cluster # 4582

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4582 cluster # 4582 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4582#0 length = 518 sequences # 1

consensus_4582#1 length = 491 sequences # 2

consensusID : consensus_4582#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 518
fasta sequence

                              [GGAAGAANAANCCCNNAANNNTTATNNANCCCNCCNGNNGGNCNNCCAAGGAAGNNATNCCNTANCANAANNGGNCNCGCNNTCGTCAANCGNNCGGGCACGTTCCTAAAGATGGCTAATGANCGNTGCGCNCGAANTCTCGGCGGTNCGNAGCGAGCGTNCCNGCNTCCGGATCCGAGCGNCNGGNNNNNNNCCNNNCCNNGCTTCACCGCTCGACGGTNACGACGACGACGTTGCCGGCTCCGACGATGACGACGATACGTTGCCACAGCAGGGCGGCAGCGAGCGGGTTGGCGCGCGAGTAGGGCGGCGGCGCCCGGTCCTGATTTTCGTTTTTTTTATTTTCGCTTTTTTTGGGTTCCGTGCGGGCGGTATAATTTGACCGATTATTCCGTGTGGTCCACTTAATCCGACCGCCTGCCCGCCCGGTTGGGTCGTCCGCCCGCGAAAATATTAATTTTCCCATNCNATTGGCTGGAGACGGGCCGGACAATCGCAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AT003554             [GGAAGAANAANCCCNNAANNNTTATNNANCCCNCCNGNNGGNCNNCCAAGGAAGNNATNCCNTANCANAANNGGNCNCGCNNTCGTCAANCGNNCGGGCACGTTCCTAAAGATGGCTAATGANCGNTGCGCNCGAANTCTCGGCGGTNCGNAGCGAGCGTNCCNGCNTCCGGATCCGAGCGNCNGGNNNNNNNCCNNNCCNNGCTTCACCGCTCGACGGTNACGACGACGACGTTGCCGGCTCCGACGATGACGACGATACGTTGCCACAGCAGGGCGGCAGCGAGCGGGTTGGCGCGCGAGTAGGGCGGCGGCGCCCGGTCCTGATTTTCGTTTTTTTTATTTTCGCTTTTTTTGGGTTCCGTGCGGGCGGTATAATTTGACCGATTATTCCGTGTGGTCCACTTAATCCGACCGCCTGCCCGCCCGGTTGGGTCGTCCGCCCGCGAAAATATTAATTTTCCCATNCNATTGGCTGGAGACGGGCCGGACAATCGCAAAAAAAAAAAAAAAAAAAAA]




>consensus_4582#0
GGAAGAANAANCCCNNAANNNTTATNNANCCCNCCNGNNGGNCNNCCAAGGAAGNNATNC
CNTANCANAANNGGNCNCGCNNTCGTCAANCGNNCGGGCACGTTCCTAAAGATGGCTAAT
GANCGNTGCGCNCGAANTCTCGGCGGTNCGNAGCGAGCGTNCCNGCNTCCGGATCCGAGC
GNCNGGNNNNNNNCCNNNCCNNGCTTCACCGCTCGACGGTNACGACGACGACGTTGCCGG
CTCCGACGATGACGACGATACGTTGCCACAGCAGGGCGGCAGCGAGCGGGTTGGCGCGCG
AGTAGGGCGGCGGCGCCCGGTCCTGATTTTCGTTTTTTTTATTTTCGCTTTTTTTGGGTT
CCGTGCGGGCGGTATAATTTGACCGATTATTCCGTGTGGTCCACTTAATCCGACCGCCTG
CCCGCCCGGTTGGGTCGTCCGCCCGCGAAAATATTAATTTTCCCATNCNATTGGCTGGAG
ACGGGCCGGACAATCGCAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_4582#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 491
fasta sequence

                              [GCGGGAAAACGGAAAACGGGNCNAAGCCCNNTAACAAAGAAACNCGGANANGNNNCGGCGGCAGGCANACNGGNCGCGCTCCTCAAGCATGGNTAGATGGCCGGCGCGCACGAAATCGCGGCGGTCGAAACNAAGCGTCCGGCGACCGGATCCGGCGGNGGGAGNCCNCTTCCGCCCTCCCCCGCTCGACGGTGACGACGACGACGTTGCCGGCTCCGACGATGACG-ACGATACGTTGCCACAGC-AGGGCGGCAGCGAGCGGGTTGGCGCGCGAGTAGGGCGGCGGCGCCCGGTCCTGATTTTCGTTTTTTTTATTTTCGCTTTTTTTGGGTTCCGTGCGGNCGGTATAATTTGACCGATTATTCCGTGTGGTCCACTTAATCCGACCGCCTGCCCGCCCGGTTGGGTCGTCCGCCCGCGAAAATATTAATTTTCCCATACGATTGGCTGGAGACGGGCCGGACAATCGCAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AT003620             [GCGGGAAAACGGAAAACGGGNCNAAGCCCNNTAACAAAGAAACNCGGANANGNNNCGGCGGCAGGCANACNGGNCGCGCTCCTCAAGCATGGNTAGATGGCCGGCGCGCACGAAATCGCGGCGGTCGAAACNAAGCGTCCGGCGACCGGATCCGGCGGNGGGAGNCCNCTTCCGCCCTCCCCCGCTCGACGGTGACGACGACGACGTTGCCGGCTCCGACGATGACG ACGATACGTTGCCACAGC AGGGCGGCAGCGAGCGGGTTGGCGCGCGAGTAGGGCGGCGGCGCCCGGTCCTGATTTTCGTTTTTTTTATTTTCGCTTTTTTTGGGTTCCGTGCGGNCGGTATAATTTGACCGATTATTCCGTGTGGTCCACTTAATCCGACCGCCTGCCCGCCCGGTTGGGTCGTCCGCCCGCGAAAATATTAATTTTCCCATACGATTGGCTGGAGACGGGCCGGACAATCGCAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AT003743             [                                                                                                                                                                                                               ttCCGGGTNCGACGATGACGCCCGANNCGTTGCCCCANCAAGGGCGGCAGCGANCGGGTTGGCGCGCGAGTAGGGCGGCGGCGCCCGGTCCTGATTTTCGTTTTTTTTATTTTCGCTTTTTTTGGGTTCCGTGCGGGCGGTATAATTTGACCGATTATTCCGTGTGGTCCACTTAATCCGACCGCCTGCCCGCCCGGTTGGGTCGTCCGCCCGCGAAAATATTAATTTTCCCATACGATTGGCTGGAGACGGGCCGGACAATCGCAAAAAAAAAAAAAAAAAAAA ]




>consensus_4582#1
GCGGGAAAACGGAAAACGGGNCNAAGCCCNNTAACAAAGAAACNCGGANANGNNNCGGCG
GCAGGCANACNGGNCGCGCTCCTCAAGCATGGNTAGATGGCCGGCGCGCACGAAATCGCG
GCGGTCGAAACNAAGCGTCCGGCGACCGGATCCGGCGGNGGGAGNCCNCTTCCGCCCTCC
CCCGCTCGACGGTGACGACGACGACGTTGCCGGCTCCGACGATGACGACGATACGTTGCC
ACAGCAGGGCGGCAGCGAGCGGGTTGGCGCGCGAGTAGGGCGGCGGCGCCCGGTCCTGAT
TTTCGTTTTTTTTATTTTCGCTTTTTTTGGGTTCCGTGCGGNCGGTATAATTTGACCGAT
TATTCCGTGTGGTCCACTTAATCCGACCGCCTGCCCGCCCGGTTGGGTCGTCCGCCCGCG
AAAATATTAATTTTCCCATACGATTGGCTGGAGACGGGCCGGACAATCGCAAAAAAAAAA
AAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4582#0      GGAAGAANAANCCCNNAANNNTTATNNANCCCNCCNGNNGGNCNNCCAAGGAAGNNATNC 60
consensus_4582#1      ---------------GCGGGAAAACGGAAAACGGGNCNAAGCCCNNTAACAAAGAAAC-- 43
                                             *   *   *   * *  * * *  **  ***  *   

consensus_4582#0      CNTANCANAANNGGNCNCGCNNTCGTCAANCGNNCGGGCACGTTCCTAAAG-ATGGCTA- 118
consensus_4582#1      ----NCGGANANGNNNCGGCGGCAGGCANACNG---GNCGCGCTCCTCAAGCATGGNTAG 96
                          **  *  ** *   **    * **  *     * * ** **** *** **** ** 

consensus_4582#0      ATGANCGNTGCGCNCGAANTCTCGGCGGTNCGNAGCGAGCGTNCCNGCNTCCGGATCCGA 178
consensus_4582#1      ATGGCCGGCGCGCACGAAATCGCGGCGGTCGAAACNAAGCGTCC-GGCGACCGGATCCG- 154
                      ***  **  **** **** ** *******    *   ***** *  **  ********* 

consensus_4582#0      GCGNCNGGNNNNNNNCCNNNCCNNGCTTCACCGCTCGACGGTNACGACGACGACGTTGCC 238
consensus_4582#1      ---GCGGNGGGAGNCCNCTTCCGCCCTCCCCCGCTCGACGGTGACGACGACGACGTTGCC 211
                          * *      * *    **   ** * ************ *****************

consensus_4582#0      GGCTCCGACGATGACGACGATACGTTGCCACAGCAGGGCGGCAGCGAGCGGGTTGGCGCG 298
consensus_4582#1      GGCTCCGACGATGACGACGATACGTTGCCACAGCAGGGCGGCAGCGAGCGGGTTGGCGCG 271
                      ************************************************************

consensus_4582#0      CGAGTAGGGCGGCGGCGCCCGGTCCTGATTTTCGTTTTTTTTATTTTCGCTTTTTTTGGG 358
consensus_4582#1      CGAGTAGGGCGGCGGCGCCCGGTCCTGATTTTCGTTTTTTTTATTTTCGCTTTTTTTGGG 331
                      ************************************************************

consensus_4582#0      TTCCGTGCGGGCGGTATAATTTGACCGATTATTCCGTGTGGTCCACTTAATCCGACCGCC 418
consensus_4582#1      TTCCGTGCGGNCGGTATAATTTGACCGATTATTCCGTGTGGTCCACTTAATCCGACCGCC 391
                      ********** *************************************************

consensus_4582#0      TGCCCGCCCGGTTGGGTCGTCCGCCCGCGAAAATATTAATTTTCCCATNCNATTGGCTGG 478
consensus_4582#1      TGCCCGCCCGGTTGGGTCGTCCGCCCGCGAAAATATTAATTTTCCCATACGATTGGCTGG 451
                      ************************************************ * *********

consensus_4582#0      AGACGGGCCGGACAATCGCAAAAAAAAAAAAAAAAAAAAA 518
consensus_4582#1      AGACGGGCCGGACAATCGCAAAAAAAAAAAAAAAAAAAAA 491
                      ****************************************