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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4546#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1526 fasta sequence
[GTTAATGGAGGAGGCATTGGAGTAGTTGAGCTCGATCGATGAGGAAGAAGACTAGAAGAGGAGGAGGGACGGCGGTGGTGAGTGACAAGCGCCAACCGCGATTAATGGCGACGAGGACGTGCGCCGTAATGGCGGCAGTGACCGATCGGAGAGGCTCCAGGTTCTTGGCGGTTGAGGCTGGAGGCGTCGAGGCCAGCCGCGTCATCCACCCCCTTTAAATGCTTCCCGCCCCTTCGTTCTGCTCAATCACTCGCATCCATCCATCCATCGATCGATCGATCGGCGATGGTCGCCGCCGAGGAGAACCCGGAGTCCTTCTTCGCGGCGGCGCCGCCGCTGCGGGACGCCGACGCCGTGGCCGCGAGGCTGGGGGAATTCATCGCCCGCAACTCCTCCGCAGCGGGCGCGGGCGGCGGCGGCAGGCGGATCGTGTGCGTGACGTCGGGCGGGACGACGGTGCCGCTGGAGCAGCGCTGCGTGCGGTACATCGACAACTTCAGCTCCGGCCACCGCGGCGCCGCCTCCACCGAGTATTTTTTGAAGGCTGGCTATGCAGTTATCTTCCTCCATCGACGAGGAAGCTGCCAGCCTTATTGTAGGTTCCTCCCCGATGATTCATTCCTCAAATTCTTTGATGTCGATGCAGAATCGAAGGTTCAAGTGGCGGAGTGCCACGCGCCAGTGGTCAAGAAAGCAATTGGAGATTATTGCAAGGCAATTGAAGGCGGCTATCTGTTGAAACTCCCATTCACTACAATATTTGAATACCTTCAGCTATTGAAGATGGTTGCTACATCTATAAGTTCGGCTGGGCCACTCGGAATGTTCTATCTTGCTGCGGCTGTGTCTGATTTCTATGTCCCTTGGGATAGCATGGCCAAACATAAGATTCAGTCAGGTGGAGGCCCTCTGGATATGAGGCTCAGTCAAGTTCCGAAAATGCTTTCAGTGTTGCGAAACCAATGGGCCCCCTTGGCGTTCTGTATATCATTTAAGTTGGAGACGGATTCGGACATCCTTATTCAGAAAGCAGATATGGCTCTGAACAAGTACAAGATGAACATCGTTGTGGCCAATTTGCTTGCAACGTACAAAGAGGAAGTCATTATTGTAACAGACAAAGAAAGGAGTACTATCCGAAAGATGAACAAGGATGAGGATCTGGAAATGCAGATAATCAAAATCCTATCACAGAATCACTCGAAGTACATATGCGGAAGCACAAACGGGTGCGTCCAGAGCCCATATTGAATTGCGGGAATCTGTACTGTACCGTTTCACATTAGAGGTTTTACTTAAATTACTCTACTAAAGAGTTTGATTTGCTTTCTGGGCGTTGAAATGAAAAGAAAGCCCAACTGAATCTGGAATGAGAATTCAGTATACGGTGTAATCCGTGATGATGCCGATAGGTACACAAACAGCATCACTTTTTTTTCTCTCTTTCAGAATTACAAAAAAGAGAGTGAAGTTAACAGCGACAGCCCCAAATATAAATGGCTTATTTTATTTTAATCAAAATTAAT]
[+] EMBL AK069567 [GTTAATGGAGGAGGCATTGGAGTAGTTGAGCTCGATCGATGAGGAAGAAGACTAGAAGAGGAGGAGGGACGGCGGTGGTGAGTGACAAGCGCCAACCGCGATTAATGGCGACGAGGACGTGCGCCGTAATGGCGGCAGTGACCGATCGGAGAGGCTCCAGGTTCTTGGCGGTTGAGGCTGGAGGCGTCGAGGCCAGCCGCGTCATCCACCCCCTTTAAATGCTTCCCGCCCCTTCGTTCTGCTCAATCACTCGCATCCATCCATCCATCGATCGATCGATCGGCGATGGTCGCCGCCGAGGAGAACCCGGAGTCCTTCTTCGCGGCGGCGCCGCCGCTGCGGGACGCCGACGCCGTGGCCGCGAGGCTGGGGGAATTCATCGCCCGCAACTCCTCCGCAGCGGGCGCGGGCGGCGGCGGCAGGCGGATCGTGTGCGTGACGTCGGGCGGGACGACGGTGCCGCTGGAGCAGCGCTGCGTGCGGTACATCGACAACTTCAGCTCCGGCCACCGCGGCGCCGCCTCCACCGAGTATTTTTTGAAGGCTGGCTATGCAGTTATCTTCCTCCATCGACGAGGAAGCTGCCAGCCTTATTGTAGGTTCCTCCCCGATGATTCATTCCTCAAATTCTTTGATGTCGATGCAGAATCGAAGGTTCAAGTGGCGGAGTGCCACGCGCCAGTGGTCAAGAAAGCAATTGGAGATTATTGCAAGGCAATTGAAGGCGGCTATCTGTTGAAACTCCCATTCACTACAATATTTGAATACCTTCAGCTATTGAAGATGGTTGCTACATCTATAAGTTCGGCTGGGCCACTCGGAATGTTCTATCTTGCTGCGGCTGTGTCTGATTTCTATGTCCCTTGGGATAGCATGGCCAAACATAAGATTCAGTCAGGTGGAGGCCCTCTGGATATGAGGCTCAGTCAAGTTCCGAAAATGCTTTCAGTGTTGCGAAACCAATGGGCCCCCTTGGCGTTCTGTATATCATTTAAGTTGGAGACGGATTCGGACATCCTTATTCAGAAAGCAGATATGGCTCTGAACAAGTACAAGATGAACATCGTTGTGGCCAATTTGCTTGCAACGTACAAAGAGGAAGTCATTATTGTAACAGACAAAGAAAGGAGTACTATCCGAAAGATGAACAAGGATGAGGATCTGGAAATGCAGATAATCAAAATCCTATCACAGAATCACTCGAAGTACATATGCGGAAGCACAAACGGGTGCGTCCAGAGCCCATATTGAATTGCGGGAATCTGTACTGTACCGTTTCACATTAGAGGTTTTACTTAAATTACTCTACTAAAGAGTTTGATTTGCTTTCTGGGCGTTGAAATGAAAAGAAAGCCCAACTGAATCTGGAATGAGAATTCAGTATACGGTGTAATCCGTGATGATGCCGATAGGTACACAAACAGCATCACTTTTTTTTCTCTCTTTCAGAATTACAAAAAAGAGAGTGAAGTTAACAGCGACAGCCCCAAATATAAATGGCTTATTTTATTTTAATCAAAATTAAT]
[+] EMBL CA764506 [ aaggggCAGGTGGAGGCCCTCTGGATATGAGGCTCAGTCAAGTTCCGAAAATGCTTTCAGTGTTGCGAAACCAATGGGCCCCCTTGGCGTTCTGTATATCATTTAAGTCGGAGACGGATTCGGACATCCTTATTCAGAAAGCAGATATGGCTCTGAACAAGTACAAGATGAACATCGTTGTGGCCAATTTGCTTGCAACGTACAAAGAGGAAGTCATTATTGTAACAGACAAAGAAAGGAGTACTATCCGAAAGATGAACAAGGATGAGGATCTGGAAATGCAGATAATCAAAATCCTATCACACAATCACTCGAAGTACATATGCGGAAGCACAAACGGGTGCGTCCAGAGCCCATATTGAATTGCGGGAATCTGTACTGTACCGTTTCACATTAGAGGTTTTACTTAAATTACTCTACTAAAGAGTTTGATTTGCTTTCTGGGCGTTGAAATGAAAAGAAAGCCCGACTGAATCTGGAATGAGAATTCAGTATACGGTGTAATCCGTGATGATGCTGATAGGTACACAAACAGCATCACTTTTTTTTCTCTCTTTCAGAATTACAAAAAAGAGAGTGAAGTTAACA ]
consensusID : consensus_4546#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 238 fasta sequence
[ATCGTGTGCGTGACTTCGGGCGGGACGACGGTGCCGCTGGAGCAGCGCTGCGTGCGGTACATCGACAACTTCAGCTCCGGCCACCGCGGCGCCGCCTCCACCGAGTATTTTTTGAAGGCTGGCTATGCAGTTATCTTCCTCCATCGACNNNGAAGCTGCCNNCCTTATTGTAGNTTCCTCCCCGATGATTCATTCCTNGNATTCTTTGATNNNNNTGCNNNATCNNNNNNTNNNGNNN]
[+] EMBL CF196702 [ATCGTGTGCGTGACTTCGGGCGGGACGACGGTGCCGCTGGAGCAGCGCTGCGTGCGGTACATCGACAACTTCAGCTCCGGCCACCGCGGCGCCGCCTCCACCGAGTATTTTTTGAAGGCTGGCTATGCAGTTATCTTCCTCCATCGACNNNGAAGCTGCCNNCCTTATTGTAGNTTCCTCCCCGATGATTCATTCCTNGNATTCTTTGATNNNNNTGCNNNATCNNNNNNTNNNGNNN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4546#0 GTTAATGGAGGAGGCATTGGAGTAGTTGAGCTCGATCGATGAGGAAGAAGACTAGAAGAG 60
consensus_4546#1 ------------------------------------------------------------
consensus_4546#0 GAGGAGGGACGGCGGTGGTGAGTGACAAGCGCCAACCGCGATTAATGGCGACGAGGACGT 120
consensus_4546#1 ------------------------------------------------------------
consensus_4546#0 GCGCCGTAATGGCGGCAGTGACCGATCGGAGAGGCTCCAGGTTCTTGGCGGTTGAGGCTG 180
consensus_4546#1 ------------------------------------------------------------
consensus_4546#0 GAGGCGTCGAGGCCAGCCGCGTCATCCACCCCCTTTAAATGCTTCCCGCCCCTTCGTTCT 240
consensus_4546#1 ------------------------------------------------------------
consensus_4546#0 GCTCAATCACTCGCATCCATCCATCCATCGATCGATCGATCGGCGATGGTCGCCGCCGAG 300
consensus_4546#1 ------------------------------------------------------------
consensus_4546#0 GAGAACCCGGAGTCCTTCTTCGCGGCGGCGCCGCCGCTGCGGGACGCCGACGCCGTGGCC 360
consensus_4546#1 ------------------------------------------------------------
consensus_4546#0 GCGAGGCTGGGGGAATTCATCGCCCGCAACTCCTCCGCAGCGGGCGCGGGCGGCGGCGGC 420
consensus_4546#1 ------------------------------------------------------------
consensus_4546#0 AGGCGGATCGTGTGCGTGACGTCGGGCGGGACGACGGTGCCGCTGGAGCAGCGCTGCGTG 480
consensus_4546#1 ------ATCGTGTGCGTGACTTCGGGCGGGACGACGGTGCCGCTGGAGCAGCGCTGCGTG 54
************** ***************************************
consensus_4546#0 CGGTACATCGACAACTTCAGCTCCGGCCACCGCGGCGCCGCCTCCACCGAGTATTTTTTG 540
consensus_4546#1 CGGTACATCGACAACTTCAGCTCCGGCCACCGCGGCGCCGCCTCCACCGAGTATTTTTTG 114
************************************************************
consensus_4546#0 AAGGCTGGCTATGCAGTTATCTTCCTCCATCGACGAGGAAGCTGCCAGCCTTATTGTAGG 600
consensus_4546#1 AAGGCTGGCTATGCAGTTATCTTCCTCCATCGACNNNGAAGCTGCCNNCCTTATTGTAGN 174
********************************** ********* ***********
consensus_4546#0 TTCCTCCCCGATGATTCATTCCTCAAATTCTTTGATGTCGATGCAGAATCGAAGGTTCAA 660
consensus_4546#1 TTCCTCCCCGATGATTCATTCCTNGNATTCTTTGATNNNNNTGCNNNATCNNNNNNTNNN 234
*********************** ********** *** *** *
consensus_4546#0 GTGGCGGAGTGCCACGCGCCAGTGGTCAAGAAAGCAATTGGAGATTATTGCAAGGCAATT 720
consensus_4546#1 GNNN-------------------------------------------------------- 238
*
consensus_4546#0 GAAGGCGGCTATCTGTTGAAACTCCCATTCACTACAATATTTGAATACCTTCAGCTATTG 780
consensus_4546#1 ------------------------------------------------------------
consensus_4546#0 AAGATGGTTGCTACATCTATAAGTTCGGCTGGGCCACTCGGAATGTTCTATCTTGCTGCG 840
consensus_4546#1 ------------------------------------------------------------
consensus_4546#0 GCTGTGTCTGATTTCTATGTCCCTTGGGATAGCATGGCCAAACATAAGATTCAGTCAGGT 900
consensus_4546#1 ------------------------------------------------------------
consensus_4546#0 GGAGGCCCTCTGGATATGAGGCTCAGTCAAGTTCCGAAAATGCTTTCAGTGTTGCGAAAC 960
consensus_4546#1 ------------------------------------------------------------
consensus_4546#0 CAATGGGCCCCCTTGGCGTTCTGTATATCATTTAAGTTGGAGACGGATTCGGACATCCTT 1020
consensus_4546#1 ------------------------------------------------------------
consensus_4546#0 ATTCAGAAAGCAGATATGGCTCTGAACAAGTACAAGATGAACATCGTTGTGGCCAATTTG 1080
consensus_4546#1 ------------------------------------------------------------
consensus_4546#0 CTTGCAACGTACAAAGAGGAAGTCATTATTGTAACAGACAAAGAAAGGAGTACTATCCGA 1140
consensus_4546#1 ------------------------------------------------------------
consensus_4546#0 AAGATGAACAAGGATGAGGATCTGGAAATGCAGATAATCAAAATCCTATCACAGAATCAC 1200
consensus_4546#1 ------------------------------------------------------------
consensus_4546#0 TCGAAGTACATATGCGGAAGCACAAACGGGTGCGTCCAGAGCCCATATTGAATTGCGGGA 1260
consensus_4546#1 ------------------------------------------------------------
consensus_4546#0 ATCTGTACTGTACCGTTTCACATTAGAGGTTTTACTTAAATTACTCTACTAAAGAGTTTG 1320
consensus_4546#1 ------------------------------------------------------------
consensus_4546#0 ATTTGCTTTCTGGGCGTTGAAATGAAAAGAAAGCCCAACTGAATCTGGAATGAGAATTCA 1380
consensus_4546#1 ------------------------------------------------------------
consensus_4546#0 GTATACGGTGTAATCCGTGATGATGCCGATAGGTACACAAACAGCATCACTTTTTTTTCT 1440
consensus_4546#1 ------------------------------------------------------------
consensus_4546#0 CTCTTTCAGAATTACAAAAAAGAGAGTGAAGTTAACAGCGACAGCCCCAAATATAAATGG 1500
consensus_4546#1 ------------------------------------------------------------
consensus_4546#0 CTTATTTTATTTTAATCAAAATTAAT 1526
consensus_4546#1 --------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||