These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4536#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 343 fasta sequence [GGGGCATCCAAGGTGAACATTTCCTTGGTGGTCCATGACAGTGAGGCAAAGCAGTGCGTTCAAGCCCTCCACTCAGCATTCTTTGTATTATTGGTTTCTTGCCAGAAGTCAATGATATTCTGCAGGACGACTCTGTGGCACATTCCAATGGCACAGTTTACAGGCATTAGTCAGAAGTTTAATCCTTATGTTGTACTGTAGTTATACCATTTGCAGCCTCAGAATCTGATCGTTCTCAGGCTAAAAACCCAATGTTGTAGGAGGGAAGGAGCAATTCCGGCTTTTTATAGTATTCTAGTTGGCTCTGGTTTACTACCAAAATGGGCATACTACCATTGTTACC] [+] EMBL CF325513 [GGGGCATCCAAGGTGAACATTTCCTTGGTGGTCCATGACAGTGAGGCAAAGCAGTGCGTTCAAGCCCTCCACTCAGCATTCTTTGTATTATTGGTTTCTTGCCAGAAGTCAATGATATTCTGCAGGACGACTCTGTGGCACATTCCAATGGCACAGTTTACAGGCATTAGTCAGAAGTTTAATCCTTATGTTGTACTGTAGTTATACCATTTGCAGCCTCAGAATCTGATCGTTCTCAGGCTAAAAACCCAATGTTGTAGGAGGGAAGGAGCAATTCCGGCTTTTTATAGTATTCTAGTTGGCTCTGGTTTACTACCAAAATGGGCATACTACCATTGTTACC] consensusID : consensus_4536#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 186 fasta sequence [ATGGACTGAAGGAGTAATTCCGGCTTTTTATAGTATTCTAGTTGGCTCTGGTTTACTACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF318430 [ATGGACTGAAGGAGTAATTCCGGCTTTTTATAGTATTCTAGTTGGCTCTGGTTTACTACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ] [+] EMBL CF327002 [ GTAATTCCGGCTTTTTATAGTATTCTAGTTGGCTCTGGTTTACTACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4536#0 GGGGCATCCAAGGTGAACATTTCCTTGGTGGTCCATGACAGTGAGGCAAAGCAGTGCGTT 60 consensus_4536#1 ----------------------------------------ATGGACTGAAGGAGTA-ATT 19 ** *** *** ** consensus_4536#0 CAAGCCCTCCACTCAGCATTCTTTGTATTATTGGTTTCTTGCCAGAAGTCAATGATATTC 120 consensus_4536#1 CCGGCTTTTTAT--AGTATTCTAGTTGGCTCTGGTTTACTACCAAAAAAAAAAAAAAAAA 77 * ** * * ** ***** * ****** * *** ** ** * * consensus_4536#0 TGCAGGACGACTCTGTGGCACATTCCAATGGCACAGTTTACAGGCATTAGTCAGAAGTTT 180 consensus_4536#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 137 * * * * * ** * * * * * * * ** consensus_4536#0 AATCCTTATGTTGTACTGTAGTTATACCATTTGCAGCCTCAGAATCTGATCGTTCTCAGG 240 consensus_4536#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------- 186 ** * * * * * * * * ** * consensus_4536#0 CTAAAAACCCAATGTTGTAGGAGGGAAGGAGCAATTCCGGCTTTTTATAGTATTCTAGTT 300 consensus_4536#1 ------------------------------------------------------------ consensus_4536#0 GGCTCTGGTTTACTACCAAAATGGGCATACTACCATTGTTACC 343 consensus_4536#1 ------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||