Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4540 cluster # 4540       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4540#0 length = 409 sequences # 3  

consensusID : consensus_4540#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 409
fasta sequence
                              [GGNGAAGCGGGTGAAGGCCCAGATCTGGG-ACACCGCGGGGCAGGAGAGGTACCGCGCCGTCACCAGCGCCTACTACCGCGGCGCCCTCGGCGCCAT-GCTCGTCTACGACGTCACCAGCCGCCGGAGCTTCCACCACGCCGCCCGCTGCTGGAGATGGACGGCATCAACGGCGACGCCGCC-GCCAAC-GCCAACGCCGCGCTCATGCTCAGGGGCACCAAGCTCTCGCTCTCCGACGAGCTCTCCATCATGGAGACCAGCGCCATCAAGAGAGTGAGCAGGTGCTCATGCTCTTAATTACTTACTTTAGACGTCATC-GCTCATCGCCATCGAGAGAGTACTCATGCTCTTGACATCATCATCATCATCGCAAGTTCATAATATACATGGATGACAGATCTTACTGCAAAAA]

[+] EMBL AU161770             [GGNGAAGCGGGTGAAGGCCCAGATCTGGGAACACCGCGGGGCAGGAGAGGTACCGCGCCGTCACCAGCGCCTACTAC  CGNCGCCCTCGGCGCCAT G  CNTCTACGACGTCACCAGNCGCCGGAGCTTCCACCACGCCGCCCGCTGCTGGAGATGGACGGCATCAA  GCGACGCCGCC GCCAAC GCCAACGCCGCGCTCATGCTCAGGGGCACCAAGCTCTCGCTCTCCGACGAGCTCTCCATCATGGAGACCAGCGCCATCAAGAGAGTGAGCAGGTGCTCATGCTCTTAATTACTTACTTTAGACGTCATC GCTCATCGCCATCGAGAGAGTACTCATGCTCTTGACATCATCATCATCATCGCAAGTTCATAATATACATGGATGACAGATCTTACTGCAAAA ]
[+] EMBL AU223447             [  gGAAGCGGGTGAAGGCCCAGATCTGGG ACACCGCGGGGCAGGAGAGGTACCGCGCCGTCACCAGCGCCTACTACCGCGGCGCCCTCGGCGCCAT GCTCGTCTACGACGTCACCAGCCGCCGGAGCTTCCACCACGCCGCCCGCTGCTGGAGATGGACGGCATCAACGGCGACGCCGCCTGCCAACTGCCAACGCCGCGCTCATGCTCAGGGGCACCAAGCTCTCGCTCTCCGACGAGCTCTCCATCATGGAGACCAGCGCCATCAAGAGAGTGAGCAGGTGCTCATGCTCTTAATTACTTACTTTAGACGTCATCGGCTCATCGCCATCGAGAGAGTACTCATGCTCTTGACATCATCATCATCATCGCAAGTTCATAATATACATGGATGACAGATCTTACTGCAAAAA]
[+] EMBL OS1321899            [   GAAGCGGGTGAAGGCCCAGATCTGGG ACACCGCGGGGCAGGAGAGGTACCGCGCCGTCACCAGCGCCTACTACCGCGGCGCCCTCGGC CANTNGCTCGTNTACGACGTCACCAGCCGCCGGAGCTTCCACCACGCCGCCCGCTGCTGGAGATGGACGGCATCAACGGCGACGCCGCC GCCAAC GCCAACGCCGCGCTCATGCTCAGGGGCACCAAGCTCTCGCTCTCCGACGAGCTCTCCATCATGGAGACCAGCGCCATCAAGAGAGTGAGCAGGTGCTCATGNTCTTAATTACTTACTTTAGACGTCAT                                                                                                ]


>consensus_4540#0 GGNGAAGCGGGTGAAGGCCCAGATCTGGGACACCGCGGGGCAGGAGAGGTACCGCGCCGT CACCAGCGCCTACTACCGCGGCGCCCTCGGCGCCATGCTCGTCTACGACGTCACCAGCCG CCGGAGCTTCCACCACGCCGCCCGCTGCTGGAGATGGACGGCATCAACGGCGACGCCGCC GCCAACGCCAACGCCGCGCTCATGCTCAGGGGCACCAAGCTCTCGCTCTCCGACGAGCTC TCCATCATGGAGACCAGCGCCATCAAGAGAGTGAGCAGGTGCTCATGCTCTTAATTACTT ACTTTAGACGTCATCGCTCATCGCCATCGAGAGAGTACTCATGCTCTTGACATCATCATC ATCATCGCAAGTTCATAATATACATGGATGACAGATCTTACTGCAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)