cluster # 4552

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Oryza sativa
cluster # 4552 cluster # 4552 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4552#0 length = 277 sequences # 1

consensus_4552#1 length = 256 sequences # 2

consensusID : consensus_4552#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 277
fasta sequence

                              [CCCACCTGGTGGTAGCACGTGGCCAGGCCGCGGCCGGTGTACATACATACACACGTGTCATGTGTGCTCGATCGAGTAGGACTCAAACGTGTACGTGTATTCTTTTTTTTTTTTGGTTTTGTTTTTTACTTCTTATTGTTCCTCCCCTTTCTGTGTGGATGCGCATCCATCTCTGCATGCGATGTGAGGAGGCCTAGTTAGATTTACAGACGGAGGATGCTACTAAAGTAATACTATAATTCTTTTTGACTAAAAAAAAAAAAAAAAAAAAAAAANA]

[+] EMBL AU161924             [CCCACCTGGTGGTAGCACGTGGCCAGGCCGCGGCCGGTGTACATACATACACACGTGTCATGTGTGCTCGATCGAGTAGGACTCAAACGTGTACGTGTATTCTTTTTTTTTTTTGGTTTTGTTTTTTACTTCTTATTGTTCCTCCCCTTTCTGTGTGGATGCGCATCCATCTCTGCATGCGATGTGAGGAGGCCTAGTTAGATTTACAGACGGAGGATGCTACTAAAGTAATACTATAATTCTTTTTGACTAAAAAAAAAAAAAAAAAAAAAAAANA]




>consensus_4552#0
CCCACCTGGTGGTAGCACGTGGCCAGGCCGCGGCCGGTGTACATACATACACACGTGTCA
TGTGTGCTCGATCGAGTAGGACTCAAACGTGTACGTGTATTCTTTTTTTTTTTTGGTTTT
GTTTTTTACTTCTTATTGTTCCTCCCCTTTCTGTGTGGATGCGCATCCATCTCTGCATGC
GATGTGAGGAGGCCTAGTTAGATTTACAGACGGAGGATGCTACTAAAGTAATACTATAAT
TCTTTTTGACTAAAAAAAAAAAAAAAAAAAAAAAANA

consensusID : consensus_4552#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 256
fasta sequence

                              [GCCGCGGGCGGCGGCGGGAGGAAGGTGCCCACCTGGTGGTAGCACGTGGCCAGGCCGCGGCCGGTGTACATACATACACACGTGTCATGTGTGCTCGATCGAGTAGGACTCAAACGTGTATGTGTATTCTTTTTTTTTTTTTTACTTCTTCTTGTTCCTCCCCTTTCTCTGTGGATGCGCATCCATCTCTGCATGCGATGTGAGGAGGCCTAGTTAGATTTACAGACGGAGGATGCTACTACTCGAGTAATACTAT]

[+] EMBL CB966216             [GCCGCGGGCGGCGGCGGGAGGAAGGTGCCCACCTGGTGGTAGCACGTGGCCAGGCCGCGGCCGGTGTACATACATACACACGTGTCATGTGTGCTCGATCGAGTAGGACTCAAACGTGTATGTGTATTCTTTTTTTTTTTTTTACTTCTTCTTGTTCCTCCCCTTTCTCTGTGGATGCGCATCCATCTCTGCATGCGATGTGAGGAGGCCTAGTTAGATTTACAGACGGAGGATGCTACTACTCGAGTAATACTAT]
[+] EMBL CB966700             [ CCGCGGGCGGCGGCGGGAGGAAGGTGCCCACCTGGTGGTAGCACGTGGCCAGGCCGCGGCCGGTGTACATACATACACACGTGTCATGTGTGCTCGATCGAGTAGGACTCAAACGTGTATGTGTATTCTTTTTTTTTTTTTTACTTCTTCTTGTTCCTCCCCTTTCTCTGTGGATGCGCATCCATCTCTGCATGCGATGTGAGGAGGCCTAGTTAGATTTACAGACGGAGGATGCTACTACTAGAGTAATACTAT]




>consensus_4552#1
GCCGCGGGCGGCGGCGGGAGGAAGGTGCCCACCTGGTGGTAGCACGTGGCCAGGCCGCGG
CCGGTGTACATACATACACACGTGTCATGTGTGCTCGATCGAGTAGGACTCAAACGTGTA
TGTGTATTCTTTTTTTTTTTTTTACTTCTTCTTGTTCCTCCCCTTTCTCTGTGGATGCGC
ATCCATCTCTGCATGCGATGTGAGGAGGCCTAGTTAGATTTACAGACGGAGGATGCTACT
ACTCGAGTAATACTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4552#0      ---------------------------CCCACCTGGTGGTAGCACGTGGCCAGGCCGCGG 33
consensus_4552#1      GCCGCGGGCGGCGGCGGGAGGAAGGTGCCCACCTGGTGGTAGCACGTGGCCAGGCCGCGG 60
                                                 *********************************

consensus_4552#0      CCGGTGTACATACATACACACGTGTCATGTGTGCTCGATCGAGTAGGACTCAAACGTGTA 93
consensus_4552#1      CCGGTGTACATACATACACACGTGTCATGTGTGCTCGATCGAGTAGGACTCAAACGTGTA 120
                      ************************************************************

consensus_4552#0      CGTGTATTCTTTTTTTTTTTTGGTTTTGTTTTTTACTTCTTATTGTTCCTCCCCTTTCTG 153
consensus_4552#1      TGTGTATTCTTTTTTTTTTTT-----------TTACTTCTTCTTGTTCCTCCCCTTTCTC 169
                       ********************           ********* ***************** 

consensus_4552#0      TGTGGATGCGCATCCATCTCTGCATGCGATGTGAGGAGGCCTAGTTAGATTTACAGACGG 213
consensus_4552#1      TGTGGATGCGCATCCATCTCTGCATGCGATGTGAGGAGGCCTAGTTAGATTTACAGACGG 229
                      ************************************************************

consensus_4552#0      AGGATGCTACTA---AAGTAATACTATAATTCTTTTTGACTAAAAAAAAAAAAAAAAAAA 270
consensus_4552#1      AGGATGCTACTACTCGAGTAATACTAT--------------------------------- 256
                      ************    ***********                                 

consensus_4552#0      AAAAANA 277
consensus_4552#1      -------