cluster # 4568

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Oryza sativa
cluster # 4568 cluster # 4568 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4568#0 length = 1662 sequences # 2

consensus_4568#1 length = 234 sequences # 1

consensusID : consensus_4568#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1662
fasta sequence

                              [CTTGTCCTCACGCAGAGAGTAGACTTGCACTGCTCTTTTATCTCTTTCTCTGGCCACCAAGCCGGTTGTTGTATATTACTAGTAGTAATCCGTCGCCGATAGCTGCTTCGTGTTGCTCGATCTTTGACCAGCCAGTGGGGTTGGAGGAGGGAGGGAGCTAGCTATAGTTGCTAGCGTGTTTACGTTTTTGCCGGCGAGGCGATCGACGGAGATGTTTGAGGGGTGCTACGGCGGAGTCGGGTCGGCGGCGGCGGCGGCGGCGCGGGACCCGAAGCCGCGGCTGCGGTGGACGCCGGACCTCCACGAGCGCTTCGTCGACGCCGTCACCAGGCTCGGCGGCCCGGACAAAGCAACACCCAAGTCGGTGCTCAGATTAATGGGCATGAAAGGCCTCACCCTGTACCATCTAAAAAGCCACCTCCAGAAATATAGACTGGGAAGGCAAAGCAAGAAATCAGCAGGCCTGGAGCTAGCAGTAGCAGATAGTGGTGGTATGTGCCTACCTTGAAATATTACTGTCATGACTCATGAGCAGAATCAAAAGTATCATGCCTTAAAGCTAAGATTTGTCCACACTTCCTACCTTTATTTTATCAGAATTTACAGCGGAAGGCATCAGTTTTTCTATCGGAGCGCCTCCAAGGAATCCTGCCGGAGGAAACAACACGGGGTAACTAGCAATTGCCCTTCTGCTTGTCCTCATAATGCACTACAATAGAATCATCATAGTCTATTACAGCTACAATGGTATATTTGTAATGGGATGTAAATCCTACTGAATGCCTTTTGTTATGTGATCTTTGGGGATTTTTAATTTCCTTCAGTGGAAGTTCTATGAGTGTCTGACTAACCATCTTTAGAACATTTCTCTTGTGAAGCAGAGAAATACCGCTTGCAGATGCGCTAAAGTATCAAGTCGAAGTCCAAAGAAAACTGCAAGAACAACTTGAGGTTCAAAAGAAGCTGCAGATGCGAATAGAAGCCCAAGGGAGGTATTTAAAGGAAATACTAGAGAAAGCTCAGAAAAACATTTCCCTGGATGTAAATGGGTCTGCTAACCTCTCATCAACCAGATCACAGATTACAGACATCAACCTAGCTCTTTCAGGTTTCATGGACAATGCAACACAAGTTCAGGAGGAAAACAATGAACTGATGAAACCTATATCTGATGACAACCTAAAAGTTAATAATTTGGGCTTTCAGCTCTACCATTTAGGAAGTCAGGAGAGTAAGGATGTTAAGTGCACTCCAAAAACTGAAGAGTTGCTTCTACTAGACTTGAATATTCAAGGAGGATATGAACTCTCTTCTAGAGGAATGCAAGGGTGTGAGTTGGATCTGAAGATCAACCAGCAGAGAAGATAGAGAGTTGTTTCACAAACCTAACAGTTTTGGAAAGTTGACCGTTCGCTATTAGTTTATTCTTTTTCCATGTGCCAGTGTTGAGCATGCTTGTGTTCACAAGTTTGTTTTTTCTGTCTGCTAATGTTAAATTTCCTGAAAGGAACTTCTGAATAAATATGGTATTATTTAGTTGTTTGAAGCTTCAATTGTATATACGAGTGAAGTGTGCAAAATGAGGGAACATCCAACACAGATGTGTATATTCTATCCAAGTATCCTATAAATTGATGTTTTACTTTTGTTCTTATTAAAAAA]

[+] EMBL AK106400             [CTTGTCCTCACGCAGAGAGTAGACTTGCACTGCTCTTTTATCTCTTTCTCTGGCCACCAAGCCGGTTGTTGTATATTACTAGTAGTAATCCGTCGCCGATAGCTGCTTCGTGTTGCTCGATCTTTGACCAGCCAGTGGGGTTGGAGGAGGGAGGGAGCTAGCTATAGTTGCTAGCGTGTTTACGTTTTTGCCGGCGAGGCGATCGACGGAGATGTTTGAGGGGTGCTACGGCGGAGTCGGGTCGGCGGCGGCGGCGGCGGCGCGGGACCCGAAGCCGCGGCTGCGGTGGACGCCGGACCTCCACGAGCGCTTCGTCGACGCCGTCACCAGGCTCGGCGGCCCGGACAAAGCAACACCCAAGTCGGTGCTCAGATTAATGGGCATGAAAGGCCTCACCCTGTACCATCTAAAAAGCCACCTCCAGAAATATAGACTGGGAAGGCAAAGCAAGAAATCAGCAGGCCTGGAGCTAGCAGTAGCAGATAGTGGTGGTATGTGCCTACCTTGAAATATTACTGTCATGACTCATGAGCAGAATCAAAAGTATCATGCCTTAAAGCTAAGATTTGTCCACACTTCCTACCTTTATTTTATCAGAATTTACAGCGGAAGGCATCAGTTTTTCTATCGGAGCGCCTCCAAGGAATCCTGCCGGAGGAAACAACACGGGGTAACTAGCAATTGCCCTTCTGCTTGTCCTCATAATGCACTACAATAGAATCATCATAGTCTATTACAGCTACAATGGTATATTTGTAATGGGATGTAAATCCTACTGAATGCCTTTTGTTATGTGATCTTTGGGGATTTTTAATTTCCTTCAGTGGAAGTTCTATGAGTGTCTGACTAACCATCTTTAGAACATTTCTCTTGTGAAGCAGAGAAATACCGCTTGCAGATGCGCTAAAGTATCAAGTCGAAGTCCAAAGAAAACTGCAAGAACAACTTGAGGTTCAAAAGAAGCTGCAGATGCGAATAGAAGCCCAAGGGAGGTATTTAAAGGAAATACTAGAGAAAGCTCAGAAAAACATTTCCCTGGATGTAAATGGGTCTGCTAACCTCTCATCAACCAGATCACAGATTACAGACATCAACCTAGCTCTTTCAGGTTTCATGGACAATGCAACACAAGTTCAGGAGGAAAACAATGAACTGATGAAACCTATATCTGATGACAACCTAAAAGTTAATAATTTGGGCTTTCAGCTCTACCATTTAGGAAGTCAGGAGAGTAAGGATGTTAAGTGCACTCCAAAAACTGAAGAGTTGCTTCTACTAGACTTGAATATTCAAGGAGGATATGAACTCTCTTCTAGAGGAATGCAAGGGTGTGAGTTGGATCTGAAGATCAACCAGCAGAGAAGATAGAGAGTTGTTTCACAAACCTAACAGTTTTGGAAAGTTGACCGTTCGCTATTAGTTTATTCTTTTTCCATGTGCCAGTGTTGAGCATGCTTGTGTTCACAAGTTTGTTTTTTCTGTCTGCTAATGTTAAATTTCCTGAAAGGAACTTCTGAATAAATATGGTATTATTTAGTTGTTTGAAGCTTCAATTGTATATACGAGTGAAGTGTGCAAAATGAGGGAACATCCAACACAGATGTGTATATTCTATCCAAGTATCCTATAAATTGATG                         ]
[+] EMBL AU222497             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GCAAGGGTGTGAGTTGGATNTGAAGATCAACCAGCAGAGAAGATAGAGAGTTGTTTCACAAACCTAACAGTTTTGGAAAGTTGACCGTTCGCTATTAGTTTATTCTTTTTCCATGTGCCAGTGTTGAGCATGCTTGTGTTCACAAGTTTGTTTTTTCTGTCTGCTAATGTTAAATTTCCTGAAAGGAACTTNTGAATAAATATGGTATTATTTAGTTATTTGAAGCTTCAATTGTATATACGAGTGAAGTGTGCAAAATGAGGGAACATCCAACACAGATGTGTATATTCTATCCAAGTATCCTATAAATTGATGTTTTACTTTTGTTCTTATTAAAAAA]




>consensus_4568#0
CTTGTCCTCACGCAGAGAGTAGACTTGCACTGCTCTTTTATCTCTTTCTCTGGCCACCAA
GCCGGTTGTTGTATATTACTAGTAGTAATCCGTCGCCGATAGCTGCTTCGTGTTGCTCGA
TCTTTGACCAGCCAGTGGGGTTGGAGGAGGGAGGGAGCTAGCTATAGTTGCTAGCGTGTT
TACGTTTTTGCCGGCGAGGCGATCGACGGAGATGTTTGAGGGGTGCTACGGCGGAGTCGG
GTCGGCGGCGGCGGCGGCGGCGCGGGACCCGAAGCCGCGGCTGCGGTGGACGCCGGACCT
CCACGAGCGCTTCGTCGACGCCGTCACCAGGCTCGGCGGCCCGGACAAAGCAACACCCAA
GTCGGTGCTCAGATTAATGGGCATGAAAGGCCTCACCCTGTACCATCTAAAAAGCCACCT
CCAGAAATATAGACTGGGAAGGCAAAGCAAGAAATCAGCAGGCCTGGAGCTAGCAGTAGC
AGATAGTGGTGGTATGTGCCTACCTTGAAATATTACTGTCATGACTCATGAGCAGAATCA
AAAGTATCATGCCTTAAAGCTAAGATTTGTCCACACTTCCTACCTTTATTTTATCAGAAT
TTACAGCGGAAGGCATCAGTTTTTCTATCGGAGCGCCTCCAAGGAATCCTGCCGGAGGAA
ACAACACGGGGTAACTAGCAATTGCCCTTCTGCTTGTCCTCATAATGCACTACAATAGAA
TCATCATAGTCTATTACAGCTACAATGGTATATTTGTAATGGGATGTAAATCCTACTGAA
TGCCTTTTGTTATGTGATCTTTGGGGATTTTTAATTTCCTTCAGTGGAAGTTCTATGAGT
GTCTGACTAACCATCTTTAGAACATTTCTCTTGTGAAGCAGAGAAATACCGCTTGCAGAT
GCGCTAAAGTATCAAGTCGAAGTCCAAAGAAAACTGCAAGAACAACTTGAGGTTCAAAAG
AAGCTGCAGATGCGAATAGAAGCCCAAGGGAGGTATTTAAAGGAAATACTAGAGAAAGCT
CAGAAAAACATTTCCCTGGATGTAAATGGGTCTGCTAACCTCTCATCAACCAGATCACAG
ATTACAGACATCAACCTAGCTCTTTCAGGTTTCATGGACAATGCAACACAAGTTCAGGAG
GAAAACAATGAACTGATGAAACCTATATCTGATGACAACCTAAAAGTTAATAATTTGGGC
TTTCAGCTCTACCATTTAGGAAGTCAGGAGAGTAAGGATGTTAAGTGCACTCCAAAAACT
GAAGAGTTGCTTCTACTAGACTTGAATATTCAAGGAGGATATGAACTCTCTTCTAGAGGA
ATGCAAGGGTGTGAGTTGGATCTGAAGATCAACCAGCAGAGAAGATAGAGAGTTGTTTCA
CAAACCTAACAGTTTTGGAAAGTTGACCGTTCGCTATTAGTTTATTCTTTTTCCATGTGC
CAGTGTTGAGCATGCTTGTGTTCACAAGTTTGTTTTTTCTGTCTGCTAATGTTAAATTTC
CTGAAAGGAACTTCTGAATAAATATGGTATTATTTAGTTGTTTGAAGCTTCAATTGTATA
TACGAGTGAAGTGTGCAAAATGAGGGAACATCCAACACAGATGTGTATATTCTATCCAAG
TATCCTATAAATTGATGTTTTACTTTTGTTCTTATTAAAAAA

consensusID : consensus_4568#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 234
fasta sequence

                              [ACGTAGCATGTAAGACTTNCACNGCTCTTTTATCTCTTTCTCTGGCCACCAAGCTGGTTGTTGTATATNACTAGTAGTAATCCGTCGCCGATAGCTGCTTCGTGTTGCTCGATCTTTGACCAGCCAGTNGGGTTGGAGGAGGGAGGGAGCTAGCTATAGTTGCNAGCGTGTTTACGTTTTTACCGGCGANGAGTCGACGGAGATNTTTGAGGGGTGCTACGGCGGAGTCNGGTC]

[+] EMBL C25910               [ACGTAGCATGTAAGACTTNCACNGCTCTTTTATCTCTTTCTCTGGCCACCAAGCTGGTTGTTGTATATNACTAGTAGTAATCCGTCGCCGATAGCTGCTTCGTGTTGCTCGATCTTTGACCAGCCAGTNGGGTTGGAGGAGGGAGGGAGCTAGCTATAGTTGCNAGCGTGTTTACGTTTTTACCGGCGANGAGTCGACGGAGATNTTTGAGGGGTGCTACGGCGGAGTCNGGTC]




>consensus_4568#1
ACGTAGCATGTAAGACTTNCACNGCTCTTTTATCTCTTTCTCTGGCCACCAAGCTGGTTG
TTGTATATNACTAGTAGTAATCCGTCGCCGATAGCTGCTTCGTGTTGCTCGATCTTTGAC
CAGCCAGTNGGGTTGGAGGAGGGAGGGAGCTAGCTATAGTTGCNAGCGTGTTTACGTTTT
TACCGGCGANGAGTCGACGGAGATNTTTGAGGGGTGCTACGGCGGAGTCNGGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4568#0      CTTGTCCTCACGCAGAGAGTA-GACTTGCACTGCTCTTTTATCTCTTTCTCTGGCCACCA 59
consensus_4568#1      ---------ACGTAGCATGTAAGACTTNCACNGCTCTTTTATCTCTTTCTCTGGCCACCA 51
                               *** **   *** ***** *** ****************************

consensus_4568#0      AGCCGGTTGTTGTATATTACTAGTAGTAATCCGTCGCCGATAGCTGCTTCGTGTTGCTCG 119
consensus_4568#1      AGCTGGTTGTTGTATATNACTAGTAGTAATCCGTCGCCGATAGCTGCTTCGTGTTGCTCG 111
                      *** ************* ******************************************

consensus_4568#0      ATCTTTGACCAGCCAGTGGGGTTGGAGGAGGGAGGGAGCTAGCTATAGTTGCTAGCGTGT 179
consensus_4568#1      ATCTTTGACCAGCCAGTNGGGTTGGAGGAGGGAGGGAGCTAGCTATAGTTGCNAGCGTGT 171
                      ***************** ********************************** *******

consensus_4568#0      TTACGTTTTTGCCGGCGAGGCGATCGACGGAGATGTTTGAGGGGTGCTACGGCGGAGTCG 239
consensus_4568#1      TTACGTTTTTACCGGCGANG-AGTCGACGGAGATNTTTGAGGGGTGCTACGGCGGAGTCN 230
                      ********** ******* *   *********** ************************ 

consensus_4568#0      GGTCGGCGGCGGCGGCGGCGGCGCGGGACCCGAAGCCGCGGCTGCGGTGGACGCCGGACC 299
consensus_4568#1      GGTC-------------------------------------------------------- 234
                      ****                                                        

consensus_4568#0      TCCACGAGCGCTTCGTCGACGCCGTCACCAGGCTCGGCGGCCCGGACAAAGCAACACCCA 359
consensus_4568#1      ------------------------------------------------------------
                                                                                  

consensus_4568#0      AGTCGGTGCTCAGATTAATGGGCATGAAAGGCCTCACCCTGTACCATCTAAAAAGCCACC 419
consensus_4568#1      ------------------------------------------------------------
                                                                                  

consensus_4568#0      TCCAGAAATATAGACTGGGAAGGCAAAGCAAGAAATCAGCAGGCCTGGAGCTAGCAGTAG 479
consensus_4568#1      ------------------------------------------------------------
                                                                                  

consensus_4568#0      CAGATAGTGGTGGTATGTGCCTACCTTGAAATATTACTGTCATGACTCATGAGCAGAATC 539
consensus_4568#1      ------------------------------------------------------------
                                                                                  

consensus_4568#0      AAAAGTATCATGCCTTAAAGCTAAGATTTGTCCACACTTCCTACCTTTATTTTATCAGAA 599
consensus_4568#1      ------------------------------------------------------------
                                                                                  

consensus_4568#0      TTTACAGCGGAAGGCATCAGTTTTTCTATCGGAGCGCCTCCAAGGAATCCTGCCGGAGGA 659
consensus_4568#1      ------------------------------------------------------------
                                                                                  

consensus_4568#0      AACAACACGGGGTAACTAGCAATTGCCCTTCTGCTTGTCCTCATAATGCACTACAATAGA 719
consensus_4568#1      ------------------------------------------------------------
                                                                                  

consensus_4568#0      ATCATCATAGTCTATTACAGCTACAATGGTATATTTGTAATGGGATGTAAATCCTACTGA 779
consensus_4568#1      ------------------------------------------------------------
                                                                                  

consensus_4568#0      ATGCCTTTTGTTATGTGATCTTTGGGGATTTTTAATTTCCTTCAGTGGAAGTTCTATGAG 839
consensus_4568#1      ------------------------------------------------------------
                                                                                  

consensus_4568#0      TGTCTGACTAACCATCTTTAGAACATTTCTCTTGTGAAGCAGAGAAATACCGCTTGCAGA 899
consensus_4568#1      ------------------------------------------------------------
                                                                                  

consensus_4568#0      TGCGCTAAAGTATCAAGTCGAAGTCCAAAGAAAACTGCAAGAACAACTTGAGGTTCAAAA 959
consensus_4568#1      ------------------------------------------------------------
                                                                                  

consensus_4568#0      GAAGCTGCAGATGCGAATAGAAGCCCAAGGGAGGTATTTAAAGGAAATACTAGAGAAAGC 1019
consensus_4568#1      ------------------------------------------------------------
                                                                                  

consensus_4568#0      TCAGAAAAACATTTCCCTGGATGTAAATGGGTCTGCTAACCTCTCATCAACCAGATCACA 1079
consensus_4568#1      ------------------------------------------------------------
                                                                                  

consensus_4568#0      GATTACAGACATCAACCTAGCTCTTTCAGGTTTCATGGACAATGCAACACAAGTTCAGGA 1139
consensus_4568#1      ------------------------------------------------------------
                                                                                  

consensus_4568#0      GGAAAACAATGAACTGATGAAACCTATATCTGATGACAACCTAAAAGTTAATAATTTGGG 1199
consensus_4568#1      ------------------------------------------------------------
                                                                                  

consensus_4568#0      CTTTCAGCTCTACCATTTAGGAAGTCAGGAGAGTAAGGATGTTAAGTGCACTCCAAAAAC 1259
consensus_4568#1      ------------------------------------------------------------
                                                                                  

consensus_4568#0      TGAAGAGTTGCTTCTACTAGACTTGAATATTCAAGGAGGATATGAACTCTCTTCTAGAGG 1319
consensus_4568#1      ------------------------------------------------------------
                                                                                  

consensus_4568#0      AATGCAAGGGTGTGAGTTGGATCTGAAGATCAACCAGCAGAGAAGATAGAGAGTTGTTTC 1379
consensus_4568#1      ------------------------------------------------------------
                                                                                  

consensus_4568#0      ACAAACCTAACAGTTTTGGAAAGTTGACCGTTCGCTATTAGTTTATTCTTTTTCCATGTG 1439
consensus_4568#1      ------------------------------------------------------------
                                                                                  

consensus_4568#0      CCAGTGTTGAGCATGCTTGTGTTCACAAGTTTGTTTTTTCTGTCTGCTAATGTTAAATTT 1499
consensus_4568#1      ------------------------------------------------------------
                                                                                  

consensus_4568#0      CCTGAAAGGAACTTCTGAATAAATATGGTATTATTTAGTTGTTTGAAGCTTCAATTGTAT 1559
consensus_4568#1      ------------------------------------------------------------
                                                                                  

consensus_4568#0      ATACGAGTGAAGTGTGCAAAATGAGGGAACATCCAACACAGATGTGTATATTCTATCCAA 1619
consensus_4568#1      ------------------------------------------------------------
                                                                                  

consensus_4568#0      GTATCCTATAAATTGATGTTTTACTTTTGTTCTTATTAAAAAA 1662
consensus_4568#1      -------------------------------------------