cluster # 4570

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Oryza sativa
cluster # 4570 cluster # 4570 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4570#0 length = 699 sequences # 2

consensus_4570#1 length = 177 sequences # 1

consensusID : consensus_4570#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 699
fasta sequence

                              [CTCCTGCAGCCTCTCCACCTCCTGTCCTCCTCCAGCCTCTCCTCCTCCTCCTGTTGGCGTAGGAAACCACGGCGGATTAGCGACGGTGACGACGGCGACCGGGAGGGGCGCCGTGATCCACGGCCGGGAAGGGCACGGGCACGGGTGCAGGCGTGGTGGATCCGGCCACCGCAGAGCCGCGGGGGGCGGATCTGGCCGCCGGAGGGCCACGGGGAGCGGATCCGAGCGCGGGCGGCGGCGCGCGGCTGATCTGGGCACGGGCGGCTGCTCTCGGACGCCGGCGGCGGTGCGCGGCGGATCCAGGCGCTAGCGGGGAGGCTAGATCCGCCGCCGCCAGATCGGCGGCGCCTGGCCGGTGGTCACCGGGGAGCTGCATGCTAGCTGCAGAGAGGAGGCACGACCGCACGAGAGGATCCTCTCTTCAGTTCATGCGTTTGGTTCTGATCTGTTTGCACGTGAAACCATTTCTGCAGCGGGCTGCGGTGGAGGCTGCGGCGGGGCTCTGTGCAGCGGTGGTGGAGGCCGGCGGGGCTCGGCGGCGGCGTCGTCGAGGCAGAGGCAGTGGAGGCTTGAATGCTTGAACTTTTTTGATGCTTGAATGCTTGGGGGAATAGAAATTTTTGACTGTAAATTTAAATTGTGCTTGTGTGAATTGAATTTTTTGACTATAATTTTTGGTTGGGTGAATGGAAATTTCTG]

[+] EMBL C74709               [CTCCTGCAGCCTCTCCACCTCCTGTCCTCCTCCAGCCTCTCCTCCTCCTCCTGTTGGCGTAGGAAACCACGGCGGATTAGCGACGGTGACGACGGCGACCGGGAGGGGCGCCGTGATCCACGGCCGGGAAGGGCACGGGCACGGGTGCAGGCGTGGTGGATCCGGCCACCGCAGAGCCGCGGGGGGCGGATCTGGCCGCCGGAGGGCCACGGGGAGCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AK109219             [   CTGCAGCCTCTCCACCTCCTGTCCTCCTCCAGCCTCTCCTCCTCCTCCTGTTGGCGTAGGAAACCACGGCGGATTAGCGACGGTGACGACGGCGACCGGGAGGGGCGCCGTGATCCACGGCCGGGAAGGGCACGGGCACGGGTGCAGGCGTGGTGGATCCGGCCACCGCAGAGCCGCGGGGGGCGGATCTGGCCGCCGGAGGGCCACGGGGAGCGGATCCGAGCGCGGGCGGCGGCGCGCGGCTGATCTGGGCACGGGCGGCTGCTCTCGGACGCCGGCGGCGGTGCGCGGCGGATCCAGGCGCTAGCGGGGAGGCTAGATCCGCCGCCGCCAGATCGGCGGCGCCTGGCCGGTGGTCACCGGGGAGCTGCATGCTAGCTGCAGAGAGGAGGCACGACCGCACGAGAGGATCCTCTCTTCAGTTCATGCGTTTGGTTCTGATCTGTTTGCACGTGAAACCATTTCTGCAGCGGGCTGCGGTGGAGGCTGCGGCGGGGCTCTGTGCAGCGGTGGTGGAGGCCGGCGGGGCTCGGCGGCGGCGTCGTCGAGGCAGAGGCAGTGGAGGCTTGAATGCTTGAACTTTTTTGATGCTTGAATGCTTGGGGGAATAGAAATTTTTGACTGTAAATTTAAATTGTGCTTGTGTGAATTGAATTTTTTGACTATAATTTTTGGTTGGGTGAATGGAAATTTCTG]




>consensus_4570#0
CTCCTGCAGCCTCTCCACCTCCTGTCCTCCTCCAGCCTCTCCTCCTCCTCCTGTTGGCGT
AGGAAACCACGGCGGATTAGCGACGGTGACGACGGCGACCGGGAGGGGCGCCGTGATCCA
CGGCCGGGAAGGGCACGGGCACGGGTGCAGGCGTGGTGGATCCGGCCACCGCAGAGCCGC
GGGGGGCGGATCTGGCCGCCGGAGGGCCACGGGGAGCGGATCCGAGCGCGGGCGGCGGCG
CGCGGCTGATCTGGGCACGGGCGGCTGCTCTCGGACGCCGGCGGCGGTGCGCGGCGGATC
CAGGCGCTAGCGGGGAGGCTAGATCCGCCGCCGCCAGATCGGCGGCGCCTGGCCGGTGGT
CACCGGGGAGCTGCATGCTAGCTGCAGAGAGGAGGCACGACCGCACGAGAGGATCCTCTC
TTCAGTTCATGCGTTTGGTTCTGATCTGTTTGCACGTGAAACCATTTCTGCAGCGGGCTG
CGGTGGAGGCTGCGGCGGGGCTCTGTGCAGCGGTGGTGGAGGCCGGCGGGGCTCGGCGGC
GGCGTCGTCGAGGCAGAGGCAGTGGAGGCTTGAATGCTTGAACTTTTTTGATGCTTGAAT
GCTTGGGGGAATAGAAATTTTTGACTGTAAATTTAAATTGTGCTTGTGTGAATTGAATTT
TTTGACTATAATTTTTGGTTGGGTGAATGGAAATTTCTG

consensusID : consensus_4570#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 177
fasta sequence

                              [CACGAGGACACTGACATGGACTGACGGAGTAGAAATTTTTGACTGTAAATTTAAATTGTGCTTGTGTGAATTGAATTTTTTGACTGTAATTTCTGCTTGGGTGAATGGAAATTTCTGTGGATTTTTGAAAAAAAAAAAAAAAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF317888             [CACGAGGACACTGACATGGACTGACGGAGTAGAAATTTTTGACTGTAAATTTAAATTGTGCTTGTGTGAATTGAATTTTTTGACTGTAATTTCTGCTTGGGTGAATGGAAATTTCTGTGGATTTTTGAAAAAAAAAAAAAAAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_4570#1
CACGAGGACACTGACATGGACTGACGGAGTAGAAATTTTTGACTGTAAATTTAAATTGTG
CTTGTGTGAATTGAATTTTTTGACTGTAATTTCTGCTTGGGTGAATGGAAATTTCTGTGG
ATTTTTGAAAAAAAAAAAAAAAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4570#0      CTCCTGCAGCCTCTCCACCTCCTGTCCTCCTCCAGCCTCTCCTCCTCCTCCTGTTGGCGT 60
consensus_4570#1      ------------------------------------------------------------
                                                                                  

consensus_4570#0      AGGAAACCACGGCGGATTAGCGACGGTGACGACGGCGACCGGGAGGGGCGCCGTGATCCA 120
consensus_4570#1      ------------------------------------------------------------
                                                                                  

consensus_4570#0      CGGCCGGGAAGGGCACGGGCACGGGTGCAGGCGTGGTGGATCCGGCCACCGCAGAGCCGC 180
consensus_4570#1      ------------------------------------------------------------
                                                                                  

consensus_4570#0      GGGGGGCGGATCTGGCCGCCGGAGGGCCACGGGGAGCGGATCCGAGCGCGGGCGGCGGCG 240
consensus_4570#1      ------------------------------------------------------------
                                                                                  

consensus_4570#0      CGCGGCTGATCTGGGCACGGGCGGCTGCTCTCGGACGCCGGCGGCGGTGCGCGGCGGATC 300
consensus_4570#1      ------------------------------------------------------------
                                                                                  

consensus_4570#0      CAGGCGCTAGCGGGGAGGCTAGATCCGCCGCCGCCAGATCGGCGGCGCCTGGCCGGTGGT 360
consensus_4570#1      ------------------------------------------------------------
                                                                                  

consensus_4570#0      CACCGGGGAGCTGCATGCTAGCTGCAGAGAGGAGGCACGACCGCACGAGAGGATCCTCTC 420
consensus_4570#1      ------------------------------------------------------------
                                                                                  

consensus_4570#0      TTCAGTTCATGCGTTTGGTTCTGATCTGTTTGCACGTGAAACCATTTCTGCAGCGGGCTG 480
consensus_4570#1      ------------------------------------------------------------
                                                                                  

consensus_4570#0      CGGTGGAGGCTGCGGCGGGGCTCTGTGCAGCGGTGGTGGAGGCCGGCGGGGCTCGGCGGC 540
consensus_4570#1      ------------------------------------------------------------
                                                                                  

consensus_4570#0      GGCGTCGTCGAGGCAGAGGCAGTGGAGGCTTGAATGCTTGAACTTTTTTGATGCTTGAAT 600
consensus_4570#1      -------------------------------------------CACGAGGACACTGACAT 17
                                                                       **  **   **

consensus_4570#0      GC-TTGGGGGAATAGAAATTTTTGACTGTAAATTTAAATTGTGCTTGTGTGAATTGAATT 659
consensus_4570#1      GGACTGACGGAGTAGAAATTTTTGACTGTAAATTTAAATTGTGCTTGTGTGAATTGAATT 77
                      *   **  *** ************************************************

consensus_4570#0      TTTTGACTATAATTTTTGGTTGGGTGAATGGAAATTTCTG-------------------- 699
consensus_4570#1      TTTTGACTGTAATTTCTGCTTGGGTGAATGGAAATTTCTGTGGATTTTTGAAAAAAAAAA 137
                      ******** ****** ** *********************                    

consensus_4570#0      ----------------------------------------
consensus_4570#1      AAAAAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 177