These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4532#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1156 fasta sequence [GGGACGGGGGCTAGCGACGGCAGCAGTGGGCGAGGGCCGAAGCAGGGGCTAGATCTTCGACGGCGCCGGCGGCGGACGGGGGCCAAAGCGGCGGTGGCCGGTGCCTCCTCCAACCGCATCCACAGCCTCCTCCGTCCCTCCCCGTGGCGTCGTTGCCGGCGGTGGCGGTGCGGCGGCCCGCGAGCGGCGGAGACCCGGGAGTAGCACTAGAGCGGCGACTGCGGCGTGCGGGCGAGGGCCGGAGCAGCGGCGGCGGCAGAGATCGAGACCGCCGTGGAGGTTGGCCGTCGGAAGGAAGAAAACGGGCCACTAGAACGGCTGCGTCCTCGCCATCCTCGGCCTCGCCACCCTCGGCCCTGCCACCGCACTATCCACCGATGCGCTCCACGCCCCCTCTGCCAGCCACGACACACCCACCTCTTCCGCTCTCCCGCCGCGCCCACGAACGGGTAAGGGCCGCCTGTGTCTCGCGTCGGCATCCCCTCGAAGATGGCGGCATCCGGTGGTGGCTTCTTCTGCACCTGCAGCGGCGGCGTTGAAGGTGGGAGGAGCAGCGCGGACGGGGGAGGCGGCGGCGCCGCCGATGGATGCGGTCGGCGTGCCAAGCCGGCCGACAACGACGCGACCCCACGGGAGTTGGGAGGCATCTGCATCAAGCATTCTCTTGCTGGTTCCCGAGTCAATCGGCAAGGGGCGACAGATGAGGACTGAGCTAGCAAGCAGCAGCAACAGACAGTGCATGTGTGTACTAACATCAAGCGGCAAGCCAACAAGCAAAGGGCTGACCGACCGAGCAAAGATGCAGATAGGCAAGCAGAGCAGCATATTCGCACGGACGGTGGCGCGGCCACGGAGGAGGGGACGCGAGGGACGGGAGCCTCGCCGGCCCTTGAGCACCCCCCCCATCGCCGACGCTCTAGCTCCCGTCCCTGCAACCGTGCGAATAAGGGTGGGCAGAAAAAAAAAACCGAACCGAAAAGATCGAGACGAGACCGAGAAATTTAGTCATCAATTCGGTCATAGATAGTGAAAGACCGATTTTGTTCGGTCAATTTAGTTAGTCTCCTCGGATAACCGAATAGACCAAAAAGACTGAATTATCAAAAAATGTCTAAATACAACCTAATAAGAGTCTTTACTCATAAGTGCTTACGAA] [+] EMBL AK110768 [GGGACGGGGGCTAGCGACGGCAGCAGTGGGCGAGGGCCGAAGCAGGGGCTAGATCTTCGACGGCGCCGGCGGCGGACGGGGGCCAAAGCGGCGGTGGCCGGTGCCTCCTCCAACCGCATCCACAGCCTCCTCCGTCCCTCCCCGTGGCGTCGTTGCCGGCGGTGGCGGTGCGGCGGCCCGCGAGCGGCGGAGACCCGGGAGTAGCACTAGAGCGGCGACTGCGGCGTGCGGGCGAGGGCCGGAGCAGCGGCGGCGGCAGAGATCGAGACCGCCGTGGAGGTTGGCCGTCGGAAGGAAGAAAACGGGCCACTAGAACGGCTGCGTCCTCGCCATCCTCGGCCTCGCCACCCTCGGCCCTGCCACCGCACTATCCACCGATGCGCTCCACGCCCCCTCTGCCAGCCACGACACACCCACCTCTTCCGCTCTCCCGCCGCGCCCACGAACGGGTAAGGGCCGCCTGTGTCTCGCGTCGGCATCCCCTCGAAGATGGCGGCATCCGGTGGTGGCTTCTTCTGCACCTGCAGCGGCGGCGTTGAAGGTGGGAGGAGCAGCGCGGACGGGGGAGGCGGCGGCGCCGCCGATGGATGCGGTCGGCGTGCCAAGCCGGCCGACAACGACGCGACCCCACGGGAGTTGGGAGGCATCTGCATCAAGCATTCTCTTGCTGGTTCCCGAGTCAATCGGCAAGGGGCGACAGATGAGGACTGAGCTAGCAAGCAGCAGCAACAGACAGTGCATGTGTGTACTAACATCAAGCGGCAAGCCAACAAGCAAAGGGCTGACCGACCGAGCAAAGATGCAGATAGGCAAGCAGAGCAGCATATTCGCACGGACGGTGGCGCGGCCACGGAGGAGGGGACGCGAGGGACGGGAGCCTCGCCGGCCCTTGAGCACCCCCCCCATCGCCGACGCTCTAGCTCCCGTCCCTGCAACCGTGCGAATAAGGGTGGGCAGAAAAAAAAAACCGAACCGAAAAGATCGAGACGAGACCGAGAAATTTAGTCATCAATTCGGTCATAGATAGTGAAAGACCGATTTTGTTCGGTCAATTTAGTTAGTCTCCTCGGATAACCGAATAGACCAAAAAGACTGAATTATCAAAAAATGTCTAAATACAACCTAATAAGAGTCTTTACTCATAAGTGCTTACGAA] consensusID : consensus_4532#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 855 fasta sequence [CCCTCTCCCCTACAGCCGTTCGCGGGGAGCGAGCGGAGGCGGGCGGGGGCTGAAGCAGCGGCGGACGGCGGGAGCTGAAGCGGCGGCGGCGGAGGTAGGTTGGAGTCCATGTCGTGCCGCTGCCACCACCACCCGCACCACCCGACGGCCGGCATCGAGATGTCGTCGGCGGCCGAGCTCCCCTCTGCGGGTGTCGCGGCGGCTGGCGGAGACTGCGGCGAGCGGCGGCGGCTGCACGGAGTCCCGAGCGGCGGAGGCGCAGGTGTGGAGCGGCGGCCTGCGAGCGGCGCGACGGAGACGCGGGTGTGGCGGCGGCGACCTGCAGGTCGAGCAGGGCGCGGCCGAGCTCGCCGTACCCCGCCGCGTGTGCCTCCCGCCGCCGCCGCTGTGGTCTCCTCCATCTTCGCCGTGGTGGAGCTCAGCCCGGGCACCGCCGCCGCCCGCAGGCGATCAGCTACACCGTCCGCTCCGACCGCCTCGACGCGCTCGCGCTGCTCCTCCTTCTCGCAGCAGATATACCCCATGGTGAACGAAGACGCGCAGTACGGCGACGAGCTCCGGGCCGTGTGCCCGCCGGATGCGGAGGAGACGGCGTGGGTGCACCTGGACCACGGCACGCCGGGGGAGCTCGACAGCCAGTGCTACGTACAGGAACGTGCTCGCCGGGAAGGTGCTGGCTATTCAACTCGGATCACTGGGCACTGATCAGCGAAGCGGCGACGAGGCAGATGGTCGAGGACAACGCGGTGAACCAGTCAGCCCTTTGCTTGTTGGCTTGCCGCTTGATGTTAGTACACACATGCACTGCCTGTTGCTACCGCTTGTGCTTGCTAGCCGCAGTCCAGCCAGTCCTCA] [+] EMBL AK109594 [CCCTCTCCCCTACAGCCGTTCGCGGGGAGCGAGCGGAGGCGGGCGGGGGCTGAAGCAGCGGCGGACGGCGGGAGCTGAAGCGGCGGCGGCGGAGGTAGGTTGGAGTCCATGTCGTGCCGCTGCCACCACCACCCGCACCACCCGACGGCCGGCATCGAGATGTCGTCGGCGGCCGAGCTCCCCTCTGCGGGTGTCGCGGCGGCTGGCGGAGACTGCGGCGAGCGGCGGCGGCTGCACGGAGTCCCGAGCGGCGGAGGCGCAGGTGTGGAGCGGCGGCCTGCGAGCGGCGCGACGGAGACGCGGGTGTGGCGGCGGCGACCTGCAGGTCGAGCAGGGCGCGGCCGAGCTCGCCGTACCCCGCCGCGTGTGCCTCCCGCCGCCGCCGCTGTGGTCTCCTCCATCTTCGCCGTGGTGGAGCTCAGCCCGGGCACCGCCGCCGCCCGCAGGCGATCAGCTACACCGTCCGCTCCGACCGCCTCGACGCGCTCGCGCTGCTCCTCCTTCTCGCAGCAGATATACCCCATGGTGAACGAAGACGCGCAGTACGGCGACGAGCTCCGGGCCGTGTGCCCGCCGGATGCGGAGGAGACGGCGTGGGTGCACCTGGACCACGGCACGCCGGGGGAGCTCGACAGCCAGTGCTACGTACAGGAACGTGCTCGCCGGGAAGGTGCTGGCTATTCAACTCGGATCACTGGGCACTGATCAGCGAAGCGGCGACGAGGCAGATGGTCGAGGACAACGCGGTGAACCAGTCAGCCCTTTGCTTGTTGGCTTGCCGCTTGATGTTAGTACACACATGCACTGCCTGTTGCTACCGCTTGTGCTTGCTAGCCGCAGTCCAGCCAGTCCTCA] [+] EMBL CF325446 [ GGGGAGCGAGCGGAGGCGGGCGGGGGCTGAAGCAGCGGCGGACGGCGGGAGCTGAAGCGGCGGCGGCGGAGGTAGGTTGGAGTCCATGTCGTGCCGCTGCCACCACCACCCGCACCACCCGACGGCCGGCATCGAGATGTCGTCGGCGGCCGAGCTCCCCTCTGCGGGTGTCGCGGCGGCTGGCGGAGACT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4532#0 GGGACGGGGGCTAGCGACGGCAGCAGTGGGCGAGGGCCGAAGCAGGGGCTAG-ATCTTCG 59 consensus_4532#1 --------CCCTCTCCCCTACAGCCGTTCGCGGGGAGCGA-GCGGAGGCGGGCGGGGGCT 51 ** * * **** ** *** ** *** ** * *** * * consensus_4532#0 ACGGCGCCGGCGGCGGACGGGGGCCAAAGCGGCGGTGGCCGGTGCCTCCTCCAACCGCAT 119 consensus_4532#1 GAAGCAGCGGCGGACGGCGGGAGCTGAAGCGGCGGCGGCGGAGGTAGGTTGGAGTC-CAT 110 ** ****** * **** ** ********* *** * * * * * *** consensus_4532#0 CCACAGCCTCCTCCGTCCCTCCCCGTGGCGTC--GTTGCCGGCGGTGGCGGTGCGGCGGC 177 consensus_4532#1 GTCGTGCCGCTGCCACCACCACCCGCACCACCCGACGGCCGGCATCGAGATGTCGTCGGC 170 *** * ** * * **** * * ****** * ** **** consensus_4532#0 CCGCGAGCGGCGGAGACCCGGGAGTAGCACTAG--AGCGGCGACTGCGGCGTGCGGGCGA 235 consensus_4532#1 GGCCGAGCTCCCCTC-TGCGGGTGTCGCGGCGGCTGGCGGAGACTGCGGCGAGCGG-CGG 228 ***** * **** ** ** * **** ********** **** ** consensus_4532#0 GGGCCGGA-GCAGCGGCG-GCGGCAGAGATCGAGAC-CGCCGTGGAGGTTGGCCGTCGGA 292 consensus_4532#1 CGGCTGCACGGAGTCCCGAGCGGCGGAGGCGCAGGTGTGGAGCGGCGGCCTGCGAGCGGC 288 *** * * * ** ** ***** *** ** * * ** ** ** *** consensus_4532#0 AGGAAGAAAACGGGCCACTAGAACGGCTGCGTCCTCGCCATCCTCGGCCTCGCCACCCTC 352 consensus_4532#1 GCGACGGAGACG--CGGGTGTGGCGGCGGCGACCT-------GCAGGTCGAGCAGGGCGC 339 ** * * *** * * **** *** *** ** * ** * * consensus_4532#0 GGCCCTGC-CACCGCACTATCCACCG-ATGCGCTCCACGCCCCCTCTGCCAGCCACGACA 410 consensus_4532#1 GGCCGAGCTCGCCGTAC--CCCGCCGCGTGTGCCTCCCGCCGCCGCCGCTGTG---GTCT 394 **** ** * *** ** ** *** ** ** * **** ** * ** * * consensus_4532#0 CACCCACCTCTTCCGCTCTCCCGCCGCGCCCACGAACGGGTAAGGGCCGCCTGTGTCTCG 470 consensus_4532#1 CCTCCATCTTCGCCGTGGTGGAGCTCAGCCCGGGCACCGCCGCCGCCCGCAGGCGATCAG 454 * *** ** *** * ** **** * ** * * **** * * * consensus_4532#0 CGTCGGCATCCCCTC-GAAGATGGCGGCATCCGGTGGTGGCTTCTTCTGCACCTGCAGCG 529 consensus_4532#1 CTACACCGTCCGCTCCGACCGCCTCGACGCGCTCGCGCTGCTCCTCCTT--CTCGCAGCA 512 * * * *** *** ** ** * * * *** ** ** * ***** consensus_4532#0 GCGGCGTTGAA-GGTGGGAGGAGCAGCGCGG-ACGGGGGAGGCGGCGGCGCCG-----CC 582 consensus_4532#1 GATATACCCCATGGTGAACGAAGACGCGCAGTACGGCGACGAGCTCCGGGCCGTGTGCCC 572 * * **** * ** **** * **** * * * * **** ** consensus_4532#0 GATGGATGCGGTCGGCGTGCCAAGCCGGC-CGACAACGACGCGACCCCACGGGAGTTGGG 641 consensus_4532#1 GCCGGATGCGGAGGAGACGGCGTGGGTGCACCTGGACCACGGCACGCCGGGGGAGCTCGA 632 * ******** * * * * ** * ** *** ** ** ***** * * consensus_4532#0 AGGCATCTGCATCAAGCATTCTCTTGCTGGTTCCCGAGTCAATCGGCAAGGGGC---GAC 698 consensus_4532#1 CAGCCAGTGCTACGTACAGGAACGTGCTCGCCGGGAAGGTGCTGGCTATTCAACTCGGAT 692 ** *** * ** * **** * ** * * * * ** consensus_4532#0 AGATGAGGACTGAGCTAGCAAGCAGCAGCAACAGACAGTGCATGTGTGTACTAACATCAA 758 consensus_4532#1 CACTGGGCACTGATCAGCGAAGCGGCGACG--AGGCAG-------ATGGTCGAGGACAAC 743 ** * ***** * **** ** * ** *** ** * * * * consensus_4532#0 GCGGCAAGCCAACAAGCAAAGGGCTGACCGACCGAGCAAA-GATGCAGATAGGCAAGCAG 817 consensus_4532#1 GCGGTGAACCAGTCAGCCCTTTGCTTGTTGGCTTGCCGCTTGATGTTAGTACACACAT-G 802 **** * *** *** *** * * * **** ** ** * consensus_4532#0 AGCAGCATATTCGCACGGACGGTGGCG--CGGCCACGGAGGAGGGGACGCGAGGGACGGG 875 consensus_4532#1 CACTGCCTGTTGCTACCGCTTGTGCTTGCTAGCCGCAGTCCAGCCAGTCCTCA------- 855 * ** * ** ** * *** *** * * ** * consensus_4532#0 AGCCTCGCCGGCCCTTGAGCACCCCCCCCATCGCCGACGCTCTAGCTCCCGTCCCTGCAA 935 consensus_4532#1 ------------------------------------------------------------ consensus_4532#0 CCGTGCGAATAAGGGTGGGCAGAAAAAAAAAACCGAACCGAAAAGATCGAGACGAGACCG 995 consensus_4532#1 ------------------------------------------------------------ consensus_4532#0 AGAAATTTAGTCATCAATTCGGTCATAGATAGTGAAAGACCGATTTTGTTCGGTCAATTT 1055 consensus_4532#1 ------------------------------------------------------------ consensus_4532#0 AGTTAGTCTCCTCGGATAACCGAATAGACCAAAAAGACTGAATTATCAAAAAATGTCTAA 1115 consensus_4532#1 ------------------------------------------------------------ consensus_4532#0 ATACAACCTAATAAGAGTCTTTACTCATAAGTGCTTACGAA 1156 consensus_4532#1 ----------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||