These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_456#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 407 fasta sequence [GCATGCGGCAAATAAATCANTCNCAACCGCTACAGGCCCCATGACATGGCCCCTTTGTCCTCGTCATCGGTCTTTTATTCCTTCGACCACACAAGCTTCCCCTCATTCCTACGACTTTGAACCTGGCCCCCCATGGTCTTGACTCTGCAACCCTCGCAAGATCAATCAAGATGAACAACCCCCGGCTAAGCTAGGGAATCTTGAGCGGGGCAACATTGGGGGAAGTGTTTTTCCCAACTTTGTAATGACATGAGCTACGCATTTCTAAAGGGACCCGGTACGGAAGGAATCGGTTGCAGAGATATCACAGGCGGAACAGGACGGCAGATTATGAATTTCTAGAAATAGAGACGCAAATCTGAGCTCGAATTGAGCCTTCCNAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AT003493 [GCATGCGGCAAATAAATCANTCNCAACCGCTACAGGCCCCATGACATGGCCCCTTTGTCCTCGTCATCGGTCTTTTATTCCTTCGACCACACAAGCTTCCCCTCATTCCTACGACTTTGAACCTGGCCCCCCATGGTCTTGACTCTGCAACCCTCGCAAGATCAATCAAGATGAACAACCCCCGGCTAAGCTAGGGAATCTTGAGCGGGGCAACATTGGGGGAAGTGTTTTTCCCAACTTTGTAATGACATGAGCTACGCATTTCTAAAGGGACCCGGTACGGAAGGAATCGGTTGCAGAGATATCACAGGCGGAACAGGACGGCAGATTATGAATTTCTAGAAATAGAGACGCAAATCTGAGCTCGAATTGAGCCTTCCNAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_456#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 398 fasta sequence [TCANTCNCAACCCGGNTNCAGGNCCCCCATGACATGGCCCCTTTGTCCTCGTCATCGGTNTTTTATTCCTTNGACCNCNCAAGCTTCCCCTCATTCCTACGACTTTGAACCTGGCCCCCCATGGTTTTGACTTTGCAACNCTCGCAAGATCAATCAANATGAACNNCCCCCGGNTAAGNTAGGGAATNTTGAGCGGGGCANCATTGGGGGAAGTGTTTTTCCCNNCTTTGTAATGACATNAGCTACGCATTTTTAAAGGGACCCGGTACGGAAGGAATCGGTTGCANAGATNTCNCAGGCGGAACAGGNCGGCAGATTNTGAATTTNTANAAATANAGACNCAAATTTGAGCTCGAATTGAGCNTTNCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AT003599 [TCANTCNCAACCCGGNTNCAGGNCCCCCATGACATGGCCCCTTTGTCCTCGTCATCGGTNTTTTATTCCTTNGACCNCNCAAGCTTCCCCTCATTCCTACGACTTTGAACCTGGCCCCCCATGGTTTTGACTTTGCAACNCTCGCAAGATCAATCAANATGAACNNCCCCCGGNTAAGNTAGGGAATNTTGAGCGGGGCANCATTGGGGGAAGTGTTTTTCCCNNCTTTGTAATGACATNAGCTACGCATTTTTAAAGGGACCCGGTACGGAAGGAATCGGTTGCANAGATNTCNCAGGCGGAACAGGNCGGCAGATTNTGAATTTNTANAAATANAGACNCAAATTTGAGCTCGAATTGAGCNTTNCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_456#0 GCATGCGGCAAATAAATCANTCNCAACC--GCTACAGGCCCC--ATGACATGGCCCCTTT 56 consensus_456#1 ----------------TCANTCNCAACCCGGNTNCAGGNCCCCCATGACATGGCCCCTTT 44 ************ * * **** *** **************** consensus_456#0 GTCCTCGTCATCGGTCTTTTATTCCTTCGACCACACAAGCTTCCCCTCATTCCTACGACT 116 consensus_456#1 GTCCTCGTCATCGGTNTTTTATTCCTTNGACCNCNCAAGCTTCCCCTCATTCCTACGACT 104 *************** *********** **** * ************************* consensus_456#0 TTGAACCTGGCCCCCCATGGTCTTGACTCTGCAACCCTCGCAAGATCAATCAAGATGAAC 176 consensus_456#1 TTGAACCTGGCCCCCCATGGTTTTGACTTTGCAACNCTCGCAAGATCAATCAANATGAAC 164 ********************* ****** ****** ***************** ****** consensus_456#0 AACCCCCGGCTAAGCTAGGGAATCTTGAGCGGGGCAACATTGGGGGAAGTGTTTTTCCCA 236 consensus_456#1 NNCCCCCGGNTAAGNTAGGGAATNTTGAGCGGGGCANCATTGGGGGAAGTGTTTTTCCCN 224 ******* **** ******** ************ ********************** consensus_456#0 ACTTTGTAATGACATGAGCTACGCATTTCTAAAGGGACCCGGTACGGAAGGAATCGGTTG 296 consensus_456#1 NCTTTGTAATGACATNAGCTACGCATTTTTAAAGGGACCCGGTACGGAAGGAATCGGTTG 284 ************** ************ ******************************* consensus_456#0 CAGAGATATCACAGGCGGAACAGGACGGCAGATTATGAATTTCTAGAAATAGAGACGCAA 356 consensus_456#1 CANAGATNTCNCAGGCGGAACAGGNCGGCAGATTNTGAATTTNTANAAATANAGACNCAA 344 ** **** ** ************* ********* ******* ** ***** **** *** consensus_456#0 ATCTGAGCTCGAATTGAGCCTTCCNAAAAAAAAAAAAAAAAAAAAAAAAAA--- 407 consensus_456#1 ATTTGAGCTCGAATTGAGCNTTNCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 398 ** **************** ** **************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||