These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4573#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 509 fasta sequence [TACATCAAGAAGCGGCGGCGCGCGGAGCGGAGCGCGGAGGATGCGCCCGGCGTGCAAGGTTTCGCCAAGAAGGGTTCGTGGGACCTCCAAGTCGTTCCAGGGTCCCTGGCGTTCGACCGAGCCACCGAGGTGATCGACCGGTGTCCGCGACGAGAACCTCATCGGCCAGCCGGCCGGGTCCCGGGAACCGTGTACCCGCGTGAAGCTCGGGAGCCGGCGCGGTGTTCCCGGTGAAGCACATCACCCGGACACGCGCGGCGGCGGCGGCGGCGAGGAGCACCGGCGGCGTCGGCCGCCATGCTCCGTTCGCCGTCGGCGGCGCGGCGCACGGCGTCGGTGCGGTGCCGCGAGTTCGACTCGGAGGTGGGGACGCTGAGCTCGATCCGGCACGTGAACGTGGTGAAGCTCCTGTGCAGCATCACCAGCGACGACGGCGCGGCGAGCCTGCTGGTGTACGAGCACCTCCCCAATGGCAGCCTCTACGAGCGCCTGCACGAGGGGCAAAAGCT] [+] EMBL BI810737 [TACATCAAGAAGCGGCGGCGCGCGGAGCGGAGCGCGGAGGATGCGCCCGGCGTGCAAGGTTTCGCCAAGAAGGGTTCGTGGGACCTCCAAGTCGTTCCAGGGTCCCTGGCGTTCGACCGAGCCACCGAGGTGATCGACCGGTGTCCGCGACGAGAACCTCATCGGCCAGCCGGCCGGGTCCCGGGAACCGTGTACCCGCGTGAAGCTCGGGAGCCGGCGCGGTGTTCCCGGTGAAGCACATCACCCGGACACGCGCGGCGGCGGCGGCGGCGAGGAGCACCGGCGGCGTCGGCCGCCATGCTCCGTTCGCCGTCGGCGGCGCGGCGCACGGCGTCGGTGCGGTGCCGCGAGTTCGACTCGGAGGTGGGGACGCTGAGCTCGATCCGGCACGTGAACGTGGTGAAGCTCCTGTGCAGCATCACCAGCGACGACGGCGCGGCGAGCCTGCTGGTGTACGAGCACCTCCCCAATGGCAGCCTCTACGAGCGCCTGCACGAGGGGCA ] [+] EMBL C22618 [ GCGTCGGCCGCCATGCTCCGTTC CNTTCGGCGGCGCGGCGCACGGCNTCGGTGCGGTGCCGCGAGTTCGACTCGGAGGTGGGGACGCTGAGCTCGATCCGGCACGTGAACGTGGTGAAGCTCCTGTGCAGCATCACCAGCGACGACGGCGCGGCGAGCCTGCTGGTGTACGAGCACCTCCCCAATGGCAG CTCTACGAGCGCCTGCACGAGGGGCAAAAGCT] consensusID : consensus_4573#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 466 fasta sequence [TAGTGCTCCGGCGCTCGGCCGGTGATGTACATCAAGAAGCGCGGCGCGCGGAGGCGGAGCGGAGGAGCGCCGCCNCGGCAAGGTGTTCGGCAAGAAGGGTCGTGGGACCTCAAGTCGTTCAGGGTCCTGGCGTTCGACGAGCACGAGGTGATCGACGGTGTCCGCGACGAGAACCTCATCGGCAGCGGCGGGTCCGGGAACGTGTACCGCGTGAAGCTCGGGAGCGGCGCGGTGGTCCGGTGAAGCACATCACCCGGACACGCGCGGCGGCGGCGCGGCGAGGAGCACGCGGCGTCGCCGCCATGCTCCGTTCCCGTCGCCNCCGGCGCACGGCGTCGGTGCGGTCCGCGAGTTCGACTCGGAGGTGGGGACCTGAGCTCGATCCGGCACGTGAACGTGGTGAAGCTCCTGTGCAGCATCACCAGCGACGACGGCCGGCGAGCTGCTGGTGTACGACCACCCCCCC] [-] EMBL BU667035 [TAGTGCTCCGGCGCTCGGCCGGTGATGTACATCAAGAAGCGCGGCGCGCGGAGGCGGAGCGGAGGAGCGCCGCCNCGGCAAGGTGTTCGGCAAGAAGGGTCGTGGGACCTCAAGTCGTTCAGGGTCCTGGCGTTCGACGAGCACGAGGTGATCGACGGTGTCCGCGACGAGAACCTCATCGGCAGCGGCGGGTCCGGGAACGTGTACCGCGTGAAGCTCGGGAGCGGCGCGGTGGTCCGGTGAAGCACATCACCCGGACACGCGCGGCGGCGGCGCGGCGAGGAGCACGCGGCGTCGCCGCCATGCTCCGTTCCCGTCGCCNCCGGCGCACGGCGTCGGTGCGGTCCGCGAGTTCGACTCGGAGGTGGGGACCTGAGCTCGATCCGGCACGTGAACGTGGTGAAGCTCCTGTGCAGCATCACCAGCGACGACGGCCGGCGAGCTGCTGGTGTACGACCACCCCCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4573#0 ---------------------------TACATCAAGAAGCGGCGGCGCGCGGAGCGGAGC 33 consensus_4573#1 TAGTGCTCCGGCGCTCGGCCGGTGATGTACATCAAGAAGCG-CGGCGCGCGGAG-GCGGA 58 ************** ************ * * consensus_4573#0 GCGGAGGATGCGCCCGGCGTGCAAGGT-TTCGCCAAGAAGGGTTCGTGGGACCTCCAAGT 92 consensus_4573#1 GCGGAGGA-GCGCCGCCNCGGCAAGGTGTTCGGCAAGAAGGGT-CGTGGGACCTC-AAGT 115 ******** ***** ******* **** ********** *********** **** consensus_4573#0 CGTTCCAGGGTCCCTGGCGTTCGACCGAGCCACCGAGGTGATCGACCGGTGTCCGCGACG 152 consensus_4573#1 CGTTC-AGGGTCC-TGGCGTTCGAC-GAGCA--CGAGGTGATCGAC-GGTGTCCGCGACG 169 ***** ******* *********** **** ************* ************* consensus_4573#0 AGAACCTCATCGGCCAGCCGGCCGGGTCCCGGGAACCGTGTACCCGCGTGAAGCTCGGGA 212 consensus_4573#1 AGAACCTCATCGGC-AGCGG--CGGGTCCGGGAA--CGTGTACC-GCGTGAAGCTCGGGA 223 ************** *** * ******* ** * ******** *************** consensus_4573#0 GCCGGCGCGGTGTTCCCGGTGAAGCACATCACCCGGACACGCGCGGCGGCGGCGGCGGCG 272 consensus_4573#1 GC-GGCGCGGTGGTCC-GGTGAAGCACATCACCCGGACACGCGCGGCGGCGGCG-CGGCG 280 ** ********* *** ************************************* ***** consensus_4573#0 AGGAGCACCGGCGGCGTCGGCCGCCATGCTCCGTTCGCCGTCGGCGGCGCGGCGCACGGC 332 consensus_4573#1 AGGAGCAC--GCGGCGTCG-CCGCCATGCTCCGTTC-CCGTCGCCNCCG--GCGCACGGC 334 ******** ********* **************** ****** * ** ********* consensus_4573#0 GTCGGTGCGGTGCCGCGAGTTCGACTCGGAGGTGGGGACGCTGAGCTCGATCCGGCACGT 392 consensus_4573#1 GTCGGTGCGGT-CCGCGAGTTCGACTCGGAGGTGGGGAC-CTGAGCTCGATCCGGCACGT 392 *********** *************************** ******************** consensus_4573#0 GAACGTGGTGAAGCTCCTGTGCAGCATCACCAGCGACGACGGCGCGGCGAGCCTGCTGGT 452 consensus_4573#1 GAACGTGGTGAAGCTCCTGTGCAGCATCACCAGCGACGACGGC-CGGCGAGC-TGCTGGT 450 ******************************************* ******** ******* consensus_4573#0 GTACGAGCACCTCCCCAATGGCAGCCTCTACGAGCGCCTGCACGAGGGGCAAAAGCT 509 consensus_4573#1 GTACGACCACCCCCCC----------------------------------------- 466 ****** **** **** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||