cluster # 4571

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4571 cluster # 4571 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4571#0 length = 1288 sequences # 1

consensus_4571#1 length = 802 sequences # 1
consensus_4571#2 length = 213 sequences # 1

consensusID : consensus_4571#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1288
fasta sequence

                              [GGCAGAAGCTTTTTTTTTTTCCTTAGGCAGAAGACAGAGGCAGAGGTCGTCAGTCAGTGTAGATTAGGTATACTTCGTACTGACCACCAGCTTCGTGCGCATGCATGAATGGCGAAGTGGTGGTGTAACTGACGATCGATTTCGGGAGGTAACCGGCGAGTAAGCTAGGAGAGGATGCACAGCCGCAGGACCCCCCCACCATCCATGCACAGTGGCCTTCACAAGCTCGCAGAGCTCAGCTCCGGCTGCCTGCACTGCACTGGCTGCAACATACGGTGTAGGTCGCCCAGATAGTAGCAAATATTCTCTCTACTCGAGTCTCGTCATCTCTTATCTTCAGAGTTCGCACTCTTCAAGAATACACCGGGCAACTCGCCGAAGAAGAAGCTTCAGCGGCAGAAGAAGAATCACCCATCGAGAGTTTTCCCCTCCCAAGGAAGATCAGGGATCTCTTCTTGAGATAAAAACAGTCATGTCTGAGACCATAGATTTAACCGGAGATAGATGCATTCTTAAGACAGTGATCAGGAGAGCAAAGGATGATGCTACTGCACCTTCAGATAGTCTTCCCATTGTTGATGTTCACTATGAAGGAACACTTGCTGAGAACGGGGAAGTGTTTGACACTACTCATGAAGACAACTCCGTCTTCTCATTTGAAATTGGAGAGGGAACTGTCATCAAGGCATGGGATATCGCCGTGAAAACAATGAAGGTTGGAGAGGTTGCAAAGATCACATGCAAGCCAGAATATGCTTATGGAGCTGCAGGTTCACCTCCAGAGATACCGCCAGATGCAACTCTCACTTTTGAGGTTGAGTTAATCGCATGCAGGCCGAGGAAAGGTTCTAGTGTGGAAAGTGTATCTGAAGAGAAAGCTAGGCTTGAGGAGTTGAAGAAGCAGAGGGAGATCGCTGCTGCAGCCAAAGAGGAAGAGAAGAGGAAAAGGGAGGAAGCAAAAGCAGCTGCAGCTGCGCGTGTACAAGCAAAACTTGAAGCAAAAAAGGGCAAGGGAAAGAAGGCCAAATAGATAATATCACACTAAGACAAGTTATGAGGTAGGAGTATATAAAAAGTATAAAGTTATGTATGAACCTGGTAACTGTATGCTGTTGAAATTCCACACAAACACAAACTTTGTTTGGTTGTAGTTAAAATGGGCCATGAATATGCATATAAACAAAAAGAAGTCGTGTCACTTTGATCACAGTGTGCACCAGCCCATTTGTGCAAGAGTTTAATGTTTTTAGGGCATGTTCAGAGATGCAATTGGTAAAATATATGAAGT]

[+] EMBL AK105246             [GGCAGAAGCTTTTTTTTTTTCCTTAGGCAGAAGACAGAGGCAGAGGTCGTCAGTCAGTGTAGATTAGGTATACTTCGTACTGACCACCAGCTTCGTGCGCATGCATGAATGGCGAAGTGGTGGTGTAACTGACGATCGATTTCGGGAGGTAACCGGCGAGTAAGCTAGGAGAGGATGCACAGCCGCAGGACCCCCCCACCATCCATGCACAGTGGCCTTCACAAGCTCGCAGAGCTCAGCTCCGGCTGCCTGCACTGCACTGGCTGCAACATACGGTGTAGGTCGCCCAGATAGTAGCAAATATTCTCTCTACTCGAGTCTCGTCATCTCTTATCTTCAGAGTTCGCACTCTTCAAGAATACACCGGGCAACTCGCCGAAGAAGAAGCTTCAGCGGCAGAAGAAGAATCACCCATCGAGAGTTTTCCCCTCCCAAGGAAGATCAGGGATCTCTTCTTGAGATAAAAACAGTCATGTCTGAGACCATAGATTTAACCGGAGATAGATGCATTCTTAAGACAGTGATCAGGAGAGCAAAGGATGATGCTACTGCACCTTCAGATAGTCTTCCCATTGTTGATGTTCACTATGAAGGAACACTTGCTGAGAACGGGGAAGTGTTTGACACTACTCATGAAGACAACTCCGTCTTCTCATTTGAAATTGGAGAGGGAACTGTCATCAAGGCATGGGATATCGCCGTGAAAACAATGAAGGTTGGAGAGGTTGCAAAGATCACATGCAAGCCAGAATATGCTTATGGAGCTGCAGGTTCACCTCCAGAGATACCGCCAGATGCAACTCTCACTTTTGAGGTTGAGTTAATCGCATGCAGGCCGAGGAAAGGTTCTAGTGTGGAAAGTGTATCTGAAGAGAAAGCTAGGCTTGAGGAGTTGAAGAAGCAGAGGGAGATCGCTGCTGCAGCCAAAGAGGAAGAGAAGAGGAAAAGGGAGGAAGCAAAAGCAGCTGCAGCTGCGCGTGTACAAGCAAAACTTGAAGCAAAAAAGGGCAAGGGAAAGAAGGCCAAATAGATAATATCACACTAAGACAAGTTATGAGGTAGGAGTATATAAAAAGTATAAAGTTATGTATGAACCTGGTAACTGTATGCTGTTGAAATTCCACACAAACACAAACTTTGTTTGGTTGTAGTTAAAATGGGCCATGAATATGCATATAAACAAAAAGAAGTCGTGTCACTTTGATCACAGTGTGCACCAGCCCATTTGTGCAAGAGTTTAATGTTTTTAGGGCATGTTCAGAGATGCAATTGGTAAAATATATGAAGT]




>consensus_4571#0
GGCAGAAGCTTTTTTTTTTTCCTTAGGCAGAAGACAGAGGCAGAGGTCGTCAGTCAGTGT
AGATTAGGTATACTTCGTACTGACCACCAGCTTCGTGCGCATGCATGAATGGCGAAGTGG
TGGTGTAACTGACGATCGATTTCGGGAGGTAACCGGCGAGTAAGCTAGGAGAGGATGCAC
AGCCGCAGGACCCCCCCACCATCCATGCACAGTGGCCTTCACAAGCTCGCAGAGCTCAGC
TCCGGCTGCCTGCACTGCACTGGCTGCAACATACGGTGTAGGTCGCCCAGATAGTAGCAA
ATATTCTCTCTACTCGAGTCTCGTCATCTCTTATCTTCAGAGTTCGCACTCTTCAAGAAT
ACACCGGGCAACTCGCCGAAGAAGAAGCTTCAGCGGCAGAAGAAGAATCACCCATCGAGA
GTTTTCCCCTCCCAAGGAAGATCAGGGATCTCTTCTTGAGATAAAAACAGTCATGTCTGA
GACCATAGATTTAACCGGAGATAGATGCATTCTTAAGACAGTGATCAGGAGAGCAAAGGA
TGATGCTACTGCACCTTCAGATAGTCTTCCCATTGTTGATGTTCACTATGAAGGAACACT
TGCTGAGAACGGGGAAGTGTTTGACACTACTCATGAAGACAACTCCGTCTTCTCATTTGA
AATTGGAGAGGGAACTGTCATCAAGGCATGGGATATCGCCGTGAAAACAATGAAGGTTGG
AGAGGTTGCAAAGATCACATGCAAGCCAGAATATGCTTATGGAGCTGCAGGTTCACCTCC
AGAGATACCGCCAGATGCAACTCTCACTTTTGAGGTTGAGTTAATCGCATGCAGGCCGAG
GAAAGGTTCTAGTGTGGAAAGTGTATCTGAAGAGAAAGCTAGGCTTGAGGAGTTGAAGAA
GCAGAGGGAGATCGCTGCTGCAGCCAAAGAGGAAGAGAAGAGGAAAAGGGAGGAAGCAAA
AGCAGCTGCAGCTGCGCGTGTACAAGCAAAACTTGAAGCAAAAAAGGGCAAGGGAAAGAA
GGCCAAATAGATAATATCACACTAAGACAAGTTATGAGGTAGGAGTATATAAAAAGTATA
AAGTTATGTATGAACCTGGTAACTGTATGCTGTTGAAATTCCACACAAACACAAACTTTG
TTTGGTTGTAGTTAAAATGGGCCATGAATATGCATATAAACAAAAAGAAGTCGTGTCACT
TTGATCACAGTGTGCACCAGCCCATTTGTGCAAGAGTTTAATGTTTTTAGGGCATGTTCA
GAGATGCAATTGGTAAAATATATGAAGT

consensusID : consensus_4571#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 802
fasta sequence

                              [CTCGTTTCAGTACTTGATGGAGCATATTATTCAGGAAGAATATTCAGGGAACATGATTGTCCATTTTTCATGTTTTGCTCGTTTGCTGGGATAATCTCTTAGGCATTCAATTTGAAGGAATCAGATATCAGCGCACCATGTTTTTTCATTAGATCCTAATAGTTTTGTTTTTTTGAGAAAATGCATTCTTGGATCAAATAGAAGAAATAAAATTTTTAAAAAAATGCATAAAAGCAGGAAGAAATTGGTTGTGGTTTGCTTCAACTATATGCTAGTGGGTTCTATGCTGATTTTCAGGATCTCTTCTTGAGATAAAAACAGTCATGTCTGAGACCATAGATTTAACCGGAGATAGATGCATTCTTAAGACAGTGATCAGGAGGGCAAAGGATGATGCTACTGCACCTTCAGATAGTCTTCCCATTGTTGATGTTCACTATGAAGGAACACTTGCTGAGAACGGGGAAGTGTTTGACACTACTCATGAAGACAACTCCGTCTTCTCATTTGAAATTGGAGAGGGAACTGTCATCAAGGCATGGGATATCGCCGTGAAAACAATGAAGGTAAATGGATGAACTGTTCGCTAGTTCATTATGATCAATAGCCCAAACAGTTCTTTTGCTGATAATACTGTTGTTAAATTGGACACCTGANGTGGGAAGAGGTTGCAAAGATCACATGCAAGCCAGAATATGCCTTATGGAGCCTGGCAGGNTCACCTNCAGAGATACCGGCAGATGCAACTCTCACTTTTTGGGGGTTGAGNTAATCGCATGCAGGCCGGGGGAAGGGTTCTAGN]

[+] EMBL CA764584             [CTCGTTTCAGTACTTGATGGAGCATATTATTCAGGAAGAATATTCAGGGAACATGATTGTCCATTTTTCATGTTTTGCTCGTTTGCTGGGATAATCTCTTAGGCATTCAATTTGAAGGAATCAGATATCAGCGCACCATGTTTTTTCATTAGATCCTAATAGTTTTGTTTTTTTGAGAAAATGCATTCTTGGATCAAATAGAAGAAATAAAATTTTTAAAAAAATGCATAAAAGCAGGAAGAAATTGGTTGTGGTTTGCTTCAACTATATGCTAGTGGGTTCTATGCTGATTTTCAGGATCTCTTCTTGAGATAAAAACAGTCATGTCTGAGACCATAGATTTAACCGGAGATAGATGCATTCTTAAGACAGTGATCAGGAGGGCAAAGGATGATGCTACTGCACCTTCAGATAGTCTTCCCATTGTTGATGTTCACTATGAAGGAACACTTGCTGAGAACGGGGAAGTGTTTGACACTACTCATGAAGACAACTCCGTCTTCTCATTTGAAATTGGAGAGGGAACTGTCATCAAGGCATGGGATATCGCCGTGAAAACAATGAAGGTAAATGGATGAACTGTTCGCTAGTTCATTATGATCAATAGCCCAAACAGTTCTTTTGCTGATAATACTGTTGTTAAATTGGACACCTGANGTGGGAAGAGGTTGCAAAGATCACATGCAAGCCAGAATATGCCTTATGGAGCCTGGCAGGNTCACCTNCAGAGATACCGGCAGATGCAACTCTCACTTTTTGGGGGTTGAGNTAATCGCATGCAGGCCGGGGGAAGGGTTCTAGN]




>consensus_4571#1
CTCGTTTCAGTACTTGATGGAGCATATTATTCAGGAAGAATATTCAGGGAACATGATTGT
CCATTTTTCATGTTTTGCTCGTTTGCTGGGATAATCTCTTAGGCATTCAATTTGAAGGAA
TCAGATATCAGCGCACCATGTTTTTTCATTAGATCCTAATAGTTTTGTTTTTTTGAGAAA
ATGCATTCTTGGATCAAATAGAAGAAATAAAATTTTTAAAAAAATGCATAAAAGCAGGAA
GAAATTGGTTGTGGTTTGCTTCAACTATATGCTAGTGGGTTCTATGCTGATTTTCAGGAT
CTCTTCTTGAGATAAAAACAGTCATGTCTGAGACCATAGATTTAACCGGAGATAGATGCA
TTCTTAAGACAGTGATCAGGAGGGCAAAGGATGATGCTACTGCACCTTCAGATAGTCTTC
CCATTGTTGATGTTCACTATGAAGGAACACTTGCTGAGAACGGGGAAGTGTTTGACACTA
CTCATGAAGACAACTCCGTCTTCTCATTTGAAATTGGAGAGGGAACTGTCATCAAGGCAT
GGGATATCGCCGTGAAAACAATGAAGGTAAATGGATGAACTGTTCGCTAGTTCATTATGA
TCAATAGCCCAAACAGTTCTTTTGCTGATAATACTGTTGTTAAATTGGACACCTGANGTG
GGAAGAGGTTGCAAAGATCACATGCAAGCCAGAATATGCCTTATGGAGCCTGGCAGGNTC
ACCTNCAGAGATACCGGCAGATGCAACTCTCACTTTTTGGGGGTTGAGNTAATCGCATGC
AGGCCGGGGGAAGGGTTCTAGN

consensusID : consensus_4571#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 213
fasta sequence

                              [AGTATATAAAAAGATAAAGTTATGTATGAACCTGGTAACTGTATGCTGTTGAAATTCCACACAAACACAAACTTTGTTTGGTTGTAGTTAAAATGGGCCATGAATATGCATATAAACAAAAAGAAGTCGTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF302011             [AGTATATAAAAAGATAAAGTTATGTATGAACCTGGTAACTGTATGCTGTTGAAATTCCACACAAACACAAACTTTGTTTGGTTGTAGTTAAAATGGGCCATGAATATGCATATAAACAAAAAGAAGTCGTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_4571#2
AGTATATAAAAAGATAAAGTTATGTATGAACCTGGTAACTGTATGCTGTTGAAATTCCAC
ACAAACACAAACTTTGTTTGGTTGTAGTTAAAATGGGCCATGAATATGCATATAAACAAA
AAGAAGTCGTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4571#0      GGCAGAAGCTTTTTTTTTTTCCTTAGGCAGAAGACAGAGGCAGAGGTCGTCAGTCAGTGT 60
consensus_4571#2      ------------------------------------------------------------
consensus_4571#1      ------------------------------------------------------------
                                                                                  

consensus_4571#0      AGATTAGGTATACTTCGTACTGACCACCAGCTTCGTGCGCATGCATGAATGGCGAAGTGG 120
consensus_4571#2      ------------------------------------------------------------
consensus_4571#1      ------------------------------------------------------------
                                                                                  

consensus_4571#0      TGGTGTAACTGACGATCGATTTCGGGAGGTAACCGGCGAGTAAGCTAGGAGAGGATGCAC 180
consensus_4571#2      ------------------------------------------------------------
consensus_4571#1      ------------------------------------------------------------
                                                                                  

consensus_4571#0      AGCCGCAGGACCCCCCCACCATCCATGCACAGTGGCCTTCACAAGCTCGCAGAGCTCAGC 240
consensus_4571#2      ------------------------------------------------------------
consensus_4571#1      ------------------------------------------------------------
                                                                                  

consensus_4571#0      TCCGGCTGCCTGCACTGCACTGGCTGCAACATACGGTGTAGGTCGCCCAGATAGTAGCAA 300
consensus_4571#2      ------------------------------------------------------------
consensus_4571#1      ------------------------------------------------------------
                                                                                  

consensus_4571#0      ATATTCTCTCTACTCGAGTCTCGTCATCTCTTATCTTCAGAGTTCGCACTCTTCAAGAAT 360
consensus_4571#2      ------------------------------------------------------------
consensus_4571#1      ------------------------------------------------------------
                                                                                  

consensus_4571#0      ACACCGGGCAACTCGCCGAAGAAGAAGCTTCAGCGGCAGAAGAAGAATCACCCATCGAGA 420
consensus_4571#2      ------------------------------------------------------------
consensus_4571#1      ------------------------------------------------------------
                                                                                  

consensus_4571#0      GTTTTCCCCTCCCAAGGAAGATCAGGGATCTCTTCTTGAGATAAAAACAGTCATGTCTGA 480
consensus_4571#2      ------------------------------------------------------------
consensus_4571#1      ------------------------------------------------------------
                                                                                  

consensus_4571#0      GACCATAGATTTAACCGGAGATAGATGCATTCTTAAGACAGTGATCAGGAGAGCAAAGGA 540
consensus_4571#2      ------------------------------------------------------------
consensus_4571#1      -CTCGTTTCAGTACTTGATGGAGCATATTATTCAGGAAGAATATTCAGGGAACATGATTG 59
                                                                                  

consensus_4571#0      TGATGCTACTGCACCTTCAGATAGTCTTCCCATTGTTGATGTTCACTATGAAGGAACACT 600
consensus_4571#2      ------------------------------------------------------------
consensus_4571#1      TCCATTTTTCATGTTTTGCTCGTTTGCTGGGATAATCTCTTAGGCATTCAATTTGAAGGA 119
                                                                                  

consensus_4571#0      TGCTGAGAACGGGGAAGTGTTTGACACTACTCATGAAGACAACTCCGTCTTCTCATTTGA 660
consensus_4571#2      ------------------------------------------------------------
consensus_4571#1      ATCAGATATCAGCGCACCATGTTTTTTCATTAGATCCTAATAGTTTTGTTTTTTTGAGAA 179
                                                                                  

consensus_4571#0      AATTGGAGAGGGAACTGTCATCAAGGCATGGGATATCGCCGTGAAAACAATGAAGGTTGG 720
consensus_4571#2      ------------------------------------------------------------
consensus_4571#1      AATGCATTCTTGGATCAAATAGAAGAAATAAAATTTTTAAAAAAATGCATAAAAGCAGGA 239
                                                                                  

consensus_4571#0      AGAGGTTGCAAAGATCACATGCAAGCCAGAATATGCTTATGGAGCTGCAGGTTCACCTCC 780
consensus_4571#2      ------------------------------------------------------------
consensus_4571#1      AGAAATTGGTTGTGGTTTGCTTCAACTATA----TGCTAGTGGGTTCTATGCTGATTTTC 295
                                                                                  

consensus_4571#0      AGAGATACCGCCAGATGCAACTCTCACTTTTGAGGTTGAGTTAATCGCATGCAGGCCGAG 840
consensus_4571#2      ------------------------------------------------------------
consensus_4571#1      AGGATCTCTTCTTGAGATAAAAACAGTCATGTCTGAGACCATAGATTTAACCGGAGATAG 355
                                                                                  

consensus_4571#0      GAAAGGTTCTAGTGTGGAAAGTGTATCTGAAGAGAAAGCTAGGCTTGAGGAGTTGAAGAA 900
consensus_4571#2      ------------------------------------------------------------
consensus_4571#1      ATGCATTCTTAAGACAGTGATCAGGAGGGCAAAGGATGATGCTACTGCACCTTCAGATAG 415
                                                                                  

consensus_4571#0      GCAGAGGGAGATCGCTGCTGCAGCCAAAGAGGAAGAGAAGAGGAAAAGGGAGGAAGCAAA 960
consensus_4571#2      ------------------------------------------------------------
consensus_4571#1      TCTTCCCATTGTTGATGTTCACTATGAAGGAACACTTGCTGAGAACGGGGAAGTGTTTGA 475
                                                                                  

consensus_4571#0      AGCAGCTGCAGCTGCGCGTGTACAAGCAAAACTTGAAGCAAAAAAGGGCAAGGGAAAGAA 1020
consensus_4571#2      ------------------------------------------------------------
consensus_4571#1      CACTACTCATGAAGACAACTCCGTCTTCTCATTTGAAATTGGAGAGGGAACTGTCATCAA 535
                                                                                  

consensus_4571#0      GGCCAAATAGATAATATCACACTAAGACAAGTTATGAGGTAGGAGTATATAAAAAGTATA 1080
consensus_4571#2      -------------------------------------------AGTATATAAAAAG-ATA 16
consensus_4571#1      GGCATGGGATATCGCCGTGAAAACAATGAAGGTAAATGGATGAACTGT-TCGCTAGTTCA 594
                                                                 * * * *    **   *

consensus_4571#0      AAGTTATGTATGAACCTGGTAACTGTAT-GCTGTTGAAATTCCACACAAACACAA-ACTT 1138
consensus_4571#2      AAGTTATGTATGAACCTGGTAACTGTAT-GCTGTTGAAATTCCACACAAACACAA-ACTT 74
consensus_4571#1      TTATGATCAATAGCCCAAACAGTTCTTTTGCTGATAATACTGTTGTTAAATTGGACACCT 654
                         * **  **   **    *  * * * **** * * * *      ***    * ** *

consensus_4571#0      TGTTTGGTTGTAGTTAAAATGGGCCATGAATATGC--ATATAAACAAAAAGAAGTCGTGT 1196
consensus_4571#2      TGTTTGGTTGTAGTTAAAATGGGCCATGAATATGC--ATATAAACAAAAAGAAGTCGTGT 132
consensus_4571#1      GANGTGGGAAGAGGTTGCAAAGATCACATGCAAGCCAGAATATGCCTTATGGAGCC-TGG 713
                          ***    ** *   *  *  **     * **    ***  *   * * ** * ** 

consensus_4571#0      CACTTTGATCACAGTGTGCACCAGCCCATTTGTGCAAGAGTTTAATGTTTTTAGGGCATG 1256
consensus_4571#2      CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 192
consensus_4571#1      CAGGNTCACCTNCAGAGATACCGGCAGATGCAACTCTCACTTTTTGGGGGTTGAGNTAAT 773
                      **     *           *       *          *                  *  

consensus_4571#0      TTCAGAGATGCAATTGGTAAAATATATGAAGT 1288
consensus_4571#2      AAAAAAAAAAAAAAAAAAAAA----------- 213
consensus_4571#1      CGCATGCAGGCCGGGGGAAGGGTTCTAGN--- 802
                         *   *          *