These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4565#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2173 fasta sequence [GGAGAAAAAGCTCTTGCCTGCTCTTTTCTTGGCTCCGCTTTGTTCTTGCTCTCATCTTGCTCGTGGCGTGGTAGTCTTCGACTCGTTCTTTTTGTTGTTGTTGTTGTTGTGGTGGTGGTGGTGGTGGTAGTGCGTGAGTGAGTGAGTGAGTGGTGGCGATGTCGTCGCCGTCGTCGCCGCCGCCGGCTAACCAGACGGCGACACCGCCTCCGGCTAACCAGACGGCGGCGCCACCTCCGGCGAGCAACAACTCGTCGTCGCCGCCGGCGCCGGGCTCTTTGTCTCCGCCCTCGCTGACGCCTCCCGCAGCGCCATCGCCTCCGTCGACCACGCCCTCCTCGCCGGCGGCGGCGGCGGCGGCGTCGAGCTCGGGGCTGACGACGCCCGTGGTGGTGGGGATCGTGGTGGGCGGCCTCGTCGTGCTGCTGCTCGTCACCATCCTGCTCGTCTGCCTGTTCAAGAAGAAGAAGCGGCACCACCACCACCACCCTCCGCCGCCGCCGCCGCCGCACCTCCTGCACTACTACGGCCACCCGCCGCCGCCGCCGCCGCCCCCGCCGCCGTTCAAAGGGGATCACTATGGTGGGGTGTACCAAAATTGGCAGCAAAATGGTCCTCCACCTCCACCTGATCATGTGCTGAAGAAGGTGCCTTCGCATCCTTCCCCTCCACCACCTCCTGCTCCACTAAATGTACACAGTGGTGGTTCTGGCTCAAATTACTCCGGTGGCGACAACAGCCAACCTCTAGTGTCACCTGGTGCTGCATTGGGTTTTTCAAGGTGTACTTTCACTTATGAGGACTTGTCAGCGGCGACCGATGGATTCTCCGATGCTAATCTGCTCGGACAGGGCGGTTTTGGGTATGTTCACAAAGGAGTTCTGCCGAATGGGACAGAGGTTGCTGTGAAGCAATTGAGAGATGGGAGTGGGCAGGGAGAGCGTGAATTTCAGGCGGAGGTTGAGATTATCAGCCGGGTACATCACAAGCATCTTGTAACATTGGTTGGTTATTGCATTTCTGGAGGGAAGAGGTTGCTTGTCTATGAGTATGTTCCAAACAACACATTGGAGCTCCACTTGCATGGGAGAGGCCGACCAACCATGGAATGGCCTACAAGATTACGCATTGCTTTGGGTGCTGCGAAGGGATTGGCATATCTTCATGAAGATTGCCATCCTAAGATCATTCACCGTGACATAAAGTCAGCAAATATTCTTCTTGACGCGAGATTTGAGGCAAAGGTGGCAGATTTCGGACTTGCAAAATTGACTTCTGATAATAACACTCATGTTTCAACCAGAGTAATGGGCACATTTGGGTACCTTGCACCAGAGTATGCGTCTTCTGGCCAGCTAACTGAGAAATCAGATGTCTTTTCTTTCGGAGTAATGCTTCTTGAGCTAATAACTGGCCGCCGTCCTGTGAGATCGAACCAATCACAGATGGATGACAGCTTGGTTGATTGGGCAAGGCCTTTAATGATGCGAGCATCAGATGATGGCAATTATGATGCTTTAGTGGATCCACGGCTAGGACAGGAGTACAATGGTAACGAGATGGCGAGGATGATTGCTTGTGCAGCTGCTTGTGTACGCCATTCTGCACGCCGACGCCCACGGATGAGCCAGGTTGTTCGGGCCTTGGAAGGCGATGTGTCATTGGATGATCTGAACGAAGGTGTTCGTCCTGGCCATAGCCGATTCTTGGGATCATACAACAGCAACGAGTACGACACGGGCCATTACAATGAAGACCTGAAGAAATTCAGGAAGATGGCATTTGGCAGTGGCAATCTAGAGAGCAGCCAGCAAACGCAGCCCACCGAGTTCGTCCCGAATCGATCCGTATCAATGGGGGATGCGCGTCAAATACCGGAGACGGAGATGGAGATGGGGAGTTTGAAGAAAGATGGCGACAGCAATGGCACCAGAGACAGCCA-AGCTTCATGAGATAACCTCATCTTCCTTGTTTTTTTAGGACATTGCAACTACCGTAGCTTGTAAAGTCCCAGCCTTAGCTGAAAATTCTCATAAGTTGCTGACATTGTTTGCAACGAACCGAAATTGTTTGGTTGAGATATATATAGTTCGAGAGTTCTCGGTAGCTGCAATTCACTGCTTCTTTTCACTGAATTTTTCCTGTGCACCTTTCTGATCTGCATTACGTTTTT] [+] EMBL AK103247 [GGAGAAAAAGCTCTTGCCTGCTCTTTTCTTGGCTCCGCTTTGTTCTTGCTCTCATCTTGCTCGTGGCGTGGTAGTCTTCGACTCGTTCTTTTTGTTGTTGTTGTTGTTGTGGTGGTGGTGGTGGTGGTAGTGCGTGAGTGAGTGAGTGAGTGGTGGCGATGTCGTCGCCGTCGTCGCCGCCGCCGGCTAACCAGACGGCGACACCGCCTCCGGCTAACCAGACGGCGGCGCCACCTCCGGCGAGCAACAACTCGTCGTCGCCGCCGGCGCCGGGCTCTTTGTCTCCGCCCTCGCTGACGCCTCCCGCAGCGCCATCGCCTCCGTCGACCACGCCCTCCTCGCCGGCGGCGGCGGCGGCGGCGTCGAGCTCGGGGCTGACGACGCCCGTGGTGGTGGGGATCGTGGTGGGCGGCCTCGTCGTGCTGCTGCTCGTCACCATCCTGCTCGTCTGCCTGTTCAAGAAGAAGAAGCGGCACCACCACCACCACCCTCCGCCGCCGCCGCCGCCGCACCTCCTGCACTACTACGGCCACCCGCCGCCGCCGCCGCCGCCCCCGCCGCCGTTCAAAGGGGATCACTATGGTGGGGTGTACCAAAATTGGCAGCAAAATGGTCCTCCACCTCCACCTGATCATGTGCTGAAGAAGGTGCCTTCGCATCCTTCCCCTCCACCACCTCCTGCTCCACTAAATGTACACAGTGGTGGTTCTGGCTCAAATTACTCCGGTGGCGACAACAGCCAACCTCTAGTGTCACCTGGTGCTGCATTGGGTTTTTCAAGGTGTACTTTCACTTATGAGGACTTGTCAGCGGCGACCGATGGATTCTCCGATGCTAATCTGCTCGGACAGGGCGGTTTTGGGTATGTTCACAAAGGAGTTCTGCCGAATGGGACAGAGGTTGCTGTGAAGCAATTGAGAGATGGGAGTGGGCAGGGAGAGCGTGAATTTCAGGCGGAGGTTGAGATTATCAGCCGGGTACATCACAAGCATCTTGTAACATTGGTTGGTTATTGCATTTCTGGAGGGAAGAGGTTGCTTGTCTATGAGTATGTTCCAAACAACACATTGGAGCTCCACTTGCATGGGAGAGGCCGACCAACCATGGAATGGCCTACAAGATTACGCATTGCTTTGGGTGCTGCGAAGGGATTGGCATATCTTCATGAAGATTGCCATCCTAAGATCATTCACCGTGACATAAAGTCAGCAAATATTCTTCTTGACGCGAGATTTGAGGCAAAGGTGGCAGATTTCGGACTTGCAAAATTGACTTCTGATAATAACACTCATGTTTCAACCAGAGTAATGGGCACATTTGGGTACCTTGCACCAGAGTATGCGTCTTCTGGCCAGCTAACTGAGAAATCAGATGTCTTTTCTTTCGGAGTAATGCTTCTTGAGCTAATAACTGGCCGCCGTCCTGTGAGATCGAACCAATCACAGATGGATGACAGCTTGGTTGATTGGGCAAGGCCTTTAATGATGCGAGCATCAGATGATGGCAATTATGATGCTTTAGTGGATCCACGGCTAGGACAGGAGTACAATGGTAACGAGATGGCGAGGATGATTGCTTGTGCAGCTGCTTGTGTACGCCATTCTGCACGCCGACGCCCACGGATGAGCCAGGTTGTTCGGGCCTTGGAAGGCGATGTGTCATTGGATGATCTGAACGAAGGTGTTCGTCCTGGCCATAGCCGATTCTTGGGATCATACAACAGCAACGAGTACGACACGGGCCATTACAATGAAGACCTGAAGAAATTCAGGAAGATGGCATTTGGCAGTGGCAATCTAGAGAGCAGCCAGCAAACGCAGCCCACCGAGTTCGTCCCGAATCGATCCGTATCAATGGGGGATGCGCGTCAAATACCGGAGACGGAGATGGAGATGGGGAGTTTGAAGAAAGATGGCGACAGCAATGGCACCAGAGACAGCCA AGCTTCATGAGATAACCTCATCTTCCTTGTTTTTTTAGGACATTGCAACTACCGTAGCTTGTAAAGTCCCAGCCTTAGCTGAAAATTCTCATAAGTTGCTGACATTGTTTGCAACGAACCGAAATTGTTTGGTTGAGATATATATAGTTCGAGAGTTCTCGGTAGCTGCAATTCACTGCTTCTTTTCACTGAATTTTTCCTGTGCACCTTTCTGATCTGCATTACGTTTTT] [+] EMBL AU162125 [ GAACGAAGGTGTTCGTCCTGGCCATAGCCGATTCTTGGGATCATACAACAGCAACGAGTACGACACGGGCCATTACAATGAAGACCTGAAGAAATTCAGGAAGATGGCATTTGGCAGTGGCAATCTAGAGAGCAGCCAGCAAACGCAGCCCACCGAGTTCGTCCCGAATCGATCCGTATCAATGGGGGATGCGCGTCAAATACCGGAGACGGAGATGGAGATGGGGAGTTTGAAG AAGATGGCGACA CAATGGCACCAGAGACAGCCANAGCTTCATGAGATAAacc ] consensusID : consensus_4565#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 703 fasta sequence [TGGATGACAGCTTGGTTGATTGGGCAAGGCCTTTAATGATGCGAGCATCAGATGATGGCAATTATGATGCTTTAGTGGATCCACGGCTAGGACAGGAGTACAATGGTAACGAGATGGCGAGGATGATTGCTTGTGCAGCTGCTTGTGTACGCCATTCTGCACGCCGACGCCCACGGATGAGCCAGGTTGTTCGGGCCTTGGAAGGCGATGTGTCATTGGATGATCTGAACGAAGGTGTTCGTTCTGGCCATAGCCGATTCTTGGGATCATTCAACAGCAACGAGTGCGACACGGGCCATTCCAATGAAGGCCTGAAGAAATTCAGGAAGATGGCATTTGGCAGTGGCAATCTAGAGAGCAGCCAGCAAACGCAGCCCACCGAGTTCGTCCCGAATCGATCCGTATCAATGGGGGATGGGCGTCAAATACCGGAGACGGAGATGGAGATGGGGAGTTTGAAGAAAGATGGCGACAGCAATGGCACCAGAGACAGCCAAGCTTCATGAGATAACCTCATTTTCCTTGTTTTTTTAGGACATTGCAACTACCGTAGCTTGTAAAGTCCCAGCCTTAGCTGAAAATTCTCATAAGTTGCTGACATTGTTTGCAACGAACCGAAATTGTTTGGTTGAGATATATATAGTTCGAGAGTTCTCGGTAGGTGCAATTCACTGCTTCTTTTCTCTGAAAAAAAAAAAAAAGG] [-] EMBL CB682009 [TGGATGACAGCTTGGTTGATTGGGCAAGGCCTTTAATGATGCGAGCATCAGATGATGGCAATTATGATGCTTTAGTGGATCCACGGCTAGGACAGGAGTACAATGGTAACGAGATGGCGAGGATGATTGCTTGTGCAGCTGCTTGTGTACGCCATTCTGCACGCCGACGCCCACGGATGAGCCAGGTTGTTCGGGCCTTGGAAGGCGATGTGTCATTGGATGATCTGAACGAAGGTGTTCGTTCTGGCCATAGCCGATTCTTGGGATCATTCAACAGCAACGAGTGCGACACGGGCCATTCCAATGAAGGCCTGAAGAAATTCAGGAAGATGGCATTTGGCAGTGGCAATCTAGAGAGCAGCCAGCAAACGCAGCCCACCGAGTTCGTCCCGAATCGATCCGTATCAATGGGGGATGGGCGTCAAATACCGGAGACGGAGATGGAGATGGGGAGTTTGAAGAAAGATGGCGACAGCAATGGCACCAGAGACAGCCAAGCTTCATGAGATAACCTCATTTTCCTTGTTTTTTTAGGACATTGCAACTACCGTAGCTTGTAAAGTCCCAGCCTTAGCTGAAAATTCTCATAAGTTGCTGACATTGTTTGCAACGAACCGAAATTGTTTGGTTGAGATATATATAGTTCGAGAGTTCTCGGTAGGTGCAATTCACTGCTTCTTTTCTCTGAAAAAAAAAAAAAAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4565#0 GGAGAAAAAGCTCTTGCCTGCTCTTTTCTTGGCTCCGCTTTGTTCTTGCTCTCATCTTGC 60 consensus_4565#1 ------------------------------------------------------------ consensus_4565#0 TCGTGGCGTGGTAGTCTTCGACTCGTTCTTTTTGTTGTTGTTGTTGTTGTGGTGGTGGTG 120 consensus_4565#1 ------------------------------------------------------------ consensus_4565#0 GTGGTGGTAGTGCGTGAGTGAGTGAGTGAGTGGTGGCGATGTCGTCGCCGTCGTCGCCGC 180 consensus_4565#1 ------------------------------------------------------------ consensus_4565#0 CGCCGGCTAACCAGACGGCGACACCGCCTCCGGCTAACCAGACGGCGGCGCCACCTCCGG 240 consensus_4565#1 ------------------------------------------------------------ consensus_4565#0 CGAGCAACAACTCGTCGTCGCCGCCGGCGCCGGGCTCTTTGTCTCCGCCCTCGCTGACGC 300 consensus_4565#1 ------------------------------------------------------------ consensus_4565#0 CTCCCGCAGCGCCATCGCCTCCGTCGACCACGCCCTCCTCGCCGGCGGCGGCGGCGGCGG 360 consensus_4565#1 ------------------------------------------------------------ consensus_4565#0 CGTCGAGCTCGGGGCTGACGACGCCCGTGGTGGTGGGGATCGTGGTGGGCGGCCTCGTCG 420 consensus_4565#1 ------------------------------------------------------------ consensus_4565#0 TGCTGCTGCTCGTCACCATCCTGCTCGTCTGCCTGTTCAAGAAGAAGAAGCGGCACCACC 480 consensus_4565#1 ------------------------------------------------------------ consensus_4565#0 ACCACCACCCTCCGCCGCCGCCGCCGCCGCACCTCCTGCACTACTACGGCCACCCGCCGC 540 consensus_4565#1 ------------------------------------------------------------ consensus_4565#0 CGCCGCCGCCGCCCCCGCCGCCGTTCAAAGGGGATCACTATGGTGGGGTGTACCAAAATT 600 consensus_4565#1 ------------------------------------------------------------ consensus_4565#0 GGCAGCAAAATGGTCCTCCACCTCCACCTGATCATGTGCTGAAGAAGGTGCCTTCGCATC 660 consensus_4565#1 ------------------------------------------------------------ consensus_4565#0 CTTCCCCTCCACCACCTCCTGCTCCACTAAATGTACACAGTGGTGGTTCTGGCTCAAATT 720 consensus_4565#1 ------------------------------------------------------------ consensus_4565#0 ACTCCGGTGGCGACAACAGCCAACCTCTAGTGTCACCTGGTGCTGCATTGGGTTTTTCAA 780 consensus_4565#1 ------------------------------------------------------------ consensus_4565#0 GGTGTACTTTCACTTATGAGGACTTGTCAGCGGCGACCGATGGATTCTCCGATGCTAATC 840 consensus_4565#1 ------------------------------------------------------------ consensus_4565#0 TGCTCGGACAGGGCGGTTTTGGGTATGTTCACAAAGGAGTTCTGCCGAATGGGACAGAGG 900 consensus_4565#1 ------------------------------------------------------------ consensus_4565#0 TTGCTGTGAAGCAATTGAGAGATGGGAGTGGGCAGGGAGAGCGTGAATTTCAGGCGGAGG 960 consensus_4565#1 ------------------------------------------------------------ consensus_4565#0 TTGAGATTATCAGCCGGGTACATCACAAGCATCTTGTAACATTGGTTGGTTATTGCATTT 1020 consensus_4565#1 ------------------------------------------------------------ consensus_4565#0 CTGGAGGGAAGAGGTTGCTTGTCTATGAGTATGTTCCAAACAACACATTGGAGCTCCACT 1080 consensus_4565#1 ------------------------------------------------------------ consensus_4565#0 TGCATGGGAGAGGCCGACCAACCATGGAATGGCCTACAAGATTACGCATTGCTTTGGGTG 1140 consensus_4565#1 ------------------------------------------------------------ consensus_4565#0 CTGCGAAGGGATTGGCATATCTTCATGAAGATTGCCATCCTAAGATCATTCACCGTGACA 1200 consensus_4565#1 ------------------------------------------------------------ consensus_4565#0 TAAAGTCAGCAAATATTCTTCTTGACGCGAGATTTGAGGCAAAGGTGGCAGATTTCGGAC 1260 consensus_4565#1 ------------------------------------------------------------ consensus_4565#0 TTGCAAAATTGACTTCTGATAATAACACTCATGTTTCAACCAGAGTAATGGGCACATTTG 1320 consensus_4565#1 ------------------------------------------------------------ consensus_4565#0 GGTACCTTGCACCAGAGTATGCGTCTTCTGGCCAGCTAACTGAGAAATCAGATGTCTTTT 1380 consensus_4565#1 ------------------------------------------------------------ consensus_4565#0 CTTTCGGAGTAATGCTTCTTGAGCTAATAACTGGCCGCCGTCCTGTGAGATCGAACCAAT 1440 consensus_4565#1 ------------------------------------------------------------ consensus_4565#0 CACAGATGGATGACAGCTTGGTTGATTGGGCAAGGCCTTTAATGATGCGAGCATCAGATG 1500 consensus_4565#1 ------TGGATGACAGCTTGGTTGATTGGGCAAGGCCTTTAATGATGCGAGCATCAGATG 54 ****************************************************** consensus_4565#0 ATGGCAATTATGATGCTTTAGTGGATCCACGGCTAGGACAGGAGTACAATGGTAACGAGA 1560 consensus_4565#1 ATGGCAATTATGATGCTTTAGTGGATCCACGGCTAGGACAGGAGTACAATGGTAACGAGA 114 ************************************************************ consensus_4565#0 TGGCGAGGATGATTGCTTGTGCAGCTGCTTGTGTACGCCATTCTGCACGCCGACGCCCAC 1620 consensus_4565#1 TGGCGAGGATGATTGCTTGTGCAGCTGCTTGTGTACGCCATTCTGCACGCCGACGCCCAC 174 ************************************************************ consensus_4565#0 GGATGAGCCAGGTTGTTCGGGCCTTGGAAGGCGATGTGTCATTGGATGATCTGAACGAAG 1680 consensus_4565#1 GGATGAGCCAGGTTGTTCGGGCCTTGGAAGGCGATGTGTCATTGGATGATCTGAACGAAG 234 ************************************************************ consensus_4565#0 GTGTTCGTCCTGGCCATAGCCGATTCTTGGGATCATACAACAGCAACGAGTACGACACGG 1740 consensus_4565#1 GTGTTCGTTCTGGCCATAGCCGATTCTTGGGATCATTCAACAGCAACGAGTGCGACACGG 294 ******** *************************** ************** ******** consensus_4565#0 GCCATTACAATGAAGACCTGAAGAAATTCAGGAAGATGGCATTTGGCAGTGGCAATCTAG 1800 consensus_4565#1 GCCATTCCAATGAAGGCCTGAAGAAATTCAGGAAGATGGCATTTGGCAGTGGCAATCTAG 354 ****** ******** ******************************************** consensus_4565#0 AGAGCAGCCAGCAAACGCAGCCCACCGAGTTCGTCCCGAATCGATCCGTATCAATGGGGG 1860 consensus_4565#1 AGAGCAGCCAGCAAACGCAGCCCACCGAGTTCGTCCCGAATCGATCCGTATCAATGGGGG 414 ************************************************************ consensus_4565#0 ATGCGCGTCAAATACCGGAGACGGAGATGGAGATGGGGAGTTTGAAGAAAGATGGCGACA 1920 consensus_4565#1 ATGGGCGTCAAATACCGGAGACGGAGATGGAGATGGGGAGTTTGAAGAAAGATGGCGACA 474 *** ******************************************************** consensus_4565#0 GCAATGGCACCAGAGACAGCCAAGCTTCATGAGATAACCTCATCTTCCTTGTTTTTTTAG 1980 consensus_4565#1 GCAATGGCACCAGAGACAGCCAAGCTTCATGAGATAACCTCATTTTCCTTGTTTTTTTAG 534 ******************************************* **************** consensus_4565#0 GACATTGCAACTACCGTAGCTTGTAAAGTCCCAGCCTTAGCTGAAAATTCTCATAAGTTG 2040 consensus_4565#1 GACATTGCAACTACCGTAGCTTGTAAAGTCCCAGCCTTAGCTGAAAATTCTCATAAGTTG 594 ************************************************************ consensus_4565#0 CTGACATTGTTTGCAACGAACCGAAATTGTTTGGTTGAGATATATATAGTTCGAGAGTTC 2100 consensus_4565#1 CTGACATTGTTTGCAACGAACCGAAATTGTTTGGTTGAGATATATATAGTTCGAGAGTTC 654 ************************************************************ consensus_4565#0 TCGGTAGCTGCAATTCACTGCTTCTTTTCACTGAATTTTTCCTGTGCACCTTTCTGATCT 2160 consensus_4565#1 TCGGTAGGTGCAATTCACTGCTTCTTTTCTCTGAAAAAAAAAAAAAAGG----------- 703 ******* ********************* ***** consensus_4565#0 GCATTACGTTTTT 2173 consensus_4565#1 ------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||