cluster # 458

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Oryza sativa
cluster # 458 cluster # 458 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_458#0 length = 504 sequences # 1

consensus_458#1 length = 236 sequences # 1

consensusID : consensus_458#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 504
fasta sequence

                              [CGAGCTCTCATCCATCCATGAGGATCAGGAGGCGGCCTCAGTCCCTGCAAGCTCTCTTCTCCCTGCATCCCTCCTCAGATCCATCCACTGCTCCCCAGCCTCCACCAAGAAACCATGGACGTTACTGGCTCTCGGTAGACAAGGTGGATGAGGAGGAGAAGAAGTCGGAGCGGTTGCACTTGCACCCAAATGCGGATCTTGCCGACGACGACTCGTCGGCGCGATTGCGCGCAGCCGCRGCATTGCGTTGTTCCCGCAGACAATGCGGTTGTRGAATGCAGCAAGATCAGGCCCGTGGTGGTGCACAGCAGGGAGCAGCAGATGGTCACAGGAGCCTAGAGAATGGCCATTACAGCAAGCCTGATCCGGCGATCAGGAGTACTACAGGAGAGCGTCTCGTCAACGGCGTCGTCCGGGCAATGCCAGTAGCCGCGAACGGAAGGAAGAGACCAAGAACGACGGCGGCGGCGGCGGCGGACAAAGAAGCGGCGTTGCCCSCGGTTC]

[+] EMBL BE229474             [CGAGCTCTCATCCATCCATGAGGATCAGGAGGCGGCCTCAGTCCCTGCAAGCTCTCTTCTCCCTGCATCCCTCCTCAGATCCATCCACTGCTCCCCAGCCTCCACCAAGAAACCATGGACGTTACTGGCTCTCGGTAGACAAGGTGGATGAGGAGGAGAAGAAGTCGGAGCGGTTGCACTTGCACCCAAATGCGGATCTTGCCGACGACGACTCGTCGGCGCGATTGCGCGCAGCCGCRGCATTGCGTTGTTCCCGCAGACAATGCGGTTGTRGAATGCAGCAAGATCAGGCCCGTGGTGGTGCACAGCAGGGAGCAGCAGATGGTCACAGGAGCCTAGAGAATGGCCATTACAGCAAGCCTGATCCGGCGATCAGGAGTACTACAGGAGAGCGTCTCGTCAACGGCGTCGTCCGGGCAATGCCAGTAGCCGCGAACGGAAGGAAGAGACCAAGAACGACGGCGGCGGCGGCGGCGGACAAAGAAGCGGCGTTGCCCSCGGTTC]




>consensus_458#0
CGAGCTCTCATCCATCCATGAGGATCAGGAGGCGGCCTCAGTCCCTGCAAGCTCTCTTCT
CCCTGCATCCCTCCTCAGATCCATCCACTGCTCCCCAGCCTCCACCAAGAAACCATGGAC
GTTACTGGCTCTCGGTAGACAAGGTGGATGAGGAGGAGAAGAAGTCGGAGCGGTTGCACT
TGCACCCAAATGCGGATCTTGCCGACGACGACTCGTCGGCGCGATTGCGCGCAGCCGCRG
CATTGCGTTGTTCCCGCAGACAATGCGGTTGTRGAATGCAGCAAGATCAGGCCCGTGGTG
GTGCACAGCAGGGAGCAGCAGATGGTCACAGGAGCCTAGAGAATGGCCATTACAGCAAGC
CTGATCCGGCGATCAGGAGTACTACAGGAGAGCGTCTCGTCAACGGCGTCGTCCGGGCAA
TGCCAGTAGCCGCGAACGGAAGGAAGAGACCAAGAACGACGGCGGCGGCGGCGGCGGACA
AAGAAGCGGCGTTGCCCSCGGTTC

consensusID : consensus_458#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 236
fasta sequence

                              [AAAGCCCCCCTCCTTTAATTTGCACCCTCCCCAAATCTCCATTGCTCCCTCTCTCTCTCTCTCTCTCTCTCTCCTTCTCCTCCCCTTCTCTCTCTCTTTCTCTCTCATCCATCCATGAGGATCAGGAGGCGGCCCCAGTCCCCGCTGGTTCTCTCCTCCCTGCATCCCTCCTCAGATCCATCCACTGCTCCCCAGGCTCCACCAAGAAACCATGGACGCTACTGGCTCCCGGTGGA]

[+] EMBL CA758465             [AAAGCCCCCCTCCTTTAATTTGCACCCTCCCCAAATCTCCATTGCTCCCTCTCTCTCTCTCTCTCTCTCTCTCCTTCTCCTCCCCTTCTCTCTCTCTTTCTCTCTCATCCATCCATGAGGATCAGGAGGCGGCCCCAGTCCCCGCTGGTTCTCTCCTCCCTGCATCCCTCCTCAGATCCATCCACTGCTCCCCAGGCTCCACCAAGAAACCATGGACGCTACTGGCTCCCGGTGGA]




>consensus_458#1
AAAGCCCCCCTCCTTTAATTTGCACCCTCCCCAAATCTCCATTGCTCCCTCTCTCTCTCT
CTCTCTCTCTCTCCTTCTCCTCCCCTTCTCTCTCTCTTTCTCTCTCATCCATCCATGAGG
ATCAGGAGGCGGCCCCAGTCCCCGCTGGTTCTCTCCTCCCTGCATCCCTCCTCAGATCCA
TCCACTGCTCCCCAGGCTCCACCAAGAAACCATGGACGCTACTGGCTCCCGGTGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_458#0      ------------------------------------------------------------
consensus_458#1      AAAGCCCCCCTCCTTTAATTTGCACCCTCCCCAAATCTCCATTGCTCCCTCTCTCTCTCT 60
                                                                                 

consensus_458#0      -------------------------------------CGAGCTCTCATCCATCCATGAGG 23
consensus_458#1      CTCTCTCTCTCTCCTTCTCCTCCCCTTCTCTCTCTCTTTCTCTCTCATCCATCCATGAGG 120
                                                              *******************

consensus_458#0      ATCAGGAGGCGGCCTCAGTCCCTGCAAGCTCTCTTCTCCCTGCATCCCTCCTCAGATCCA 83
consensus_458#1      ATCAGGAGGCGGCCCCAGTCCCCGCTGGTTCTCTCCTCCCTGCATCCCTCCTCAGATCCA 180
                     ************** ******* **  * ***** *************************

consensus_458#0      TCCACTGCTCCCCAGCCTCCACCAAGAAACCATGGACGTTACTGGCTCTCGGTAGACAAG 143
consensus_458#1      TCCACTGCTCCCCAGGCTCCACCAAGAAACCATGGACGCTACTGGCTCCCGGTGGA---- 236
                     *************** ********************** ********* **** **    

consensus_458#0      GTGGATGAGGAGGAGAAGAAGTCGGAGCGGTTGCACTTGCACCCAAATGCGGATCTTGCC 203
consensus_458#1      ------------------------------------------------------------
                                                                                 

consensus_458#0      GACGACGACTCGTCGGCGCGATTGCGCGCAGCCGCRGCATTGCGTTGTTCCCGCAGACAA 263
consensus_458#1      ------------------------------------------------------------
                                                                                 

consensus_458#0      TGCGGTTGTRGAATGCAGCAAGATCAGGCCCGTGGTGGTGCACAGCAGGGAGCAGCAGAT 323
consensus_458#1      ------------------------------------------------------------
                                                                                 

consensus_458#0      GGTCACAGGAGCCTAGAGAATGGCCATTACAGCAAGCCTGATCCGGCGATCAGGAGTACT 383
consensus_458#1      ------------------------------------------------------------
                                                                                 

consensus_458#0      ACAGGAGAGCGTCTCGTCAACGGCGTCGTCCGGGCAATGCCAGTAGCCGCGAACGGAAGG 443
consensus_458#1      ------------------------------------------------------------
                                                                                 

consensus_458#0      AAGAGACCAAGAACGACGGCGGCGGCGGCGGCGGACAAAGAAGCGGCGTTGCCCSCGGTT 503
consensus_458#1      ------------------------------------------------------------
                                                                                 

consensus_458#0      C 504
consensus_458#1      -