These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4548#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 444 fasta sequence [GTCGAATCCCGATCGATAAACCTGGGGTGCCACAGGGTGAAAATTGCTTTTCTTGCTTCTGTGTGTTGGAAATTAAAC-TATGGCTTGCAAGGGAT-TATATATAAGATC-TTTCAGAATAAATTTCTCTTT-AT-AACTCTACTGACATCGATTTTCTGCTTTATTTCTTCTCTTCATCAGTGGAGTCGAGACCTGGTGATCGAGAAGAGACTCGATCTCTTACAAGTATGGATGGACTAGCTTTTGCAAGCTTTGGACACTCTTCGTCCTTCCCAATCCC-ATCGAGCTAAC-TTGTATGATCTATGGTGATCAGCATACCAATAAATACTATCAGC-ATATGTTCCTGGACCATTTTTCGTCCGGTCTTTGCTGGTGTAGTGATGCCTGTGGCTGTTGGAATAAATGTACTTTTAAGAATAATTCCTGTCACGTGGAGGGAGTAAAAAA] [+] EMBL BI813121 [GTCGAATCCCGATCGATAAACCTGGGGTGCCACAGGGTGAAAATTGCTTTTCTTGCTTCTGTGTGTTGGAAATTAAAC TATGGCTTGCAAGGGAT TATATATAAGATC TTTCAGAATAAATTTCTCTTT AT AACTCTACTGACATCGATTTTCTGCTTTATTTCTTCTCTTCATCAGTGGAGTCGAGACCTGGTGATCGAGAAGAGACTCGATCTCTTACAAGTATGGATGGACTAGCTTTTGCAAGCTTTGGACACTCTTCGTCCTTCCCAATCCC ATCGAGCTAAC TTGTATGATCTATGGTGATCAGCATACCAATAAATACTATCAGC ATATGTTCCTGGACCATTTTTCGTCCGGTCTTTGCTGGTGTAGTGATGCCTGTGGCTGTTGGAATAAATGTACTTTTAAGAATAATTCCTGTCACGTGGAGGGAGTAAAAAA] [+] EMBL BI813164 [ tgtTGT TGTTGGAAATTAAACGTATGGCTT CAAGGGATATATATA AAGATCTTTTCAGAATAAATTTCTCTTTGATGAACTCTACTGACATCGATTTTCTGCTTTATTTCTTCTCTTCATCAGTGGAGTCGAGACCTGGTGATCGAGAAGAGACTCGATCTCTTACAAGTATGGATGGACTAGCTTTTGCAAGCTTTGGACACTCTTCGTCCTTCCCAATCCCAATCGAGCTAACATTGTATGATCTATGGTGATCAGCATACCAATAAATACTATCAGCAATATGTTCCTGGACCATTTTTCGTCCGGTCTTTGCTGGTGTAGTGATGCCTGTGGCTGTTGGAATAAATGTACTTTTAAGAATAATTCCTGTCACGTGGAGGGAGTAAAAAA] consensusID : consensus_4548#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence [TGTTGGAAATTGATAACTAGTGGCTTGCCAAGGGATTATATATAAGATCTTTCAGAATAAATTTCTCTTTGATAACTGCTACTGACATGCGATGTTTGCTGCTTTGATTTCTGTCTGCTTCATCAGTGGGAGTCGAGACCTGGGTGATCGAGAAGAGACTCAGATCTCTTGACAAGTATGGATGGACTAGCTTTTGCAAGCTTTGGGACACTGCTTCGTGCCTTGCCCAAATCCCAGATCGAGCTAACATTGTGATGGATGCTATGGGTGGATCAGCATACCAATAAATACTATCAGCATATGTTCCTGGACCATTTTTCGTCCGGTCTTTGCTGGTGTAGTGATGCCTGTGGCTGTTGGAATAAATGTACTTTTAAGAATAATTCCTGTCACGTGGAGGGAGTAAAAAA] [+] EMBL BI813212 [TGTTGGAAATTGATAACTAGTGGCTTGCCAAGGGATTATATATAAGATCTTTCAGAATAAATTTCTCTTTGATAACTGCTACTGACATGCGATGTTTGCTGCTTTGATTTCTGTCTGCTTCATCAGTGGGAGTCGAGACCTGGGTGATCGAGAAGAGACTCAGATCTCTTGACAAGTATGGATGGACTAGCTTTTGCAAGCTTTGGGACACTGCTTCGTGCCTTGCCCAAATCCCAGATCGAGCTAACATTGTGATGGATGCTATGGGTGGATCAGCATACCAATAAATACTATCAGCATATGTTCCTGGACCATTTTTCGTCCGGTCTTTGCTGGTGTAGTGATGCCTGTGGCTGTTGGAATAAATGTACTTTTAAGAATAATTCCTGTCACGTGGAGGGAGTAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4548#0 GTCGAATCCCGATCGATAAACCTGGGGTGCCACAGGGTGAAAATTGCTTTTCTTGCTTCT 60 consensus_4548#1 ------------------------------------------------------------ consensus_4548#0 GTGTGTTGGAAATTAA--ACTA-TGGCTTGC-AAGGGATTATATATAAGATCTTTCAGAA 116 consensus_4548#1 ---TGTTGGAAATTGATAACTAGTGGCTTGCCAAGGGATTATATATAAGATCTTTCAGAA 57 *********** * **** ******** **************************** consensus_4548#0 TAAATTTCTCTTT-ATAACT-CTACTGACAT-CGATTTT--CTGCTTT-ATTTCT-TCT- 168 consensus_4548#1 TAAATTTCTCTTTGATAACTGCTACTGACATGCGATGTTTGCTGCTTTGATTTCTGTCTG 117 ************* ****** ********** **** ** ******* ****** *** consensus_4548#0 CTTCATCAGTGG-AGTCGAGACCTGG-TGATCGAGAAGAGACTC-GATCTCTT-ACAAGT 224 consensus_4548#1 CTTCATCAGTGGGAGTCGAGACCTGGGTGATCGAGAAGAGACTCAGATCTCTTGACAAGT 177 ************ ************* ***************** ******** ****** consensus_4548#0 ATGGATGGACTAGCTTTTGCAAGCTTTGG-ACACT-CTTCGTCCTT---CCCAATCCCA- 278 consensus_4548#1 ATGGATGGACTAGCTTTTGCAAGCTTTGGGACACTGCTTCGTGCCTTGCCCAAATCCCAG 237 ***************************** ***** ****** * * ** ******* consensus_4548#0 -TCGAGCTAAC-TTGT-----ATGATCTATGGTGATCAGCATACCAATAAATACTATCAG 331 consensus_4548#1 ATCGAGCTAACATTGTGATGGATGCTATGGGTGGATCAGCATACCAATAAATACTATCAG 297 ********** **** *** * * * *************************** consensus_4548#0 CATATGTTCCTGGACCATTTTTCGTCCGGTCTTTGCTGGTGTAGTGATGCCTGTGGCTGT 391 consensus_4548#1 CATATGTTCCTGGACCATTTTTCGTCCGGTCTTTGCTGGTGTAGTGATGCCTGTGGCTGT 357 ************************************************************ consensus_4548#0 TGGAATAAATGTACTTTTAAGAATAATTCCTGTCACGTGGAGGGAGTAAAAAA 444 consensus_4548#1 TGGAATAAATGTACTTTTAAGAATAATTCCTGTCACGTGGAGGGAGTAAAAAA 410 ***************************************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||