG-----CC 582
consensus_4532#1 GATATACCCCATGGTGAACGAAGACGCGCAGTACGGCGACGAGCTCCGGGCCGTGTGCCC 572
* * **** * ** **** * **** * * * * **** **
consensus_4532#0 GATGGATGCGGTCGGCGTGCCAAGCCGGC-CGACAACGACGCGACCCCACGGGAGTTGGG 641
consensus_4532#1 GCCGGATGCGGAGGAGACGGCGTGGGTGCACCTGGACCACGGCACGCCGGGGGAGCTCGA 632
* ******** * * * * ** * ** *** ** ** ***** * *
consensus_4532#0 AGGCATCTGCATCAAGCATTCTCTTGCTGGTTCCCGAGTCAATCGGCAAGGGGC---GAC 698
consensus_4532#1 CAGCCAGTGCTACGTACAGGAACGTGCTCGCCGGGAAGGTGCTGGCTATTCAACTCGGAT 692
** *** * ** * **** * ** * * * * **
consensus_4532#0 AGATGAGGACTGAGCTAGCAAGCAGCAGCAACAGACAGTGCATGTGTGTACTAACATCAA 758
consensus_4532#1 CACTGGGCACTGATCAGCGAAGCGGCGACG--AGGCAG-------ATGGTCGAGGACAAC 743
** * ***** * **** ** * ** *** ** * * * *
consensus_4532#0 GCGGCAAGCCAACAAGCAAAGGGCTGACCGACCGAGCAAA-GATGCAGATAGGCAAGCAG 817
consensus_4532#1 GCGGTGAACCAGTCAGCCCTTTGCTTGTTGGCTTGCCGCTTGATGTTAGTACACACAT-G 802
**** * *** *** *** * * * **** ** ** *
consensus_4532#0 AGCAGCATATTCGCACGGACGGTGGCG--CGGCCACGGAGGAGGGGACGCGAGGGACGGG 875
consensus_4532#1 CACTGCCTGTTGCTACCGCTTGTGCTTGCTAGCCGCAGTCCAGCCAGTCCTCA------- 855
* ** * ** ** * *** *** * * ** *
consensus_4532#0 AGCCTCGCCGGCCCTTGAGCACCCCCCCCATCGCCGACGCTCTAGCTCCCGTCCCTGCAA 935
consensus_4532#1 ------------------------------------------------------------
consensus_4532#0 CCGTGCGAATAAGGGTGGGCAGAAAAAAAAAACCGAACCGAAAAGATCGAGACGAGACCG 995
consensus_4532#1 ------------------------------------------------------------
consensus_4532#0 AGAAATTTAGTCATCAATTCGGTCATAGATAGTGAAAGACCGATTTTGTTCGGTCAATTT 1055
consensus_4532#1 ------------------------------------------------------------
consensus_4532#0 AGTTAGTCTCCTCGGATAACCGAATAGACCAAAAAGACTGAATTATCAAAAAATGTCTAA 1115
consensus_4532#1 ------------------------------------------------------------
consensus_4532#0 ATACAACCTAATAAGAGTCTTTACTCATAAGTGCTTACGAA 1156
consensus_4532#1 -----------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||