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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4552 cluster # 4552       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4552#0 length = 277 sequences # 1  
consensus_4552#1 length = 256 sequences # 2  

consensusID : consensus_4552#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 277
fasta sequence
                              [CCCACCTGGTGGTAGCACGTGGCCAGGCCGCGGCCGGTGTACATACATACACACGTGTCATGTGTGCTCGATCGAGTAGGACTCAAACGTGTACGTGTATTCTTTTTTTTTTTTGGTTTTGTTTTTTACTTCTTATTGTTCCTCCCCTTTCTGTGTGGATGCGCATCCATCTCTGCATGCGATGTGAGGAGGCCTAGTTAGATTTACAGACGGAGGATGCTACTAAAGTAATACTATAATTCTTTTTGACTAAAAAAAAAAAAAAAAAAAAAAAANA]

[+] EMBL AU161924             [CCCACCTGGTGGTAGCACGTGGCCAGGCCGCGGCCGGTGTACATACATACACACGTGTCATGTGTGCTCGATCGAGTAGGACTCAAACGTGTACGTGTATTCTTTTTTTTTTTTGGTTTTGTTTTTTACTTCTTATTGTTCCTCCCCTTTCTGTGTGGATGCGCATCCATCTCTGCATGCGATGTGAGGAGGCCTAGTTAGATTTACAGACGGAGGATGCTACTAAAGTAATACTATAATTCTTTTTGACTAAAAAAAAAAAAAAAAAAAAAAAANA]


>consensus_4552#0 CCCACCTGGTGGTAGCACGTGGCCAGGCCGCGGCCGGTGTACATACATACACACGTGTCA TGTGTGCTCGATCGAGTAGGACTCAAACGTGTACGTGTATTCTTTTTTTTTTTTGGTTTT GTTTTTTACTTCTTATTGTTCCTCCCCTTTCTGTGTGGATGCGCATCCATCTCTGCATGC GATGTGAGGAGGCCTAGTTAGATTTACAGACGGAGGATGCTACTAAAGTAATACTATAAT TCTTTTTGACTAAAAAAAAAAAAAAAAAAAAAAAANA



consensusID : consensus_4552#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 256
fasta sequence
                              [GCCGCGGGCGGCGGCGGGAGGAAGGTGCCCACCTGGTGGTAGCACGTGGCCAGGCCGCGGCCGGTGTACATACATACACACGTGTCATGTGTGCTCGATCGAGTAGGACTCAAACGTGTATGTGTATTCTTTTTTTTTTTTTTACTTCTTCTTGTTCCTCCCCTTTCTCTGTGGATGCGCATCCATCTCTGCATGCGATGTGAGGAGGCCTAGTTAGATTTACAGACGGAGGATGCTACTACTCGAGTAATACTAT]

[+] EMBL CB966216             [GCCGCGGGCGGCGGCGGGAGGAAGGTGCCCACCTGGTGGTAGCACGTGGCCAGGCCGCGGCCGGTGTACATACATACACACGTGTCATGTGTGCTCGATCGAGTAGGACTCAAACGTGTATGTGTATTCTTTTTTTTTTTTTTACTTCTTCTTGTTCCTCCCCTTTCTCTGTGGATGCGCATCCATCTCTGCATGCGATGTGAGGAGGCCTAGTTAGATTTACAGACGGAGGATGCTACTACTCGAGTAATACTAT]
[+] EMBL CB966700             [ CCGCGGGCGGCGGCGGGAGGAAGGTGCCCACCTGGTGGTAGCACGTGGCCAGGCCGCGGCCGGTGTACATACATACACACGTGTCATGTGTGCTCGATCGAGTAGGACTCAAACGTGTATGTGTATTCTTTTTTTTTTTTTTACTTCTTCTTGTTCCTCCCCTTTCTCTGTGGATGCGCATCCATCTCTGCATGCGATGTGAGGAGGCCTAGTTAGATTTACAGACGGAGGATGCTACTACTAGAGTAATACTAT]


>consensus_4552#1 GCCGCGGGCGGCGGCGGGAGGAAGGTGCCCACCTGGTGGTAGCACGTGGCCAGGCCGCGG CCGGTGTACATACATACACACGTGTCATGTGTGCTCGATCGAGTAGGACTCAAACGTGTA TGTGTATTCTTTTTTTTTTTTTTACTTCTTCTTGTTCCTCCCCTTTCTCTGTGGATGCGC ATCCATCTCTGCATGCGATGTGAGGAGGCCTAGTTAGATTTACAGACGGAGGATGCTACT ACTCGAGTAATACTAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4552#0      ---------------------------CCCACCTGGTGGTAGCACGTGGCCAGGCCGCGG 33
consensus_4552#1      GCCGCGGGCGGCGGCGGGAGGAAGGTGCCCACCTGGTGGTAGCACGTGGCCAGGCCGCGG 60
                                                 *********************************

consensus_4552#0      CCGGTGTACATACATACACACGTGTCATGTGTGCTCGATCGAGTAGGACTCAAACGTGTA 93
consensus_4552#1      CCGGTGTACATACATACACACGTGTCATGTGTGCTCGATCGAGTAGGACTCAAACGTGTA 120
                      ************************************************************

consensus_4552#0      CGTGTATTCTTTTTTTTTTTTGGTTTTGTTTTTTACTTCTTATTGTTCCTCCCCTTTCTG 153
consensus_4552#1      TGTGTATTCTTTTTTTTTTTT-----------TTACTTCTTCTTGTTCCTCCCCTTTCTC 169
                       ********************           ********* ***************** 

consensus_4552#0      TGTGGATGCGCATCCATCTCTGCATGCGATGTGAGGAGGCCTAGTTAGATTTACAGACGG 213
consensus_4552#1      TGTGGATGCGCATCCATCTCTGCATGCGATGTGAGGAGGCCTAGTTAGATTTACAGACGG 229
                      ************************************************************

consensus_4552#0      AGGATGCTACTA---AAGTAATACTATAATTCTTTTTGACTAAAAAAAAAAAAAAAAAAA 270
consensus_4552#1      AGGATGCTACTACTCGAGTAATACTAT--------------------------------- 256
                      ************    ***********                                 

consensus_4552#0      AAAAANA 277
consensus_4552#1      -------
                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)