cluster # 4569

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Oryza sativa
cluster # 4569 cluster # 4569 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4569#0 length = 1027 sequences # 1

consensus_4569#1 length = 410 sequences # 1
consensus_4569#2 length = 91 sequences # 1

consensusID : consensus_4569#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1027
fasta sequence

                              [AGGACCTGCGCCTTGAAGGCGTCCACGTGCGCCGGGTCGATGGACACCGAGAGCTGCACCTCGCCGTCGCGCCGGCCGCCGACGAGCACCATCTCGCCGTCGTGGTTCATCGACACGAGCTCGACGCGCGCCGGCCTCCCGAACCCGAAGTCGGCGGCGCCGTACGCCCCGAACCGTGGGCTCGCCGCCACGTTCGCCATGCGGGAGAAGGGGATCTGCATCACCCGCGCGATCGCCGACCCGTCCGCCGTCCCGGCGAGCGGCGCCGCCTCCATCTCCGCCACCGCCGCCTGAACCGCCCGCGCCGCGCGCAGCAGCCCGCGCTCGCCGCGGAGCTCCGCCGCGTTGGCGCAGCGCGCCAGGCACATCCTCACGCAGTTCCCGAGGTACCCCTCGCCGACGGCGGGGTCGAGCCGCGCCCGGAGGTCGGCGAGGAAGATCAGGTACGTGTCGTCCCCGTCGGCGAGCGCCTTGGACCGGACGAACGCCGCCCACCCCATCGCCGCCAGCGCCACGAACGTCGACACCGGCTTGGCGGCGCCGCCGCCATCGGCAGCCTCCTCCGCCGAGGCGAGCTCGTCGATGCGCCGCTTCAACGCGCGGATGGCGTCGGCGCCGAGGCGGAACGTCCGGCGAGCCAGCCGGAATCGCTGGCTGAAGTCCTGCTGATCCCCGCTCGCCTGCAAGCATCCATGGCGGGTGGTGGTGATCTCGTCAGTAAATTTGCATTCACGGCGAGCGAGAGAGAGATCATGACGCGTGCATGCCATTGCTTGCTCCGCCACGCCACCGCGGCGAGCTCCGCATGCGCTTAACATTGGGGGGAGAAGGAAACCATGGTTGGATGGCGTACCAAGCAAAGGTTGACGACACATACACACTTCGAAGAGGCTACACTACACTACAGTACATGCTTCATGCATGATGGAAGCTTCGATTTTTGTTTATTTATTTGAACTACCAGAAAGATTTTTTGGGCTGTTTTTTTTATTTGGTTGAATTTTATTCAGAATTCAAATACATTACA]

[+] EMBL AK108243             [AGGACCTGCGCCTTGAAGGCGTCCACGTGCGCCGGGTCGATGGACACCGAGAGCTGCACCTCGCCGTCGCGCCGGCCGCCGACGAGCACCATCTCGCCGTCGTGGTTCATCGACACGAGCTCGACGCGCGCCGGCCTCCCGAACCCGAAGTCGGCGGCGCCGTACGCCCCGAACCGTGGGCTCGCCGCCACGTTCGCCATGCGGGAGAAGGGGATCTGCATCACCCGCGCGATCGCCGACCCGTCCGCCGTCCCGGCGAGCGGCGCCGCCTCCATCTCCGCCACCGCCGCCTGAACCGCCCGCGCCGCGCGCAGCAGCCCGCGCTCGCCGCGGAGCTCCGCCGCGTTGGCGCAGCGCGCCAGGCACATCCTCACGCAGTTCCCGAGGTACCCCTCGCCGACGGCGGGGTCGAGCCGCGCCCGGAGGTCGGCGAGGAAGATCAGGTACGTGTCGTCCCCGTCGGCGAGCGCCTTGGACCGGACGAACGCCGCCCACCCCATCGCCGCCAGCGCCACGAACGTCGACACCGGCTTGGCGGCGCCGCCGCCATCGGCAGCCTCCTCCGCCGAGGCGAGCTCGTCGATGCGCCGCTTCAACGCGCGGATGGCGTCGGCGCCGAGGCGGAACGTCCGGCGAGCCAGCCGGAATCGCTGGCTGAAGTCCTGCTGATCCCCGCTCGCCTGCAAGCATCCATGGCGGGTGGTGGTGATCTCGTCAGTAAATTTGCATTCACGGCGAGCGAGAGAGAGATCATGACGCGTGCATGCCATTGCTTGCTCCGCCACGCCACCGCGGCGAGCTCCGCATGCGCTTAACATTGGGGGGAGAAGGAAACCATGGTTGGATGGCGTACCAAGCAAAGGTTGACGACACATACACACTTCGAAGAGGCTACACTACACTACAGTACATGCTTCATGCATGATGGAAGCTTCGATTTTTGTTTATTTATTTGAACTACCAGAAAGATTTTTTGGGCTGTTTTTTTTATTTGGTTGAATTTTATTCAGAATTCAAATACATTACA]




>consensus_4569#0
AGGACCTGCGCCTTGAAGGCGTCCACGTGCGCCGGGTCGATGGACACCGAGAGCTGCACC
TCGCCGTCGCGCCGGCCGCCGACGAGCACCATCTCGCCGTCGTGGTTCATCGACACGAGC
TCGACGCGCGCCGGCCTCCCGAACCCGAAGTCGGCGGCGCCGTACGCCCCGAACCGTGGG
CTCGCCGCCACGTTCGCCATGCGGGAGAAGGGGATCTGCATCACCCGCGCGATCGCCGAC
CCGTCCGCCGTCCCGGCGAGCGGCGCCGCCTCCATCTCCGCCACCGCCGCCTGAACCGCC
CGCGCCGCGCGCAGCAGCCCGCGCTCGCCGCGGAGCTCCGCCGCGTTGGCGCAGCGCGCC
AGGCACATCCTCACGCAGTTCCCGAGGTACCCCTCGCCGACGGCGGGGTCGAGCCGCGCC
CGGAGGTCGGCGAGGAAGATCAGGTACGTGTCGTCCCCGTCGGCGAGCGCCTTGGACCGG
ACGAACGCCGCCCACCCCATCGCCGCCAGCGCCACGAACGTCGACACCGGCTTGGCGGCG
CCGCCGCCATCGGCAGCCTCCTCCGCCGAGGCGAGCTCGTCGATGCGCCGCTTCAACGCG
CGGATGGCGTCGGCGCCGAGGCGGAACGTCCGGCGAGCCAGCCGGAATCGCTGGCTGAAG
TCCTGCTGATCCCCGCTCGCCTGCAAGCATCCATGGCGGGTGGTGGTGATCTCGTCAGTA
AATTTGCATTCACGGCGAGCGAGAGAGAGATCATGACGCGTGCATGCCATTGCTTGCTCC
GCCACGCCACCGCGGCGAGCTCCGCATGCGCTTAACATTGGGGGGAGAAGGAAACCATGG
TTGGATGGCGTACCAAGCAAAGGTTGACGACACATACACACTTCGAAGAGGCTACACTAC
ACTACAGTACATGCTTCATGCATGATGGAAGCTTCGATTTTTGTTTATTTATTTGAACTA
CCAGAAAGATTTTTTGGGCTGTTTTTTTTATTTGGTTGAATTTTATTCAGAATTCAAATA
CATTACA

consensusID : consensus_4569#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 410
fasta sequence

                              [TTTTTTTTGGAGTAGAAAAAACTATTACTTTGCTGTTTAACTTTGATTTCTGACACTAACATCAGAAGCTTGATTACAAGACAGGCAAAAATACAAATAANANTATNATTATTATTATTAACTAATTAANNGATAGNGCCAAANGGTACTCCTANGGCACTGAGNAGCATCAGCTAGCCGAGGACCTGCGCCTTGAAGGCGNCCACGTGCGCCGGGTCGATGGACACCGAGAGCTGCACCTCGCCGTCGCGCCGGCCGCCGACGAGCACCATCTCGCCGNCGNGGNTCATCGACACGAGCTCGACGCGCGCCGGCCTCCCGAACCCGAAGCCGGANGNGCCNGACGCCCNNGNAACGCGNTCNCNGAGNCAGCGCGTGCTNNGCCGNGANGANTGNGAATGGCGNNNCCG]

[-] EMBL AT003518             [TTTTTTTTGGAGTAGAAAAAACTATTACTTTGCTGTTTAACTTTGATTTCTGACACTAACATCAGAAGCTTGATTACAAGACAGGCAAAAATACAAATAANANTATNATTATTATTATTAACTAATTAANNGATAGNGCCAAANGGTACTCCTANGGCACTGAGNAGCATCAGCTAGCCGAGGACCTGCGCCTTGAAGGCGNCCACGTGCGCCGGGTCGATGGACACCGAGAGCTGCACCTCGCCGTCGCGCCGGCCGCCGACGAGCACCATCTCGCCGNCGNGGNTCATCGACACGAGCTCGACGCGCGCCGGCCTCCCGAACCCGAAGCCGGANGNGCCNGACGCCCNNGNAACGCGNTCNCNGAGNCAGCGCGTGCTNNGCCGNGANGANTGNGAATGGCGNNNCCG]




>consensus_4569#1
TTTTTTTTGGAGTAGAAAAAACTATTACTTTGCTGTTTAACTTTGATTTCTGACACTAAC
ATCAGAAGCTTGATTACAAGACAGGCAAAAATACAAATAANANTATNATTATTATTATTA
ACTAATTAANNGATAGNGCCAAANGGTACTCCTANGGCACTGAGNAGCATCAGCTAGCCG
AGGACCTGCGCCTTGAAGGCGNCCACGTGCGCCGGGTCGATGGACACCGAGAGCTGCACC
TCGCCGTCGCGCCGGCCGCCGACGAGCACCATCTCGCCGNCGNGGNTCATCGACACGAGC
TCGACGCGCGCCGGCCTCCCGAACCCGAAGCCGGANGNGCCNGACGCCCNNGNAACGCGN
TCNCNGAGNCAGCGCGTGCTNNGCCGNGANGANTGNGAATGGCGNNNCCG

consensusID : consensus_4569#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 91
fasta sequence

                              [TATTTGTATTTNTGCCTGTCTTGTAATCAAACTTCTGATGTTAGTGTCAGNAATNNNAGTTANACAGCAAAGTNATNGTTTTTTCTAANAA]

[+] EMBL AU091888             [TATTTGTATTTNTGCCTGTCTTGTAATCAAACTTCTGATGTTAGTGTCAGNAATNNNAGTTANACAGCAAAGTNATNGTTTTTTCTAANAA]




>consensus_4569#2
TATTTGTATTTNTGCCTGTCTTGTAATCAAACTTCTGATGTTAGTGTCAGNAATNNNAGT
TANACAGCAAAGTNATNGTTTTTTCTAANAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4569#0      AGGACCTGCGCCTTGAAGGCGTCCACGTGCGCCGGGTCGATGGACACCGAGAGCTGC-AC 59
consensus_4569#1      --------------------------------TTTTTTTTGGAGTAGAAAAAACTATTAC 28
consensus_4569#2      ------------------------------------------------------------
                                                                                  

consensus_4569#0      CTCGCCGTC--GCGCCGGCCGCCGACGAGCACCATCTCGCCGTCG--TGGTTCATCGACA 115
consensus_4569#1      TTTGCTGTTTAACTTTGATTTCTGAC-ACTAACATCAGAAGCTTGATTACAAGACAGGCA 87
consensus_4569#2      ------------------------------------------------------------
                                                                                  

consensus_4569#0      CGAGCTCGACGCGCGCCGGCCTCCCGAACCCGAAGTCGGCGGCGCCGTACGCCCCGAACC 175
consensus_4569#1      AAAATACAAATAANANTATNATTATTATTATTAACTAATTAAN--NGATAGNGCCAAANG 145
consensus_4569#2      ------------------------------------------------------------
                                                                                  

consensus_4569#0      GTGGGCTCGCCGCCACGTTCGCCATGCGGGAGAAGGGGATCTGCATCACCCGCGCGATCG 235
consensus_4569#1      GTACTCCTANGGCACTGAGNAGCATCAGCTAGCCGAGGACCTGCGCCTTGAAGGCGNCCA 205
consensus_4569#2      ------------------------------------------------------------
                                                                                  

consensus_4569#0      CCGACCCGTCCGCCGTCCCGGCGAGCGGCGCCGCCTCCATCTCCGCCACCGCCGCCTGAA 295
consensus_4569#1      C------GTGCGCCGGGTCGATGGACACCGAGAGCTGCACCTC----GCCGTCGC----G 251
consensus_4569#2      ------------------------------------------------------------
                                                                                  

consensus_4569#0      CCGCCCGCGCCGCGCGCAGCAGCCCGCGCTCGCCGCGGAGCTCCGCCGCGTTGGCGCAGC 355
consensus_4569#1      CCGGCCGC-CGACGAGCACCATCTCGC---CGNCGNGGNTCATCGACACGAGCTCGACGC 307
consensus_4569#2      ------------------------------------------------------------
                                                                                  

consensus_4569#0      GCGCCAGGCACATCCTCACGCAGTTCCCGAGGTACCCCTCGCCGACGG--CGGGGTCG-A 412
consensus_4569#1      GCGCCGGCCTC--CCGAACCCGAAGCCGGANGNGCCNGACGCCCNNGNAACGCGNTCNCN 365
consensus_4569#2      -----------------------TATTTGTATTTNTGCCTGTCTTGTAATCAAACTTCTG 37
                                                  *           * *       *    *    

consensus_4569#0      GCCGCGCCCGGAGGTCGGCGAGGAAGATCAGGTACGTGTCGTCCCCGTCGGCGAGCGCCT 472
consensus_4569#1      GAGNCAGCGCGTGCTNNGCCGNGANGANTGNGAA--TGGCGNNNCCG------------- 410
consensus_4569#2      ATGTTAGTGTCAGNAATNNNAGTTANACAGCAAAGTNATNGTTTTTTCTAANAA------ 91
                                  *             *      *      *                   

consensus_4569#0      TGGACCGGACGAACGCCGCCCACCCCATCGCCGCCAGCGCCACGAACGTCGACACCGGCT 532
consensus_4569#1      ------------------------------------------------------------
consensus_4569#2      ------------------------------------------------------------
                                                                                  

consensus_4569#0      TGGCGGCGCCGCCGCCATCGGCAGCCTCCTCCGCCGAGGCGAGCTCGTCGATGCGCCGCT 592
consensus_4569#1      ------------------------------------------------------------
consensus_4569#2      ------------------------------------------------------------
                                                                                  

consensus_4569#0      TCAACGCGCGGATGGCGTCGGCGCCGAGGCGGAACGTCCGGCGAGCCAGCCGGAATCGCT 652
consensus_4569#1      ------------------------------------------------------------
consensus_4569#2      ------------------------------------------------------------
                                                                                  

consensus_4569#0      GGCTGAAGTCCTGCTGATCCCCGCTCGCCTGCAAGCATCCATGGCGGGTGGTGGTGATCT 712
consensus_4569#1      ------------------------------------------------------------
consensus_4569#2      ------------------------------------------------------------
                                                                                  

consensus_4569#0      CGTCAGTAAATTTGCATTCACGGCGAGCGAGAGAGAGATCATGACGCGTGCATGCCATTG 772
consensus_4569#1      ------------------------------------------------------------
consensus_4569#2      ------------------------------------------------------------
                                                                                  

consensus_4569#0      CTTGCTCCGCCACGCCACCGCGGCGAGCTCCGCATGCGCTTAACATTGGGGGGAGAAGGA 832
consensus_4569#1      ------------------------------------------------------------
consensus_4569#2      ------------------------------------------------------------
                                                                                  

consensus_4569#0      AACCATGGTTGGATGGCGTACCAAGCAAAGGTTGACGACACATACACACTTCGAAGAGGC 892
consensus_4569#1      ------------------------------------------------------------
consensus_4569#2      ------------------------------------------------------------
                                                                                  

consensus_4569#0      TACACTACACTACAGTACATGCTTCATGCATGATGGAAGCTTCGATTTTTGTTTATTTAT 952
consensus_4569#1      ------------------------------------------------------------
consensus_4569#2      ------------------------------------------------------------
                                                                                  

consensus_4569#0      TTGAACTACCAGAAAGATTTTTTGGGCTGTTTTTTTTATTTGGTTGAATTTTATTCAGAA 1012
consensus_4569#1      ------------------------------------------------------------
consensus_4569#2      ------------------------------------------------------------
                                                                                  

consensus_4569#0      TTCAAATACATTACA 1027
consensus_4569#1      ---------------
consensus_4569#2      ---------------