|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4583#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 758 fasta sequence
[CCGAAATGGATAAACCAGCGCCGCAGGCGTTCGTATACCGTATCAGCACGGCGGATGAGTGGGCGCAGCTTCAGCGCACCGGCGGCACCCTTGGCGGTGACCTCGACCGCTCCACCGGCTGTATCCACCTCAGCGACCTCAGTCAGGTGAGGAAAACGCTTAAGAACTTTTTCCTAGGAAGGAATGATCTATACCTACTACAAGTTGACACTTCCAAGCTTTCAGATGGCTTAGTTTATGAGGCAGCTGATGATTCAAACTATTTTCCTCATTTCTATGGCCCTGGTCGGAGTTTTGCACCTCTTCAACTAGACGCTGTTATCAAGGAGGCAGAGAAAATAGTTCTGGTAAACAATGATTTCACCTGCAGTCTACTTGATGGAGCAGACCCCTTATCGTGATGTGTAAGGGTGACCTTTCCCTTGATCTTTATAATGTTTTGAAAAATTCGCTACAGGACGCTCAAAAGTTTGCAGTTATTTGTAAAAAAAGCTGCAAAAATGCAAAAATATTACTGCTCCATATCTAACATCTCCAGGAAGTTGAACCTGGTATATTCCAAGGATCATAGTAAGGGCAGACATATTGTATGCATCATATTTATAAACATCATTGCATATTCTTCAGTAGCCTTAACTGTATGCCAAGAGACAATCTTATTTTTTGATCACCCCACCAAATTAATGTGAAGAATGATAGCTGTATAATCTCTAATTCCTGTTAAAAAGGGTGCAAACTTGAAGTATTGATTAGTTCTC]
[+] EMBL CF326132 [CCGAAATGGATAAACCAGCGCCGCAGGCGTTCGTATACCGTATCAGCACGGCGGATGAGTGGGCGCAGCTTCAGCGCACCGGCGGCACCCTTGGCGGTGACCTCGACCGCTCCACCGGCTGTATCCACCTCAGCGACCTCAGTCAGGTGAGGAAAACGCTTAAGAACTTTTTCCTAGGAAGGAATGATCTATACCTACTACAAGTTGACACTTCCAAGCTTTCAGATGGCTTAGTTTATGAGGCAGCTGATGATTCAAACTATTTTCCTCATTTCTATGGCCCTGGTCGGAGTTTTGCACCTCTTCAACTAGACGCTGTTATCAAGGAGGCAGAGAAAATAGTTCTGGTAAACAATGATTTCACCTGCAGTCTACTTGATGGAGCAGACCCCTTATCGTGATGTGTAAGGGTGACCTTTCCCTTGATCTTTATAATGTTTTGAAAAATTCGCTACAGGACGCTCAAAAGTTTGCAGTTATTTGTAAAAAAAGCTGCAAAAATGCAAAAATATTACTGCTCCAT ]
[+] EMBL AK064634 [ GCGGATGAGTGGGCGCAGCTTCAGCGCACCGGCGGCACCCTTGGCGGTGACCTCGACCGCTCCACCGGCTGTATCCACCTCAGCGACCTCGGTCAGGTGAGGAAAACGCTTAAGAACTTTTTCCTAGGAAGGAATGATCTATACCTACTACAAGTTGACACTTCCAAGCTTTCAGATGGCTTAGTTTATGAGGCAGCTGATGATTCAAACTATTTTCCTCATTTCTATGGCCCTGGTCGGAGTTTTGCACCTCTTCAACTAGACGCTGTTATCAAGGAGGCAGAGAAAATAGTTCTGGTAAACAATGATTTCACCTGCAGTCTACTTGATGGAGCAGACCCCTTATCGTGATGTGTAAGGGTGACCTTTCCCTTGATCTTTATAATGTTTTGAAAAATTCGCTACAGGACGCTCAAAAGTTTGCAGTTATTTGTAAAAAAAGCTGCAAAAATGCAAAAATATTACTGCTCCATATCTAACATCTCCAGGAAGTTGAACCTGGTATATTCCAAGGATCATAGTAAGGGCAGACATATTGTATGCATCATATTTATAAACATCATTGCATATTCTTCAGTAGCCTTAACTGTATGCCAAGAGACAATCTTATTTTTTGATCACCCCACCAAATTAATGTGAAGAATGATAGCTGTATAATCTCTAATTCCTGTTAAAAAGGGTGCAAACTTGAAGTATTGATTAGTTCTC]
consensusID : consensus_4583#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence
[TCCTATAGGGGGAATTGGGGCGCGGGCNCCCCCTAGAGGTGGCCGGTACCCATAACCTTCCTTAGGTGGAGGCCGACCCAAGGGGGGGGCGCAGCTTTAGCGCACCGCGGGCACCCTAGGCGGTTTCCTTGCGCGCTCCACCGGCTGTTTCCCCCTCAGCGACCTCAGTCAGGTGAGGAAAACGCTTAAGAACCTTTTCCTAGGAAGGAATGATCTATACCTTCTACAAGTTCCCCCTTTCAAGCTTTTAGATGGCTTAGTTTTTGAGGCAGCTGATGATTCAAACTATTTTCCTCATTTTTATGGCCCTGGTCGGAGTTTTGCCCCTCTTCAACTAGACCCTGTTATCAAGGCAGAGGAAATAGTTTTGGTAAACAATGATTTCCCCTGCAGTTTACTTGATGGAGCAGACCCCTTATCGTGATGTGTAAGGGGGCCCTTTCCCCTGATCTTTATAATGTTTTGAAAAATTCGCTCCATGACGCTCAAAAGTTTGCAGTTATTTGTAAAAAAAGCTGCGAAAATGCAAAAATATTACTGCTCCATATCTAACATCTCCAGGAAGTTGAATTTGGTATATTCCAAGGATCATAGTAAGGGCAGCCATATTGTTTGCCTCATATATATAAACATCATTGCATATTTTTCAGTAGCCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA758999 [TCCTATAGGGGGAATTGGGGCGCGGGCNCCCCCTAGAGGTGGCCGGTACCCATAACCTTCCTTAGGTGGAGGCCGACCCAAGGGGGGGGCGCAGCTTTAGCGCACCGCGGGCACCCTAGGCGGTTTCCTTGCGCGCTCCACCGGCTGTTTCCCCCTCAGCGACCTCAGTCAGGTGAGGAAAACGCTTAAGAACCTTTTCCTAGGAAGGAATGATCTATACCTTCTACAAGTTCCCCCTTTCAAGCTTTTAGATGGCTTAGTTTTTGAGGCAGCTGATGATTCAAACTATTTTCCTCATTTTTATGGCCCTGGTCGGAGTTTTGCCCCTCTTCAACTAGACCCTGTTATCAAGGCAGAGGAAATAGTTTTGGTAAACAATGATTTCCCCTGCAGTTTACTTGATGGAGCAGACCCCTTATCGTGATGTGTAAGGGGGCCCTTTCCCCTGATCTTTATAATGTTTTGAAAAATTCGCTCCATGACGCTCAAAAGTTTGCAGTTATTTGTAAAAAAAGCTGCGAAAATGCAAAAATATTACTGCTCCATATCTAACATCTCCAGGAAGTTGAATTTGGTATATTCCAAGGATCATAGTAAGGGCAGCCATATTGTTTGCCTCATATATATAAACATCATTGCATATTTTTCAGTAGCCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4583#0 -----------------------------CCGAAATGGATAAACCAGCGCCGCAGGCGTT 31
consensus_4583#1 TCCTATAGGGGGAATTGGGGCGCGGGCNCCCCCTAGAGGTGGCCGGTACCCATAACCTTC 60
** * * * * ** * * *
consensus_4583#0 CGTATACCGTATCAGCACGGCGGATGAGTGGGCGCAGCTTCAGCGCACCGGCGGCACCCT 91
consensus_4583#1 CTTA---GGTGGAGGCCGACCCAAGGGGGGGGCGCAGCTTTAGCGCACCGCGGGCACCCT 117
* ** ** ** * * * * *********** ********* ********
consensus_4583#0 TGGCGGTGACCTCGACCGCTCCACCGGCTGTATCCACCTCAGCGACCTCAGTCAGGTGAG 151
consensus_4583#1 AGGCGGTTTCCTTGCGCGCTCCACCGGCTGTTTCCCCCTCAGCGACCTCAGTCAGGTGAG 177
****** *** * *************** *** ************************
consensus_4583#0 GAAAACGCTTAAGAACTTTTTCCTAGGAAGGAATGATCTATACCTACTACAAGTTGACAC 211
consensus_4583#1 GAAAACGCTTAAGAACCTTTTCCTAGGAAGGAATGATCTATACCTTCTACAAGTTCCCCC 237
**************** **************************** ********* * *
consensus_4583#0 TTCCAAGCTTTCAGATGGCTTAGTTTATGAGGCAGCTGATGATTCAAACTATTTTCCTCA 271
consensus_4583#1 TTTCAAGCTTTTAGATGGCTTAGTTTTTGAGGCAGCTGATGATTCAAACTATTTTCCTCA 297
** ******** ************** *********************************
consensus_4583#0 TTTCTATGGCCCTGGTCGGAGTTTTGCACCTCTTCAACTAGACGCTGTTATCAAGGAGGC 331
consensus_4583#1 TTTTTATGGCCCTGGTCGGAGTTTTGCCCCTCTTCAACTAGACCCTGTTATCAA---GGC 354
*** *********************** *************** ********** ***
consensus_4583#0 AGAGAAAATAGTTCTGGTAAACAATGATTTCACCTGCAGTCTACTTGATGGAGCAGACCC 391
consensus_4583#1 AGAGGAAATAGTTTTGGTAAACAATGATTTCCCCTGCAGTTTACTTGATGGAGCAGACCC 414
**** ******** ***************** ******** *******************
consensus_4583#0 CTTATCGTGATGTGTAAGGGTGACCTTTCCCTTGATCTTTATAATGTTTTGAAAAATTCG 451
consensus_4583#1 CTTATCGTGATGTGTAAGGGGGCCCTTTCCCCTGATCTTTATAATGTTTTGAAAAATTCG 474
******************** * ******** ****************************
consensus_4583#0 CTACAGGACGCTCAAAAGTTTGCAGTTATTTGTAAAAAAAGCTGCAAAAATGCAAAAATA 511
consensus_4583#1 CTCCATGACGCTCAAAAGTTTGCAGTTATTTGTAAAAAAAGCTGCGAAAATGCAAAAATA 534
** ** *************************************** **************
consensus_4583#0 TTACTGCTCCATATCTAACATCTCCAGGAAGTTGAACCTGGTATATTCCAAGGATCATAG 571
consensus_4583#1 TTACTGCTCCATATCTAACATCTCCAGGAAGTTGAATTTGGTATATTCCAAGGATCATAG 594
************************************ **********************
consensus_4583#0 TAAGGGCAGACATATTGTATGCATCATATTTATAAACATCATTGCATATTCTTCAGTAGC 631
consensus_4583#1 TAAGGGCAGCCATATTGTTTGCCTCATATATATAAACATCATTGCATATTTTTCAGTAGC 654
********* ******** *** ****** ******************** *********
consensus_4583#0 CTTAACTGTATGCCAAGAGACAATCTTATTTTTTGATCACCCCACCAAATTAATGTGAAG 691
consensus_4583#1 CTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA---------------------- 692
*** * * ** * * ** * *
consensus_4583#0 AATGATAGCTGTATAATCTCTAATTCCTGTTAAAAAGGGTGCAAACTTGAAGTATTGATT 751
consensus_4583#1 ------------------------------------------------------------
consensus_4583#0 AGTTCTC 758
consensus_4583#1 -------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||