These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4553#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1705 fasta sequence [TTCCTTCCTTCTTCTCCTCCTCCTCCTTCTCCCAATCGATCGCATTCGAAGCTTCCTCCGGTAGCTCCGGTGAGGGTGATGGACGACCTGGACATGGCGCTGCCTCAGGCCTTCGAGCTCCTCCTCGGCAGAGATCGAGACGCCTGGCCGCGCGGGGGCCGCGTTCCTCGTCGCCGCCCACTACGGGGACGTCCGCGAAATGAAGAGGATTGCAAAGGAGCTGGACGAGGACGGCAAAGGGATCGAGGCGACTGTGGCTAACACAAGCTTCCTCGGCATGAACGCCCTTCACGCACTGGGTTGGCTCGGCAAGGTGCCGGCCTACCGGTATCTGGTAGAGGAGGTCAAAATGGACGTCAACAAGGCCGACACTGCTCAGGGATTCACACCCCTGGAGCATG-CCGTCTACCATGGTCGCCTGCCTGCCACCAGATACCTCCTTGATCATGGCGCTGATGTGCATCAAATTCGCTCTACGGGAAATGTCTCTCTTCTTCACTCAGCTGCAGTAAAAGGGTTCTCTGAAGTAGCAAAATTTCTGCTTTCTAGAGGAGTTAATGTTGATGCAGAATCAGAAATGGGGACACCACTGGCTCTTGCTGCTTTCAGAGGATATGATAGCACTGTCAAGGTCCTTTTGGAGCACAATGCTGATCCCAACAAGGTTACAAACCAAGGCACTTGGTGCACCTTTAGACTTGGCATTAACCAGCTCTTCTGTGTCCTGTGTGAAGCTGTTGGTTCAGGCTGGAGCTGAAGTGAAAGTTGAGGGGCCAAATAATCATTTGGTAAGAGCTGCTGAGAAAGGCTTAACTGAAGCTATTAAATGCATGTTGGAAGCTGGTGCAAACCCAAATGTTCCTGACAGGCTCGGGAGAATGCCAATAGAGCTGGCTGCTGAGTATGGCACACGGGAAGATGTTGAGATTCTCTTTCCTTTCAGCTCTGCTATTCCAACTGTGGCAAATTGGAGTGTTGATGGAATAATTAATCATGTACAGTCAGAAATCAAGCAACTAGAGGACGATAATTTTATCCAAAAGAGAAGGTCTGACATGAAACAACAAGGGGATGCTGCATTTAAGAAGCAGGATTATCTAAATGCATCAGTGTTCTACACTCAGGCACTGAAGGTTGATCCGTTTGATGGCACGTTGTTCTCAAACAGGAGTCTTTGCTGGCTCCGCATGGGTGATGGAGAAAGGGCTTTGGATGATGCCCATGCATGCGAAAAGCTACGGCCCAAAGTGGGCAAAGTCCTACTATCGGCAAGGAGCAGCTCTAATGTTTCTGAAGGAGTATGAGAGGGCTCATAGGGCACTTGGTCGAGCTTTAGAGTTGGACCCTGAAAGTGAAGAGATCGAGAATTTGTATTGGGAGTCGATGGAACTGTGCGGTTGATCCCTGAAATGCCAGCTACAGATAGAAGAAGCACACGCAGAACTGGAAGCTCCTTTTGTGTTATGAAAGATGGAACGACGCAAACGCTCAGTGATTTGCTGCTTTTTGTGTACATATACTTAGGCTGTCAAAACAGAAACAAATGTCTGGTCTTTTATGTCGTGTTTCGTCGTGACATCTTCCTGGAGTGGCTGTTAGACTAAACTAGCATTATCACATTCTATCTGTTGCTAGTATGGGCAGAGGATGATCAACTGTCTAAGCAAGCTGGAATGATATGAATTCTCTGAAATGTTATGCATAA] [+] EMBL AK072712 [TTCCTTCCTTCTTCTCCTCCTCCTCCTTCTCCCAATCGATCGCATTCGAAGCTTCCTCCGGTAGCTCCGGTGAGGGTGATGGACGACCTGGACATGGCGCTGCCTCAGGCCTTCGAGCTCCTCCTCGGCAGAGATCGAGACGCCTGGCCGCGCGGGGGCCGCGTTCCTCGTCGCCGCCCACTACGGGGACGTCCGCGAAATGAAGAGGATTGCAAAGGAGCTGGACGAGGACGGCAAAGGGATCGAGGCGACTGTGGCTAACACAAGCTTCCTCGGCATGAACGCCCTTCACGCACTGGGTTGGCTCGGCAAGGTGCCGGCCTACCGGTATCTGGTAGAGGAGGTCAAAATGGACGTCAACAAGGCCGACACTGCTCAGGGATTCACACCCCTGGAGCATG CCGTCTACCATGGTCGCCTGCCTGCCACCAGATACCTCCTTGATCATGGCGCTGATGTGCATCAAATTCGCTCTACGGGAAATGTCTCTCTTCTTCACTCAGCTGCAGTAAAAGGGTTCTCTGAAGTAGCAAAATTTCTGCTTTCTAGAGGAGTTAATGTTGATGCAGAATCAGAAATGGGGACACCACTGGCTCTTGCTGCTTTCAGAGGATATGATAGCACTGTCAAGGTCCTTTTGGAGCACAATGCTGATCCCAACAAGGTTACAAACCAAGGCACTTGGTGCACCTTTAGACTTGGCATTAACCAGCTCTTCTGTGTCCTGTGTGAAGCTGTTGGTTCAGGCTGGAGCTGAAGTGAAAGTTGAGGGGCCAAATAATCATTTGGTAAGAGCTGCTGAGAAAGGCTTAACTGAAGCTATTAAATGCATGTTGGAAGCTGGTGCAAACCCAAATGTTCCTGACAGGCTCGGGAGAATGCCAATAGAGCTGGCTGCTGAGTATGGCACACGGGAAGATGTTGAGATTCTCTTTCCTTTCAGCTCTGCTATTCCAACTGTGGCAAATTGGAGTGTTGATGGAATAATTAATCATGTACAGTCAGAAATCAAGCAACTAGAGGACGATAATTTTATCCAAAAGAGAAGGTCTGACATGAAACAACAAGGGGATGCTGCATTTAAGAAGCAGGATTATCTAAATGCATCAGTGTTCTACACTCAGGCACTGAAGGTTGATCCGTTTGATGGCACGTTGTTCTCAAACAGGAGTCTTTGCTGGCTCCGCATGGGTGATGGAGAAAGGGCTTTGGATGATGCCCATGCATGCGAAAAGCTACGGCCCAAAGTGGGCAAAGTCCTACTATCGGCAAGGAGCAGCTCTAATGTTTCTGAAGGAGTATGAGAGGGCTCATAGGGCACTTGGTCGAGCTTTAGAGTTGGACCCTGAAAGTGAAGAGATCGAGAATTTGTATTGGGAGTCGATGGAACTGTGCGGTTGATCCCTGAAATGCCAGCTACAGATAGAAGAAGCACACGCAGAACTGGAAGCTCCTTTTGTGTTATGAAAGATGGAACGACGCAAACGCTCAGTGATTTGCTGCTTTTTGTGTACATATACTTAGGCTGTCAAAACAGAAACAAATGTCTGGTCTTTTATGTCGTGTTTCGTCGTGACATCTTCCTGGAGTGGCTGTTAGACTAAACTAGCATTATCACATTCTATCTGTTGCTAGTATGGGCAGAGGATGATCAACTGTCTAAGCAAGCTGGAATGATATGAATTCTCTGAAATGTTATGCATAA] [+] EMBL C91696 [ TCGAAGCTTCCTCCGGTAGCTCCGGTGAGGGTGATGGACGACCTGGACATGGCGCTGCCTCAGGCCTTCGAGCTCCTCCTCGGCAGAGATCGAGACGCCTGGCCGCGC GGGGCCGCGTTCCTCGTCGCCGCCCACTACGGGGACGTCCGCGAAATGAAGAGGATTGCAAAGGAGCTGGACGAGGACGGCAAAGGGATCGAGGCGACTGTGGCTAACACAAGCTTCCTCGGCATGAACGCCCTTCACGCACTGGGTTGGCTCGGCAAGGTGCCGGCCTACCGGTATCTGGTAGAGGAGGTCAAAATGGACGTCAACAAGGCCGACACTGTTCAGGGATTCACACTCCTNGAGCATGCCCGTCTACCATGGTCG CTGCCTG ] consensusID : consensus_4553#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 581 fasta sequence [AACTGAAGCTATTGGATGCATGTTGGAAGCTGGTGCAAACCCAAATGTTCCTGACAGGGTAAGCCTTCTCCTTTGTCACACCAGTGATATCTGCTTCAGTAGTAAACGGTTTGATACTAATGTATGAGCAAATGCATACATTAGTACAGATCTTCTCATGATATTCAAGGTGTAGAATCATGTAATTTTCAGCATCATTCAACAAAACTTATCCTACTGTGCCAGAAATTTCCCAAAACTTATCTTAGGATCTAATTAGCAGTTATTCCCAGAACTTTTACATTTTAGAATGAACTGATTTCAGTATCTGACTCAGAGTTTTATCTTGTGGTGATCTAGCAGAACATAGGGTTTTATCTTGAGTAATTCTAGATTTCTATCTATAAGTTCACTAATCTTTGCCACAAGTATGGATGAACTAGATGCAAATTAATTAAAGTGTGGTTGCACATTGAATATTGGGATGATTATGTGAGTGCACACTATCATTTAGCAATGTCAATAGATTAAATTTTGAGATATTTGGATGTTGTATTGCAGTATCACTAAGTAATATCGGCAGGTTGGATTTTCAGATGATT] [+] EMBL CB000525 [AACTGAAGCTATTGGATGCATGTTGGAAGCTGGTGCAAACCCAAATGTTCCTGACAGGGTAAGCCTTCTCCTTTGTCACACCAGTGATATCTGCTTCAGTAGTAAACGGTTTGATACTAATGTATGAGCAAATGCATACATTAGTACAGATCTTCTCATGATATTCAAGGTGTAGAATCATGTAATTTTCAGCATCATTCAACAAAACTTATCCTACTGTGCCAGAAATTTCCCAAAACTTATCTTAGGATCTAATTAGCAGTTATTCCCAGAACTTTTACATTTTAGAATGAACTGATTTCAGTATCTGACTCAGAGTTTTATCTTGTGGTGATCTAGCAGAACATAGGGTTTTATCTTGAGTAATTCTAGATTTCTATCTATAAGTTCACTAATCTTTGCCACAAGTATGGATGAACTAGATGCAAATTAATTAAAGTGTGGTTGCACATTGAATATTGGGATGATTATGTGAGTGCACACTATCATTTAGCAATGTCAATAGATTAAATTTTGAGATATTTGGATGTTGTATTGCAGTATCACTAAGTAATATCGGCAGGTTGGATTTTCAGATGATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4553#0 TTCCTTCCTTCTTCTCCTCCTCCTCCTTCTCCCAATCGATCGCATTCGAAGCTTCCTCCG 60 consensus_4553#1 ------------------------------------------------------------ consensus_4553#0 GTAGCTCCGGTGAGGGTGATGGACGACCTGGACATGGCGCTGCCTCAGGCCTTCGAGCTC 120 consensus_4553#1 ------------------------------------------------------------ consensus_4553#0 CTCCTCGGCAGAGATCGAGACGCCTGGCCGCGCGGGGGCCGCGTTCCTCGTCGCCGCCCA 180 consensus_4553#1 ------------------------------------------------------------ consensus_4553#0 CTACGGGGACGTCCGCGAAATGAAGAGGATTGCAAAGGAGCTGGACGAGGACGGCAAAGG 240 consensus_4553#1 ------------------------------------------------------------ consensus_4553#0 GATCGAGGCGACTGTGGCTAACACAAGCTTCCTCGGCATGAACGCCCTTCACGCACTGGG 300 consensus_4553#1 ------------------------------------------------------------ consensus_4553#0 TTGGCTCGGCAAGGTGCCGGCCTACCGGTATCTGGTAGAGGAGGTCAAAATGGACGTCAA 360 consensus_4553#1 ------------------------------------------------------------ consensus_4553#0 CAAGGCCGACACTGCTCAGGGATTCACACCCCTGGAGCATGCCGTCTACCATGGTCGCCT 420 consensus_4553#1 ------------------------------------------------------------ consensus_4553#0 GCCTGCCACCAGATACCTCCTTGATCATGGCGCTGATGTGCATCAAATTCGCTCTACGGG 480 consensus_4553#1 ------------------------------------------------------------ consensus_4553#0 AAATGTCTCTCTTCTTCACTCAGCTGCAGTAAAAGGGTTCTCTGAAGTAGCAAAATTTCT 540 consensus_4553#1 ------------------------------------------------------------ consensus_4553#0 GCTTTCTAGAGGAGTTAATGTTGATGCAGAATCAGAAATGGGGACACCACTGGCTCTTGC 600 consensus_4553#1 ------------------------------------------------------------ consensus_4553#0 TGCTTTCAGAGGATATGATAGCACTGTCAAGGTCCTTTTGGAGCACAATGCTGATCCCAA 660 consensus_4553#1 ------------------------------------------------------------ consensus_4553#0 CAAGGTTACAAACCAAGGCACTTGGTGCACCTTTAGACTTGGCATTAACCAGCTCTTCTG 720 consensus_4553#1 ------------------------------------------------------------ consensus_4553#0 TGTCCTGTGTGAAGCTGTTGGTTCAGGCTGGAGCTGAAGTGAAAGTTGAGGGGCCAAATA 780 consensus_4553#1 ------------------------------------------------------------ consensus_4553#0 ATCATTTGGTAAGAGCTGCTGAGAAAGGCTTAACTGAAGCTATTAAATGCATGTTGGAAG 840 consensus_4553#1 -------------------------------AACTGAAGCTATTGGATGCATGTTGGAAG 29 ************* ************** consensus_4553#0 CTGGTGCAAACCCAAATGTTCCTGACAGGCTCGGGAGAATGCCAATAGAGCTGGCTGCTG 900 consensus_4553#1 CTGGTGCAAACCCAAATGTTCCTGACAGGGT----------------AAGCCTTCTCCTT 73 ***************************** * *** ** ** consensus_4553#0 AGTATGGCACACGGGAAGATGTTGAGATTCTCTTTCCTTTCAGCTCTGCTATTCCAACTG 960 consensus_4553#1 ----TGTCACACCAGT-GATATCTG---CTTCAGTAGTAAACGGTTTGATACTAATGTAT 125 ** ***** * *** * ** * * * * ** ** * consensus_4553#0 TGGCAAATTGGAGTGTTGATGGAATAATTAATCATGTACAGTCAGAAATCAAGCAACTAG 1020 consensus_4553#1 GAGCAAATGCATACATTAGTACAG-ATCTTCTCATG-ATATTCA-AGGTGTAGAATCATG 182 ****** ** * * * * ***** * * *** * * ** * * * consensus_4553#0 AGGACGATAATTTTATCCAAAAGAGAAGGTCTGACATGAAACAACAAGGGGATGCTGCAT 1080 consensus_4553#1 TAATTTTCAGCATCATTCAACAAAA----CTTATCCTACTGTGCCAGAAATTTCCCAAAA 238 * * ** *** * * * * * ** * * * consensus_4553#0 TTAAGAAGCAGGATTATCTAAATGCATCAGTGTTCTACACTCAGGCACTGAAGGTTGATC 1140 consensus_4553#1 CTTATCTTAGGATCTAATTA---GCAGTTATTCCCAGAACTTTTACATTTTAGAATGAAC 295 * * * ** ** *** * * *** ** * ** *** * consensus_4553#0 CGTTTGATGGCACGTTGTTCTCAAACAGGAGTCTTTGCTGGCTCCGCATGGGTGATGGAG 1200 consensus_4553#1 ----TGATTTCA----GTATCTGACTCAGAGTTTTATCTTGT--------GGTGATCTAG 339 **** ** ** * **** ** ** * ****** ** consensus_4553#0 AAAGGGCTTTGGATGATGCCCATGCATGCGAAAAGCTACGGCCCAAAGTGGGCAAAGTCC 1260 consensus_4553#1 CAGAACATAGGGTTTTATCTTGAGTAATTCTAGATTTCTATCTATAAGTTCACTAATCTT 399 * * ** * * * * * * * * **** * ** consensus_4553#0 TACTATCGGCAAGGAGCAGCTCTAATGTTTCTGAAGGAGTATGAGAGGGCTCATAGGGCA 1320 consensus_4553#1 TGCCACAAGTATGGATGAACTA-GATGCAAATTAATTAAAGTGTGGTTGCACATTGAATA 458 * * * * * *** * ** *** * ** * ** * ** *** * * consensus_4553#0 CTTGGTCGAGCTTTAGAGTTGGACCCTGAAAGTGAAGAG-ATCGAGAATTTGTATTGGGA 1379 consensus_4553#1 TTGGGATGATTATGTGAGT-GCACACTATCATTTAGCAATGTCAATAGATTAAATTTTGA 517 * ** ** * **** * ** ** * * * * ** * * ** *** ** consensus_4553#0 GTCGATGGAAC--TGTGCGGTTGATCCCTGAAATGCCAGCTACAGATAGAAGAAGCACAC 1437 consensus_4553#1 GATATTTGGATGTTGTATTGCAGTATCACTAAGTAATATCGGCAGGTTGGATTTTCAGAT 577 * * * * *** * * * ** * * * *** * * * ** * consensus_4553#0 GCAGAACTGGAAGCTCCTTTTGTGTTATGAAAGATGGAACGACGCAAACGCTCAGTGATT 1497 consensus_4553#1 GATT-------------------------------------------------------- 581 * consensus_4553#0 TGCTGCTTTTTGTGTACATATACTTAGGCTGTCAAAACAGAAACAAATGTCTGGTCTTTT 1557 consensus_4553#1 ------------------------------------------------------------ consensus_4553#0 ATGTCGTGTTTCGTCGTGACATCTTCCTGGAGTGGCTGTTAGACTAAACTAGCATTATCA 1617 consensus_4553#1 ------------------------------------------------------------ consensus_4553#0 CATTCTATCTGTTGCTAGTATGGGCAGAGGATGATCAACTGTCTAAGCAAGCTGGAATGA 1677 consensus_4553#1 ------------------------------------------------------------ consensus_4553#0 TATGAATTCTCTGAAATGTTATGCATAA 1705 consensus_4553#1 ---------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||