cluster # 4541

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Oryza sativa
cluster # 4541 cluster # 4541 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4541#0 length = 941 sequences # 2

consensus_4541#1 length = 304 sequences # 1

consensusID : consensus_4541#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 941
fasta sequence

                              [CAGAGAGCGAAGCAAGCTCGAATCGATTTCCAACCCAGAGGATTTGATTAGCTTTGACGCAGACCAAGATCATCTGATCAATGGCGTCCATGCAGAAGAGCCGCGAGGAGCGCGCGGAGGCGGCGGCGCACAGGGCGGCCGACGAGCTCCACGCCGCCAGGCGGGACGAGCCTGGCGGCGGCGGAGGCGGCATGCTGGGCACCGTGCAGGAGAGCGCGCGGTCCCTCCTCGGCGCCGTCCGCGACAAGATCCCCGGGCCCGGCAGCGGCGGCGCTGGCGCAGGCGCAGCCGCCGGGGAGGGGAAGGCCGCCGAGGCGAAGGGCTTCGCGGCGGACAAGGCGGAGGGCGCGCGGCGCGCGCTCGCGGGATCCGCGGCGGCGAGGAAGGGCGAGACGGACGAGTCCGCGTGGCAGCACGGGGAGGACGTGCGGCGGCGCGCCGCGGAGAAGGCCGAGGAGGCGCGGCGGCGGAGCGAGCCTCAGCCGTCGTCGGAGGAGAAGGGGAGGTCGGCGACGGAGAACATCTACGGGTCGGCGGCGAGCGCGGCGGAGGCGTTCAGGCAGAAGATGACGATGCCGGAGGACGTGGTGGAGCAGAAGCGCGCCGAGGCTGCCGCCGGCGGGAACAAGGGAACAGCCGCCGCGACGGCGACGGCGACGAACACCGGCGGGGAGGCGGCGGCGGAGGAGGTGATGATGCGGGTGAAGGCGGCGGACCAGATGACGGGGCAGGCGTTCAACGACGTGGGCAAGATGGGGGAGGAGGGCA-CCGGCATGGCGGCCGGAGATGGTGGGCGCCGCCGCTGAGATCGCCGGAGCCGACCGCGCGGCGCCACGCCACGGTGTTTTTGCTCGTCGCGTTTTGTACTAATCTCAGTATAATCTGTAATGTAAATATGTAATGCGGCAGTTAAAAGTAATAAAATATCCCCTAAAAAAAAA]

[+] EMBL AK108165             [CAGAGAGCGAAGCAAGCTCGAATCGATTTCCAACCCAGAGGATTTGATTAGCTTTGACGCAGACCAAGATCATCTGATCAATGGCGTCCATGCAGAAGAGCCGCGAGGAGCGCGCGGAGGCGGCGGCGCACAGGGCGGCCGACGAGCTCCACGCCGCCAGGCGGGACGAGCCTGGCGGCGGCGGAGGCGGCATGCTGGGCACCGTGCAGGAGAGCGCGCGGTCCCTCCTCGGCGCCGTCCGCGACAAGATCCCCGGGCCCGGCAGCGGCGGCGCTGGCGCAGGCGCAGCCGCCGGGGAGGGGAAGGCCGCCGAGGCGAAGGGCTTCGCGGCGGACAAGGCGGAGGGCGCGCGGCGCGCGCTCGCGGGATCCGCGGCGGCGAGGAAGGGCGAGACGGACGAGTCCGCGTGGCAGCACGGGGAGGACGTGCGGCGGCGCGCCGCGGAGAAGGCCGAGGAGGCGCGGCGGCGGAGCGAGCCTCAGCCGTCGTCGGAGGAGAAGGGGAGGTCGGCGACGGAGAACATCTACGGGTCGGCGGCGAGCGCGGCGGAGGCGTTCAGGCAGAAGATGACGATGCCGGAGGACGTGGTGGAGCAGAAGCGCGCCGAGGCTGCCGCCGGCGGGAACAAGGGAACAGCCGCCGCGACGGCGACGGCGACGAACACCGGCGGGGAGGCGGCGGCGGAGGAGGTGATGATGCGGGTGAAGGCGGCGGACCAGATGACGGGGCAGGCGTTCAACGACGTGGGCAAGATGGGGGAGGAGGGCA CCGGCATGGCGGCCGGAGATGGTGGGCGCCGCCGCTGAGATCGCCGGAGCCGACCGCGCGGCGCCACGCCACGGTGTTTTTGCTCGTCGCGTTTTGTACTAATCTCAGTATAATCTGTAATGTAAATATGTAATGCGGCAGTTAAAAGTAATAAAATATCCCCTAA       ]
[+] EMBL BI803805             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GCGGACCAGATGACGGGGCAGGCGTTCAACGACGTGGGCAAGATGGGGGAGGAGGGCACCCGGCATGGCGGCCGGAGATGGTGGGCGCCGCCGCTGAGATCGCCGGAGCCGACCGCGCGGCGCCACGCCACGGTGTTTTTGCTCGTCGCGTTTTGTACTAATCTCAGTATAATCTGTAATGTAAATATGTAATGCGGCAGTTAAAAGTAATAAAATATCCCCTAAAAAAAAA]




>consensus_4541#0
CAGAGAGCGAAGCAAGCTCGAATCGATTTCCAACCCAGAGGATTTGATTAGCTTTGACGC
AGACCAAGATCATCTGATCAATGGCGTCCATGCAGAAGAGCCGCGAGGAGCGCGCGGAGG
CGGCGGCGCACAGGGCGGCCGACGAGCTCCACGCCGCCAGGCGGGACGAGCCTGGCGGCG
GCGGAGGCGGCATGCTGGGCACCGTGCAGGAGAGCGCGCGGTCCCTCCTCGGCGCCGTCC
GCGACAAGATCCCCGGGCCCGGCAGCGGCGGCGCTGGCGCAGGCGCAGCCGCCGGGGAGG
GGAAGGCCGCCGAGGCGAAGGGCTTCGCGGCGGACAAGGCGGAGGGCGCGCGGCGCGCGC
TCGCGGGATCCGCGGCGGCGAGGAAGGGCGAGACGGACGAGTCCGCGTGGCAGCACGGGG
AGGACGTGCGGCGGCGCGCCGCGGAGAAGGCCGAGGAGGCGCGGCGGCGGAGCGAGCCTC
AGCCGTCGTCGGAGGAGAAGGGGAGGTCGGCGACGGAGAACATCTACGGGTCGGCGGCGA
GCGCGGCGGAGGCGTTCAGGCAGAAGATGACGATGCCGGAGGACGTGGTGGAGCAGAAGC
GCGCCGAGGCTGCCGCCGGCGGGAACAAGGGAACAGCCGCCGCGACGGCGACGGCGACGA
ACACCGGCGGGGAGGCGGCGGCGGAGGAGGTGATGATGCGGGTGAAGGCGGCGGACCAGA
TGACGGGGCAGGCGTTCAACGACGTGGGCAAGATGGGGGAGGAGGGCACCGGCATGGCGG
CCGGAGATGGTGGGCGCCGCCGCTGAGATCGCCGGAGCCGACCGCGCGGCGCCACGCCAC
GGTGTTTTTGCTCGTCGCGTTTTGTACTAATCTCAGTATAATCTGTAATGTAAATATGTA
ATGCGGCAGTTAAAAGTAATAAAATATCCCCTAAAAAAAAA

consensusID : consensus_4541#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 304
fasta sequence

                              [GTGCGGCGGCGCGCCGGGNAGAAGGCCGAGNAGGCGNGGCGGCGGACAAGCNTCACCCGTCTTCGGAGGANAAGGGGAGGTCGGCNACGGANAACATCTACGGTTCGGCGGCGAGCCCGGCGGAGGCNTTCAGGCAGAANATNACGATGCCGGAGGACGTGGTGGAGCAGAAGCNCGCCGAGGCTNCCGCCGGCGGGAACAAGGGAACANCCGCCGCAACGGAACGGCAACGAACACCGGCGGGNAGGCGGCGGCGGAGGAGGTGATGATNCGGGTAAAGGCNGCGGACCAAATNACGGGGCAA]

[+] EMBL OSC667               [GTGCGGCGGCGCGCCGGGNAGAAGGCCGAGNAGGCGNGGCGGCGGACAAGCNTCACCCGTCTTCGGAGGANAAGGGGAGGTCGGCNACGGANAACATCTACGGTTCGGCGGCGAGCCCGGCGGAGGCNTTCAGGCAGAANATNACGATGCCGGAGGACGTGGTGGAGCAGAAGCNCGCCGAGGCTNCCGCCGGCGGGAACAAGGGAACANCCGCCGCAACGGAACGGCAACGAACACCGGCGGGNAGGCGGCGGCGGAGGAGGTGATGATNCGGGTAAAGGCNGCGGACCAAATNACGGGGCAA]




>consensus_4541#1
GTGCGGCGGCGCGCCGGGNAGAAGGCCGAGNAGGCGNGGCGGCGGACAAGCNTCACCCGT
CTTCGGAGGANAAGGGGAGGTCGGCNACGGANAACATCTACGGTTCGGCGGCGAGCCCGG
CGGAGGCNTTCAGGCAGAANATNACGATGCCGGAGGACGTGGTGGAGCAGAAGCNCGCCG
AGGCTNCCGCCGGCGGGAACAAGGGAACANCCGCCGCAACGGAACGGCAACGAACACCGG
CGGGNAGGCGGCGGCGGAGGAGGTGATGATNCGGGTAAAGGCNGCGGACCAAATNACGGG
GCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4541#0      CAGAGAGCGAAGCAAGCTCGAATCGATTTCCAACCCAGAGGATTTGATTAGCTTTGACGC 60
consensus_4541#1      ------------------------------------------------------------
                                                                                  

consensus_4541#0      AGACCAAGATCATCTGATCAATGGCGTCCATGCAGAAGAGCCGCGAGGAGCGCGCGGAGG 120
consensus_4541#1      ------------------------------------------------------------
                                                                                  

consensus_4541#0      CGGCGGCGCACAGGGCGGCCGACGAGCTCCACGCCGCCAGGCGGGACGAGCCTGGCGGCG 180
consensus_4541#1      ------------------------------------------------------------
                                                                                  

consensus_4541#0      GCGGAGGCGGCATGCTGGGCACCGTGCAGGAGAGCGCGCGGTCCCTCCTCGGCGCCGTCC 240
consensus_4541#1      ------------------------------------------------------------
                                                                                  

consensus_4541#0      GCGACAAGATCCCCGGGCCCGGCAGCGGCGGCGCTGGCGCAGGCGCAGCCGCCGGGGAGG 300
consensus_4541#1      ------------------------------------------------------------
                                                                                  

consensus_4541#0      GGAAGGCCGCCGAGGCGAAGGGCTTCGCGGCGGACAAGGCGGAGGGCGCGCGGCGCGCGC 360
consensus_4541#1      ------------------------------------------------------------
                                                                                  

consensus_4541#0      TCGCGGGATCCGCGGCGGCGAGGAAGGGCGAGACGGACGAGTCCGCGTGGCAGCACGGGG 420
consensus_4541#1      ------------------------------------------------------------
                                                                                  

consensus_4541#0      AGGACGTGCGGCGGCGCGCCGCGGAGAAGGCCGAGGAGGCGCGGCGGCGGAGCGAGCCTC 480
consensus_4541#1      -----GTGCGGCGGCGCGCCGGGNAGAAGGCCGAGNAGGCGNGGCGGCGGA-CAAGCNTC 54
                           **************** * *********** ***** ********* * *** **

consensus_4541#0      AGCCGTCGTCGGAGGAGAAGGGGAGGTCGGCGACGGAGAACATCTACGGGTCGGCGGCGA 540
consensus_4541#1      ACCCGTCTTCGGAGGANAAGGGGAGGTCGGCNACGGANAACATCTACGGTTCGGCGGCGA 114
                      * ***** ******** ************** ***** *********** **********

consensus_4541#0      GCGCGGCGGAGGCGTTCAGGCAGAAGATGACGATGCCGGAGGACGTGGTGGAGCAGAAGC 600
consensus_4541#1      GCCCGGCGGAGGCNTTCAGGCAGAANATNACGATGCCGGAGGACGTGGTGGAGCAGAAGC 174
                      ** ********** *********** ** *******************************

consensus_4541#0      GCGCCGAGGCTGCCGCCGGCGGGAACAAGGGAACAGCCGCCGCGACGGCGACGGCGACGA 660
consensus_4541#1      NCGCCGAGGCTNCCGCCGGCGGGAACAAGGGAACANCCGCCGCAACGG-AACGGCAACGA 233
                       ********** *********************** ******* ****  ***** ****

consensus_4541#0      ACACCGGCGGGGAGGCGGCGGCGGAGGAGGTGATGATGCGGGTGAAGGCGGCGGACCAGA 720
consensus_4541#1      ACACCGGCGGGNAGGCGGCGGCGGAGGAGGTGATGATNCGGGTAAAGGCNGCGGACCAAA 293
                      *********** ************************* ***** ***** ******** *

consensus_4541#0      TGACGGGGCAGGCGTTCAACGACGTGGGCAAGATGGGGGAGGAGGGCACCGGCATGGCGG 780
consensus_4541#1      TNACGGGGCAA------------------------------------------------- 304
                      * ********                                                  

consensus_4541#0      CCGGAGATGGTGGGCGCCGCCGCTGAGATCGCCGGAGCCGACCGCGCGGCGCCACGCCAC 840
consensus_4541#1      ------------------------------------------------------------
                                                                                  

consensus_4541#0      GGTGTTTTTGCTCGTCGCGTTTTGTACTAATCTCAGTATAATCTGTAATGTAAATATGTA 900
consensus_4541#1      ------------------------------------------------------------
                                                                                  

consensus_4541#0      ATGCGGCAGTTAAAAGTAATAAAATATCCCCTAAAAAAAAA 941
consensus_4541#1      -----------------------------------------