These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4570#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 699 fasta sequence [CTCCTGCAGCCTCTCCACCTCCTGTCCTCCTCCAGCCTCTCCTCCTCCTCCTGTTGGCGTAGGAAACCACGGCGGATTAGCGACGGTGACGACGGCGACCGGGAGGGGCGCCGTGATCCACGGCCGGGAAGGGCACGGGCACGGGTGCAGGCGTGGTGGATCCGGCCACCGCAGAGCCGCGGGGGGCGGATCTGGCCGCCGGAGGGCCACGGGGAGCGGATCCGAGCGCGGGCGGCGGCGCGCGGCTGATCTGGGCACGGGCGGCTGCTCTCGGACGCCGGCGGCGGTGCGCGGCGGATCCAGGCGCTAGCGGGGAGGCTAGATCCGCCGCCGCCAGATCGGCGGCGCCTGGCCGGTGGTCACCGGGGAGCTGCATGCTAGCTGCAGAGAGGAGGCACGACCGCACGAGAGGATCCTCTCTTCAGTTCATGCGTTTGGTTCTGATCTGTTTGCACGTGAAACCATTTCTGCAGCGGGCTGCGGTGGAGGCTGCGGCGGGGCTCTGTGCAGCGGTGGTGGAGGCCGGCGGGGCTCGGCGGCGGCGTCGTCGAGGCAGAGGCAGTGGAGGCTTGAATGCTTGAACTTTTTTGATGCTTGAATGCTTGGGGGAATAGAAATTTTTGACTGTAAATTTAAATTGTGCTTGTGTGAATTGAATTTTTTGACTATAATTTTTGGTTGGGTGAATGGAAATTTCTG] [+] EMBL C74709 [CTCCTGCAGCCTCTCCACCTCCTGTCCTCCTCCAGCCTCTCCTCCTCCTCCTGTTGGCGTAGGAAACCACGGCGGATTAGCGACGGTGACGACGGCGACCGGGAGGGGCGCCGTGATCCACGGCCGGGAAGGGCACGGGCACGGGTGCAGGCGTGGTGGATCCGGCCACCGCAGAGCCGCGGGGGGCGGATCTGGCCGCCGGAGGGCCACGGGGAGCGG ] [+] EMBL AK109219 [ CTGCAGCCTCTCCACCTCCTGTCCTCCTCCAGCCTCTCCTCCTCCTCCTGTTGGCGTAGGAAACCACGGCGGATTAGCGACGGTGACGACGGCGACCGGGAGGGGCGCCGTGATCCACGGCCGGGAAGGGCACGGGCACGGGTGCAGGCGTGGTGGATCCGGCCACCGCAGAGCCGCGGGGGGCGGATCTGGCCGCCGGAGGGCCACGGGGAGCGGATCCGAGCGCGGGCGGCGGCGCGCGGCTGATCTGGGCACGGGCGGCTGCTCTCGGACGCCGGCGGCGGTGCGCGGCGGATCCAGGCGCTAGCGGGGAGGCTAGATCCGCCGCCGCCAGATCGGCGGCGCCTGGCCGGTGGTCACCGGGGAGCTGCATGCTAGCTGCAGAGAGGAGGCACGACCGCACGAGAGGATCCTCTCTTCAGTTCATGCGTTTGGTTCTGATCTGTTTGCACGTGAAACCATTTCTGCAGCGGGCTGCGGTGGAGGCTGCGGCGGGGCTCTGTGCAGCGGTGGTGGAGGCCGGCGGGGCTCGGCGGCGGCGTCGTCGAGGCAGAGGCAGTGGAGGCTTGAATGCTTGAACTTTTTTGATGCTTGAATGCTTGGGGGAATAGAAATTTTTGACTGTAAATTTAAATTGTGCTTGTGTGAATTGAATTTTTTGACTATAATTTTTGGTTGGGTGAATGGAAATTTCTG] consensusID : consensus_4570#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 177 fasta sequence [CACGAGGACACTGACATGGACTGACGGAGTAGAAATTTTTGACTGTAAATTTAAATTGTGCTTGTGTGAATTGAATTTTTTGACTGTAATTTCTGCTTGGGTGAATGGAAATTTCTGTGGATTTTTGAAAAAAAAAAAAAAAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF317888 [CACGAGGACACTGACATGGACTGACGGAGTAGAAATTTTTGACTGTAAATTTAAATTGTGCTTGTGTGAATTGAATTTTTTGACTGTAATTTCTGCTTGGGTGAATGGAAATTTCTGTGGATTTTTGAAAAAAAAAAAAAAAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4570#0 CTCCTGCAGCCTCTCCACCTCCTGTCCTCCTCCAGCCTCTCCTCCTCCTCCTGTTGGCGT 60 consensus_4570#1 ------------------------------------------------------------ consensus_4570#0 AGGAAACCACGGCGGATTAGCGACGGTGACGACGGCGACCGGGAGGGGCGCCGTGATCCA 120 consensus_4570#1 ------------------------------------------------------------ consensus_4570#0 CGGCCGGGAAGGGCACGGGCACGGGTGCAGGCGTGGTGGATCCGGCCACCGCAGAGCCGC 180 consensus_4570#1 ------------------------------------------------------------ consensus_4570#0 GGGGGGCGGATCTGGCCGCCGGAGGGCCACGGGGAGCGGATCCGAGCGCGGGCGGCGGCG 240 consensus_4570#1 ------------------------------------------------------------ consensus_4570#0 CGCGGCTGATCTGGGCACGGGCGGCTGCTCTCGGACGCCGGCGGCGGTGCGCGGCGGATC 300 consensus_4570#1 ------------------------------------------------------------ consensus_4570#0 CAGGCGCTAGCGGGGAGGCTAGATCCGCCGCCGCCAGATCGGCGGCGCCTGGCCGGTGGT 360 consensus_4570#1 ------------------------------------------------------------ consensus_4570#0 CACCGGGGAGCTGCATGCTAGCTGCAGAGAGGAGGCACGACCGCACGAGAGGATCCTCTC 420 consensus_4570#1 ------------------------------------------------------------ consensus_4570#0 TTCAGTTCATGCGTTTGGTTCTGATCTGTTTGCACGTGAAACCATTTCTGCAGCGGGCTG 480 consensus_4570#1 ------------------------------------------------------------ consensus_4570#0 CGGTGGAGGCTGCGGCGGGGCTCTGTGCAGCGGTGGTGGAGGCCGGCGGGGCTCGGCGGC 540 consensus_4570#1 ------------------------------------------------------------ consensus_4570#0 GGCGTCGTCGAGGCAGAGGCAGTGGAGGCTTGAATGCTTGAACTTTTTTGATGCTTGAAT 600 consensus_4570#1 -------------------------------------------CACGAGGACACTGACAT 17 ** ** ** consensus_4570#0 GC-TTGGGGGAATAGAAATTTTTGACTGTAAATTTAAATTGTGCTTGTGTGAATTGAATT 659 consensus_4570#1 GGACTGACGGAGTAGAAATTTTTGACTGTAAATTTAAATTGTGCTTGTGTGAATTGAATT 77 * ** *** ************************************************ consensus_4570#0 TTTTGACTATAATTTTTGGTTGGGTGAATGGAAATTTCTG-------------------- 699 consensus_4570#1 TTTTGACTGTAATTTCTGCTTGGGTGAATGGAAATTTCTGTGGATTTTTGAAAAAAAAAA 137 ******** ****** ** ********************* consensus_4570#0 ---------------------------------------- consensus_4570#1 AAAAAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 177 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||