cluster # 4542

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Oryza sativa
cluster # 4542 cluster # 4542 Sequences # 3 consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4542#0 length = 621 sequences # 3

consensusID : consensus_4542#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 621
fasta sequence

                              [TTGCGCGCATTCGGAGCGCAGGAACCGTAGGGGAATGTATATCTTGTACAAGGATGTTCAGTCCTGCCAGGATGAGGATGTTCATGTCCTGTGGTCGATCCTCATCGACTCGCACCGTCATCCGGCTCTCATGAAGCTGAAGCTCTGAAGTTTGAGGCCATGGCATGAGCAGCAAAACTTCAGAACTACTTTGTGTAGAGACT-AAGGNAA-GGTTTTCCTGAGAAGTCA-TTCTAGGGTGTGGTTTTTGGCTTTGATGATGATGATCCTCATTGGCCATTGTCCTTGCATT-CATGCACTCC-AAAAAAGAAATGAGAGAAAAAAAATATCGAGGTTTGTTTATCTTCTTTCTCGGTGTCCGATTCGCATCCTGTATTAGTGAATGTGAAATTCGGTCGTGTGCATCCTTAGTTGGTGCGGAGGCTAGGAGTTTCGCTTCCATCGTCGAAAAAAAAAGAAAAAAAAACACCCAGTGTGGGTGAAATGTTGTTACCTGTGAGTGTCATGTGTTGAGGTTGATAAAGAGTGTGAGGCTGAGCTCATTTGTACATACATACATACTTGAATACTTGCTCAAATGCCTTACCCTTGATTGTGGTATTGGAGATAGGTTGGTAGAGTGTA]

[+] EMBL AU174551             [TTGCGCGCATTCGGAGCGCAGGAACCGTAGGGGAATGTATATCTTGTACAAGGATGTTCAGTCCTGCCAGGATGAGGATGTTCATGTCCTGTGGTCGATCCTCATCGACTCGCACCGTCATCCGGCTCTCATGAAGCTGAAGCTCTGAAGTTTGAGGCCATGGCATGAGCAGCAAAACTTCAGAACTACTTTGTGTAGAGACT AAGGGAAGGGTTTTCCTGAGAAGTCA TTCTAGGGTGTGGTTTTTGGCTTTGATGATGATGATCCTCATTGGCCATTGTCCTTGCATT CATGCACTCC AAAAAAGAAATGAGAGAAAAAAAATATCGAGGTTTGTTTATCTTCTTTCTCGGTGTCCGATTCGCATCCTGTATTAGTGAATGTGAAATTCGGTCGTGTGCATCCTTAGTTGGTGCGGAGGCTAGGAGTTTCGCTTCCATCGTCGAAAAAAAAAGA                                                                                                                                                                      ]
[-] EMBL CF325557             [TTGCGCGCATTCGGAGCGCAGGAACCGTAGGGGAATGTATATCTTGTACAAGGATGTTCAGTCCTGCCAGGATGAGGATGTTCATGTCCTGTGGTCGATCCTCATCGACTCGCACCGTCATCCGGCTCTCATGAAGCTGAAGCTCTGAAGTTTGAGGCCATGGCATGAGCAGCAAAACTTCAGAAATACTTTGTGTAGAGAATNCAGGNCA GGTTTTCCTGAGAAGTCA TTCTAGGGTGTGGTTTTTGGCTTTGATGATGATGATCCTCATTGGCCATTGTCCTTGCATT CA                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AU174550             [                                                                                                                                                                                       gnccnCTTTGTG AAAG CT AAGGNAA GGNTNNCCTGAGAAG CANTCCTAGGGTGTGGTTTTTGCCTTTGATGATGATGACCCTCATTGGCCATTGCCCTTGCATTNCATGCACTCCAAAAAAAGAAATGAGAGAAAAAAAATATCGAGGTTTGTTTATCTNCTTTCTCGGTGTCCGATTCGCATCCTGTATTAGTGAATGTGAAANTCGGTCGTGTGCATCCTTAGTTGGTGCGGAGGCTAGGAGTTTCGCTTCCATCGTCGAAAAAAAAAGAAAAAAAAACACCCAGTGTGGGTGAAATGTTGTTACCTGTGAGTGTCATGTGTTGAGGTTGATAAAGAGTGTGAGGCTGAGCTCATTTGTACATACATACATACTTGAATACTTGCTCAAATGCCTTACCCTTGATTGTGGTATTGGAGATAGGTTGGTAGAGTGTA]




>consensus_4542#0
TTGCGCGCATTCGGAGCGCAGGAACCGTAGGGGAATGTATATCTTGTACAAGGATGTTCA
GTCCTGCCAGGATGAGGATGTTCATGTCCTGTGGTCGATCCTCATCGACTCGCACCGTCA
TCCGGCTCTCATGAAGCTGAAGCTCTGAAGTTTGAGGCCATGGCATGAGCAGCAAAACTT
CAGAACTACTTTGTGTAGAGACTAAGGNAAGGTTTTCCTGAGAAGTCATTCTAGGGTGTG
GTTTTTGGCTTTGATGATGATGATCCTCATTGGCCATTGTCCTTGCATTCATGCACTCCA
AAAAAGAAATGAGAGAAAAAAAATATCGAGGTTTGTTTATCTTCTTTCTCGGTGTCCGAT
TCGCATCCTGTATTAGTGAATGTGAAATTCGGTCGTGTGCATCCTTAGTTGGTGCGGAGG
CTAGGAGTTTCGCTTCCATCGTCGAAAAAAAAAGAAAAAAAAACACCCAGTGTGGGTGAA
ATGTTGTTACCTGTGAGTGTCATGTGTTGAGGTTGATAAAGAGTGTGAGGCTGAGCTCAT
TTGTACATACATACATACTTGAATACTTGCTCAAATGCCTTACCCTTGATTGTGGTATTG
GAGATAGGTTGGTAGAGTGTA

clustalw multiple alignements is not computed in this case