These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4552#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 277 fasta sequence [CCCACCTGGTGGTAGCACGTGGCCAGGCCGCGGCCGGTGTACATACATACACACGTGTCATGTGTGCTCGATCGAGTAGGACTCAAACGTGTACGTGTATTCTTTTTTTTTTTTGGTTTTGTTTTTTACTTCTTATTGTTCCTCCCCTTTCTGTGTGGATGCGCATCCATCTCTGCATGCGATGTGAGGAGGCCTAGTTAGATTTACAGACGGAGGATGCTACTAAAGTAATACTATAATTCTTTTTGACTAAAAAAAAAAAAAAAAAAAAAAAANA] [+] EMBL AU161924 [CCCACCTGGTGGTAGCACGTGGCCAGGCCGCGGCCGGTGTACATACATACACACGTGTCATGTGTGCTCGATCGAGTAGGACTCAAACGTGTACGTGTATTCTTTTTTTTTTTTGGTTTTGTTTTTTACTTCTTATTGTTCCTCCCCTTTCTGTGTGGATGCGCATCCATCTCTGCATGCGATGTGAGGAGGCCTAGTTAGATTTACAGACGGAGGATGCTACTAAAGTAATACTATAATTCTTTTTGACTAAAAAAAAAAAAAAAAAAAAAAAANA] consensusID : consensus_4552#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 256 fasta sequence [GCCGCGGGCGGCGGCGGGAGGAAGGTGCCCACCTGGTGGTAGCACGTGGCCAGGCCGCGGCCGGTGTACATACATACACACGTGTCATGTGTGCTCGATCGAGTAGGACTCAAACGTGTATGTGTATTCTTTTTTTTTTTTTTACTTCTTCTTGTTCCTCCCCTTTCTCTGTGGATGCGCATCCATCTCTGCATGCGATGTGAGGAGGCCTAGTTAGATTTACAGACGGAGGATGCTACTACTCGAGTAATACTAT] [+] EMBL CB966216 [GCCGCGGGCGGCGGCGGGAGGAAGGTGCCCACCTGGTGGTAGCACGTGGCCAGGCCGCGGCCGGTGTACATACATACACACGTGTCATGTGTGCTCGATCGAGTAGGACTCAAACGTGTATGTGTATTCTTTTTTTTTTTTTTACTTCTTCTTGTTCCTCCCCTTTCTCTGTGGATGCGCATCCATCTCTGCATGCGATGTGAGGAGGCCTAGTTAGATTTACAGACGGAGGATGCTACTACTCGAGTAATACTAT] [+] EMBL CB966700 [ CCGCGGGCGGCGGCGGGAGGAAGGTGCCCACCTGGTGGTAGCACGTGGCCAGGCCGCGGCCGGTGTACATACATACACACGTGTCATGTGTGCTCGATCGAGTAGGACTCAAACGTGTATGTGTATTCTTTTTTTTTTTTTTACTTCTTCTTGTTCCTCCCCTTTCTCTGTGGATGCGCATCCATCTCTGCATGCGATGTGAGGAGGCCTAGTTAGATTTACAGACGGAGGATGCTACTACTAGAGTAATACTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4552#0 ---------------------------CCCACCTGGTGGTAGCACGTGGCCAGGCCGCGG 33 consensus_4552#1 GCCGCGGGCGGCGGCGGGAGGAAGGTGCCCACCTGGTGGTAGCACGTGGCCAGGCCGCGG 60 ********************************* consensus_4552#0 CCGGTGTACATACATACACACGTGTCATGTGTGCTCGATCGAGTAGGACTCAAACGTGTA 93 consensus_4552#1 CCGGTGTACATACATACACACGTGTCATGTGTGCTCGATCGAGTAGGACTCAAACGTGTA 120 ************************************************************ consensus_4552#0 CGTGTATTCTTTTTTTTTTTTGGTTTTGTTTTTTACTTCTTATTGTTCCTCCCCTTTCTG 153 consensus_4552#1 TGTGTATTCTTTTTTTTTTTT-----------TTACTTCTTCTTGTTCCTCCCCTTTCTC 169 ******************** ********* ***************** consensus_4552#0 TGTGGATGCGCATCCATCTCTGCATGCGATGTGAGGAGGCCTAGTTAGATTTACAGACGG 213 consensus_4552#1 TGTGGATGCGCATCCATCTCTGCATGCGATGTGAGGAGGCCTAGTTAGATTTACAGACGG 229 ************************************************************ consensus_4552#0 AGGATGCTACTA---AAGTAATACTATAATTCTTTTTGACTAAAAAAAAAAAAAAAAAAA 270 consensus_4552#1 AGGATGCTACTACTCGAGTAATACTAT--------------------------------- 256 ************ *********** consensus_4552#0 AAAAANA 277 consensus_4552#1 ------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||