cluster # 4555

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Oryza sativa
cluster # 4555 cluster # 4555 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4555#0 length = 385 sequences # 2

consensus_4555#1 length = 202 sequences # 1

consensusID : consensus_4555#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 385
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGAAAAAAACCCGGGCTTTTTTTTTAAAATTTCCCCCCCCAAAAAAAATGGGGGGCCTTTAAAAAAAAACCCCCCCGGAGGGGGGGGGAAAAAATTTTTCCTTTTGGTTAAAAACCAAGGGCCTTGGAAAGGGGCCAAACCCAACCGGGAAAAAAAAAAATTTTGCCAATTTTTTTTTGGGTTTTTAAAAAAAAAGCCCCAAAAAAAAGGGGTTTTTTTTTTTTTTGGGGGGAATCCCCCCCCGGGGAGGTTGGTTTTTACTTAATTGGCCCCAAAATTCTTTAAAACTGGGGGGTTTTTGGGCAAAAAAATAAAAA]

[+] EMBL CF336667             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGAAAAAAACCCGGGCTTTTTTTTTAAAATTTCCCCCCCCAAAAAAAATGGGGGGCCTTTAAAAAAAAACCCCCCCGGAGGGGGGGGGAAAAAATTTTTCCTTTTGGTTAAAAACCAAGGGCCTTGGAAAGGGGCCAAACCCAACCGGGAAAAAAAAAAATTTTGCCAATTTTTTTTTGGGTTTTTAAAAAAAAAGCCCCAAAAAAAAGGGGTTTTTTTTTTTTTTGGGGGGAATCCCCCCCCGGGGAGGTTGGTTTTTACTTAATTGGCCCCAAAATTCTTTAAAACTGGGGGGTTTTTGGGCAAAAAAATAAAAA]
[+] EMBL CF298332             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGG AAAAAACCGGGGCTTTTTTTTTAAAAATTCCCCCCCCAAAAAAATTGGGGGTCCTTTAAAAAAAAAACCCCCCGGAAGGGGGGGGAAAAAATTTTTCCTTTTTGTTAAAAACCAAGGGCCTTTGAAAGGGGCCTAACCCAACCGGGAAAAAAAAAAATATAACCAATTTTTTTTTGGGATTTTAAAAAAAAAACCCCAAAAAAAAGGGGGTTTTTTTTTTTTTGGGGGGAATTCCCCCCCGGGGAGGTTGGTTTTTATTTAATTGGCCCCAAAATCCTTCCAAACTGGGGGGTTTTGGGGGAAAAAAAAAAA  ]




>consensus_4555#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTGGGGAAAAAAACCCGGGCTTTTTTTTTAAAATTTCCCCCCCCAAAAAAAATGGG
GGGCCTTTAAAAAAAAACCCCCCCGGAGGGGGGGGGAAAAAATTTTTCCTTTTGGTTAAA
AACCAAGGGCCTTGGAAAGGGGCCAAACCCAACCGGGAAAAAAAAAAATTTTGCCAATTT
TTTTTTGGGTTTTTAAAAAAAAAGCCCCAAAAAAAAGGGGTTTTTTTTTTTTTTGGGGGG
AATCCCCCCCCGGGGAGGTTGGTTTTTACTTAATTGGCCCCAAAATTCTTTAAAACTGGG
GGGTTTTTGGGCAAAAAAATAAAAA

consensusID : consensus_4555#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 202
fasta sequence

                              [TAGTCTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAACCCCCCCCCAACAAAAATGGGAAACCTTTAAAAAAAAACCCGCCGGGAGGGGGGGGGAAAAAATTTTTCCTTTTGGGTAAAAACCAAGGGCCTTGGAAAGGGCCCAAACCCAACCGG]

[+] EMBL CF325740             [TAGTCTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAACCCCCCCCCAACAAAAATGGGAAACCTTTAAAAAAAAACCCGCCGGGAGGGGGGGGGAAAAAATTTTTCCTTTTGGGTAAAAACCAAGGGCCTTGGAAAGGGCCCAAACCCAACCGG]




>consensus_4555#1
TAGTCTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTAAAAAAACCCCCCCCCAACAAAAATGGGAAACCTTTAAAAAA
AAACCCGCCGGGAGGGGGGGGGAAAAAATTTTTCCTTTTGGGTAAAAACCAAGGGCCTTG
GAAAGGGCCCAAACCCAACCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4555#0      ---TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 57
consensus_4555#1      TAGTCTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60
                         * *    **************************************************

consensus_4555#0      TTTTTTTTTGGGGAAAAAAACCCGGGCTTTTTTTTTAAAATTTCCCCCCCCAAAAAAAAT 117
consensus_4555#1      TTTTTTTTT-----------------TTTTTTTTTAAAAAAACCCCCCCCCAACAAAAAT 103
                      *********                  ******** ****   ********** ******

consensus_4555#0      GGGGGGCCTTTAAAAAAAAACCCCCCCGGAGGGGGGGGGAAAAAATTTTTCCTTTTGGTT 177
consensus_4555#1      GGGAAACCTTTAAAAAAAAACCCGCCGGGAGGGGGGGGGAAAAAATTTTTCCTTTTGGGT 163
                      ***   ***************** ** ******************************* *

consensus_4555#0      AAAAACCAAGGGCCTTGGAAAGGGGCCAAACCCAACCGGGAAAAAAAAAAATTTTGCCAA 237
consensus_4555#1      AAAAACCAAGGGCCTTGGAAAGGGCCCAAACCCAACCGG--------------------- 202
                      ************************ **************                     

consensus_4555#0      TTTTTTTTTGGGTTTTTAAAAAAAAAGCCCCAAAAAAAAGGGGTTTTTTTTTTTTTTGGG 297
consensus_4555#1      ------------------------------------------------------------
                                                                                  

consensus_4555#0      GGGAATCCCCCCCCGGGGAGGTTGGTTTTTACTTAATTGGCCCCAAAATTCTTTAAAACT 357
consensus_4555#1      ------------------------------------------------------------
                                                                                  

consensus_4555#0      GGGGGGTTTTTGGGCAAAAAAATAAAAA 385
consensus_4555#1      ----------------------------