|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4543#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1415 fasta sequence
[ACACCGAGCCGGCCGCCGCCGCCGCCGCGGAGCGCACGGCGTTCCGGCGAGCCGAGAAGCAGTACAAGCTCTACAAGCCGCTGAAGCCCAAGGGCGGGAGGGCAAGGAGCAAGCCAGGAGGCGGCGGCGGCGGCGGAGGATTGGAGGACCTGTCCGCGGTGGTCGACTTCCACGCGCTGCTCGCTGCCGCCGGCGGCGGCGGGGGGGAGCTGCCCGCCGGGATCGGGAGGCGCGACGTCGCCGGGTTCGACCTCTTCTGCTTCTTGGACCGACCTGGATTCTATTTCATACCTGGTGCTCTATCTATTGAGGAACAATGCTATTGGATCAGGGAAAGCTTGAAAACCTTCCCACAGCCTCCTAATAGAACTAACCTGACAGCTTTGTATGGTCCAATTTTTGACTTACTCACTGCTGCCAAAAGTGGAAAGATTTTAGTCGAAGTGGGAAATCCCAATGACCAAGAAAGATCCGAGCAGAACAGTGATGGAAGAAAATCCAATAGCTTCAAATTTCTTGAAGACACAGAGATACACAAGGGGGAGGTATGCAGGTCAACTGCAGCAACTACCCTTGTTCGGAAACTCCAATGGAGTACCCTTGGTCTGCAATTTGATTGGTCAAAACGCAACTATGATGTATCACTTCCACATAACAAGATTCCAGACCTCCTATCTGCTCTTGCAAAAAAGATGGCCATTCCAGCCATGCCATCTGGAGAGGAATTCAAGCCAGAGGCCGCCATAGTGAACTATTATGGCCCAAGTGACATGCTTGGTGGCCACGTTGATGACATGGAAGCAGATTGGAGTAAACCTATTGTAAGCATAAGTTTGGGGTGCAAGTGCATTTTTCTTCTTGGAGGCAAAACGAGAGATGAAGTTCCAACAGCAATGTTTCTGCGAAGTGGTGATATCGTATTGATGGCTGGGGAGGCACGGGAATGCTTCCATGGTAATGCATTTTACTGAACTAAAGTTGTTTTTAGTGGTAATGCTAATTCAAACACCATATTTATCATGTTCCTATTTTTATCTTTCCCGTCCTCTTATCGCAGGTGTTCCACGAATCTTCACAGGAAGTGATCAGGCAGAAATCTCTGCGCTGGTTCCGCAGCTATCTGCTGAAGATGACTCTTTTATCTTAAACTACATTCAAAATTCAAGGATAAATATCAACATCAGACAAGTCTACTGATCAGTCAATTCTTTTGTTACAGTTAAGAGAATGTGTTGTAAAATGCTGCCTTTCTGCTGCCTCCCCAGATCAACTCACATAGTGCGATAGTCTGATTGATTGCCTCTGGAGTTGGAGTAGACCGGTTGTGGAAAGATAGGAAAGTTTTGGATCCATTTTACAGTTTAATCCCTTATGTCCAAACTAACCATGAAAAAGATTCTTTGACCATCAAAAGG]
[+] EMBL AK103909 [ACACCGAGCCGGCCGCCGCCGCCGCCGCGGAGCGCACGGCGTTCCGGCGAGCCGAGAAGCAGTACAAGCTCTACAAGCCGCTGAAGCCCAAGGGCGGGAGGGCAAGGAGCAAGCCAGGAGGCGGCGGCGGCGGCGGAGGATTGGAGGACCTGTCCGCGGTGGTCGACTTCCACGCGCTGCTCGCTGCCGCCGGCGGCGGCGGGGGGGAGCTGCCCGCCGGGATCGGGAGGCGCGACGTCGCCGGGTTCGACCTCTTCTGCTTCTTGGACCGACCTGGATTCTATTTCATACCTGGTGCTCTATCTATTGAGGAACAATGCTATTGGATCAGGGAAAGCTTGAAAACCTTCCCACAGCCTCCTAATAGAACTAACCTGACAGCTTTGTATGGTCCAATTTTTGACTTACTCACTGCTGCCAAAAGTGGAAAGATTTTAGTCGAAGTGGGAAATCCCAATGACCAAGAAAGATCCGAGCAGAACAGTGATGGAAGAAAATCCAATAGCTTCAAATTTCTTGAAGACACAGAGATACACAAGGGGGAGGTATGCAGGTCAACTGCAGCAACTACCCTTGTTCGGAAACTCCAATGGAGTACCCTTGGTCTGCAATTTGATTGGTCAAAACGCAACTATGATGTATCACTTCCACATAACAAGATTCCAGACCTCCTATCTGCTCTTGCAAAAAAGATGGCCATTCCAGCCATGCCATCTGGAGAGGAATTCAAGCCAGAGGCCGCCATAGTGAACTATTATGGCCCAAGTGACATGCTTGGTGGCCACGTTGATGACATGGAAGCAGATTGGAGTAAACCTATTGTAAGCATAAGTTTGGGGTGCAAGTGCATTTTTCTTCTTGGAGGCAAAACGAGAGATGAAGTTCCAACAGCAATGTTTCTGCGAAGTGGTGATATCGTATTGATGGCTGGGGAGGCACGGGAATGCTTCCATGGTAATGCATTTTACTGAACTAAAGTTGTTTTTAGTGGTAATGCTAATTCAAACACCATATTTATCATGTTCCTATTTTTATCTTTCCCGTCCTCTTATCGCAGGTGTTCCACGAATCTTCACAGGAAGTGATCAGGCAGAAATCTCTGCGCTGGTTCCGCAGCTATCTGCTGAAGATGACTCTTTTATCTTAAACTACATTCAAAATTCAAGGATAAATATCAACATCAGACAAGTCTACTGATCAGTCAATTCTTTTGTTACAGTTAAGAGAATGTGTTGTAAAATGCTGCCTTTCTGCTGCCTCCCCAGATCAACTCACATAGTGCGATAGTCTGATTGATTGCCTCTGGAGTTGGAGTAGACCGGTTGTGGAAAGATAGGAAAGTTTTGGATCCATTTTACAGTTTAATCCCTTATGTCCAAACTAACCATGAAAAAGATTCTTTGACCATCAAAAGG]
consensusID : consensus_4543#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 856 fasta sequence
[CAGGTCAACTGCAGCAACTACCCTTGTTCGGAAACTCCGATGGAGTACCCTTGGTCTGCAATTTGATTGGTCAAAACGCAACTATGATGTATCACTTCCACATAACAAGATTCCAGACCTCCTATCTGCTCTTGCAAAAAAGATGGCCATTCCAGCCATGCCATCTGGAGAGGAATTCAAGCCAGAGGCCGCCATAGTGAACTATTATGGCCCAAGTGACATGCTTGGTGGCCACGTTGATGACATGGAAGCAGATTGGAGTAAACCTATTGTAAGCATAAGTTTGGGGCGCAAGTGCATTTTTCTTCTTGGAGGCAAAACGAGAGATGAAGTTCCAACAGCAATGTTTCTGCGAAGTGGTGATATCGTATTGATGGCTGGGGAGGCACGGGAATGCTTCCATGGTGTTCCACGAATCTTCACAGGAAGTGGTCAGGCAGAAATCTCTGCGCTGGTTCCGCAGCTATCTGCTGAAGATGACTCTTTTATCTTAAACTACATTCAAAATTCAAGGATAAATATCAACATCAGACAAGTCTACTGATCAGTCAATTCTTTTGTTACAGTTAAGAGAATGTGTTGTAAAATGCTGCCTTTCTGCTGCCTNCCCAGATCAACTCACATAGTGCGATAGTCTGATTGATTGCCTCTGGAGTTGGAGTAGACCGGTTGTGGAAAGATAGGAAAGNTTTGGATCCATTTTACAGGTTAATNCCCTTATGTCCAAACTAACCATGAAAAAGATTCTTTGACCATCAAAAAGGGTCTCTTAGGACAAGNTGGTTGGTTTGATCACTGATTACCCTGGAGCAGGCTTTACTAATGGATGGCCATGGGACCTGTCTCACTNCAGCTT]
[+] EMBL CA764490 [CAGGTCAACTGCAGCAACTACCCTTGTTCGGAAACTCCGATGGAGTACCCTTGGTCTGCAATTTGATTGGTCAAAACGCAACTATGATGTATCACTTCCACATAACAAGATTCCAGACCTCCTATCTGCTCTTGCAAAAAAGATGGCCATTCCAGCCATGCCATCTGGAGAGGAATTCAAGCCAGAGGCCGCCATAGTGAACTATTATGGCCCAAGTGACATGCTTGGTGGCCACGTTGATGACATGGAAGCAGATTGGAGTAAACCTATTGTAAGCATAAGTTTGGGGCGCAAGTGCATTTTTCTTCTTGGAGGCAAAACGAGAGATGAAGTTCCAACAGCAATGTTTCTGCGAAGTGGTGATATCGTATTGATGGCTGGGGAGGCACGGGAATGCTTCCATGGTGTTCCACGAATCTTCACAGGAAGTGGTCAGGCAGAAATCTCTGCGCTGGTTCCGCAGCTATCTGCTGAAGATGACTCTTTTATCTTAAACTACATTCAAAATTCAAGGATAAATATCAACATCAGACAAGTCTACTGATCAGTCAATTCTTTTGTTACAGTTAAGAGAATGTGTTGTAAAATGCTGCCTTTCTGCTGCCTNCCCAGATCAACTCACATAGTGCGATAGTCTGATTGATTGCCTCTGGAGTTGGAGTAGACCGGTTGTGGAAAGATAGGAAAGNTTTGGATCCATTTTACAGGTTAATNCCCTTATGTCCAAACTAACCATGAAAAAGATTCTTTGACCATCAAAAAGGGTCTCTTAGGACAAGNTGGTTGGTTTGATCACTGATTACCCTGGAGCAGGCTTTACTAATGGATGGCCATGGGACCTGTCTCACTNCAGCTT]
[+] EMBL AK062459 [ CAACTATGATGTATCACTTCCACATAACAAGATTCCAGACCTCCTATCTGCTCTTGCAAAAAAGATGGCCATTCCAGCCATGCCATCTGGAGAGGAATTCAAGCCAGAGGCCGCCATAGTGAACTATTATGGCCCAAGTGACATGCTTGGTGGCCACGTTGATGACATGGAAGCAGATTGGAGTAAACCTATTGTAAGCATAAGTTTGGGGTGCAAGTGCATTTTTCTTCTTGGAGGCAAAACGAGAGATGAAGTTCCAACAGCAATGTTTCTGCGAAGTGGTGATATCGTATTGATGGCTGGGGAGGCACGGGAATGCTTCCATGGTGTTCCACGAATCTTCACAGGAAGTGATCAGGCAGAAATCTCTGCGCTGGTTCCGCAGCTATCTGCTGAAGATGACTCTTTTATCTTAAACTACATTCAAAATTCAAGGATAAATATCAACATCAGACAAGTCTACTGATCAGTCAATTCTTTTGTTACAGTTAAGAGAATGTGTTGTAAAATGCTGCCTTTCTGCTGCCTCCCCAGATCAACTCACATAGTGCGATAGTCTGATTGATTGCCTCTGGAGTTGGAGTAGACCGGTTGTGGAAAGATAGGAAAGTTTTGGATCCATTTTACAGTTTAAT CCCTTATGTCCAAACTAACCATGAAAAAGATTCTTTGACCATCAAAAgg ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4543#0 ACACCGAGCCGGCCGCCGCCGCCGCCGCGGAGCGCACGGCGTTCCGGCGAGCCGAGAAGC 60
consensus_4543#1 ------------------------------------------------------------
consensus_4543#0 AGTACAAGCTCTACAAGCCGCTGAAGCCCAAGGGCGGGAGGGCAAGGAGCAAGCCAGGAG 120
consensus_4543#1 ------------------------------------------------------------
consensus_4543#0 GCGGCGGCGGCGGCGGAGGATTGGAGGACCTGTCCGCGGTGGTCGACTTCCACGCGCTGC 180
consensus_4543#1 ------------------------------------------------------------
consensus_4543#0 TCGCTGCCGCCGGCGGCGGCGGGGGGGAGCTGCCCGCCGGGATCGGGAGGCGCGACGTCG 240
consensus_4543#1 ------------------------------------------------------------
consensus_4543#0 CCGGGTTCGACCTCTTCTGCTTCTTGGACCGACCTGGATTCTATTTCATACCTGGTGCTC 300
consensus_4543#1 ------------------------------------------------------------
consensus_4543#0 TATCTATTGAGGAACAATGCTATTGGATCAGGGAAAGCTTGAAAACCTTCCCACAGCCTC 360
consensus_4543#1 ------------------------------------------------------------
consensus_4543#0 CTAATAGAACTAACCTGACAGCTTTGTATGGTCCAATTTTTGACTTACTCACTGCTGCCA 420
consensus_4543#1 ------------------------------------------------------------
consensus_4543#0 AAAGTGGAAAGATTTTAGTCGAAGTGGGAAATCCCAATGACCAAGAAAGATCCGAGCAGA 480
consensus_4543#1 ------------------------------------------------------------
consensus_4543#0 ACAGTGATGGAAGAAAATCCAATAGCTTCAAATTTCTTGAAGACACAGAGATACACAAGG 540
consensus_4543#1 ------------------------------------------------------------
consensus_4543#0 GGGAGGTATGCAGGTCAACTGCAGCAACTACCCTTGTTCGGAAACTCCAATGGAGTACCC 600
consensus_4543#1 ----------CAGGTCAACTGCAGCAACTACCCTTGTTCGGAAACTCCGATGGAGTACCC 50
************************************** ***********
consensus_4543#0 TTGGTCTGCAATTTGATTGGTCAAAACGCAACTATGATGTATCACTTCCACATAACAAGA 660
consensus_4543#1 TTGGTCTGCAATTTGATTGGTCAAAACGCAACTATGATGTATCACTTCCACATAACAAGA 110
************************************************************
consensus_4543#0 TTCCAGACCTCCTATCTGCTCTTGCAAAAAAGATGGCCATTCCAGCCATGCCATCTGGAG 720
consensus_4543#1 TTCCAGACCTCCTATCTGCTCTTGCAAAAAAGATGGCCATTCCAGCCATGCCATCTGGAG 170
************************************************************
consensus_4543#0 AGGAATTCAAGCCAGAGGCCGCCATAGTGAACTATTATGGCCCAAGTGACATGCTTGGTG 780
consensus_4543#1 AGGAATTCAAGCCAGAGGCCGCCATAGTGAACTATTATGGCCCAAGTGACATGCTTGGTG 230
************************************************************
consensus_4543#0 GCCACGTTGATGACATGGAAGCAGATTGGAGTAAACCTATTGTAAGCATAAGTTTGGGGT 840
consensus_4543#1 GCCACGTTGATGACATGGAAGCAGATTGGAGTAAACCTATTGTAAGCATAAGTTTGGGGC 290
***********************************************************
consensus_4543#0 GCAAGTGCATTTTTCTTCTTGGAGGCAAAACGAGAGATGAAGTTCCAACAGCAATGTTTC 900
consensus_4543#1 GCAAGTGCATTTTTCTTCTTGGAGGCAAAACGAGAGATGAAGTTCCAACAGCAATGTTTC 350
************************************************************
consensus_4543#0 TGCGAAGTGGTGATATCGTATTGATGGCTGGGGAGGCACGGGAATGCTTCCATGGTAATG 960
consensus_4543#1 TGCGAAGTGGTGATATCGTATTGATGGCTGGGGAGGCACGGGAATGCTTCCATGGT---- 406
********************************************************
consensus_4543#0 CATTTTACTGAACTAAAGTTGTTTTTAGTGGTAATGCTAATTCAAACACCATATTTATCA 1020
consensus_4543#1 ------------------------------------------------------------
consensus_4543#0 TGTTCCTATTTTTATCTTTCCCGTCCTCTTATCGCAGGTGTTCCACGAATCTTCACAGGA 1080
consensus_4543#1 ---------------------------------------GTTCCACGAATCTTCACAGGA 427
*********************
consensus_4543#0 AGTGATCAGGCAGAAATCTCTGCGCTGGTTCCGCAGCTATCTGCTGAAGATGACTCTTTT 1140
consensus_4543#1 AGTGGTCAGGCAGAAATCTCTGCGCTGGTTCCGCAGCTATCTGCTGAAGATGACTCTTTT 487
**** *******************************************************
consensus_4543#0 ATCTTAAACTACATTCAAAATTCAAGGATAAATATCAACATCAGACAAGTCTACTGATCA 1200
consensus_4543#1 ATCTTAAACTACATTCAAAATTCAAGGATAAATATCAACATCAGACAAGTCTACTGATCA 547
************************************************************
consensus_4543#0 GTCAATTCTTTTGTTACAGTTAAGAGAATGTGTTGTAAAATGCTGCCTTTCTGCTGCCTC 1260
consensus_4543#1 GTCAATTCTTTTGTTACAGTTAAGAGAATGTGTTGTAAAATGCTGCCTTTCTGCTGCCTN 607
***********************************************************
consensus_4543#0 CCCAGATCAACTCACATAGTGCGATAGTCTGATTGATTGCCTCTGGAGTTGGAGTAGACC 1320
consensus_4543#1 CCCAGATCAACTCACATAGTGCGATAGTCTGATTGATTGCCTCTGGAGTTGGAGTAGACC 667
************************************************************
consensus_4543#0 GGTTGTGGAAAGATAGGAAAGTTTTGGATCCATTTTACAGTTTAATCCC-TTATGTCCAA 1379
consensus_4543#1 GGTTGTGGAAAGATAGGAAAGNTTTGGATCCATTTTACAGGTTAATNCCCTTATGTCCAA 727
********************* ****************** ***** ** **********
consensus_4543#0 ACTAACCATGAAAAAGATTCTTTGACCATCAAAAGG------------------------ 1415
consensus_4543#1 ACTAACCATGAAAAAGATTCTTTGACCATCAAAAAGGGTCTCTTAGGACAAGNTGGTTGG 787
********************************** *
consensus_4543#0 ------------------------------------------------------------
consensus_4543#1 TTTGATCACTGATTACCCTGGAGCAGGCTTTACTAATGGATGGCCATGGGACCTGTCTCA 847
consensus_4543#0 ---------
consensus_4543#1 CTNCAGCTT 856
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||