These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4584#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 311 fasta sequence [NCGGCCTTTTGGTGGCCGATAAGNAACCTCTTGCATAAAACCCCAGCTTCCAGTAGCGTTCGTACATGTAAACACTATTCACATGTCCAANAGAGTACCACTCTATTGTCGGCATCTCTTTGCTGTGATGAAACAGCTCTATTAGCAATAACCAGATCTCTCTGAATTTTGACATCATACGACCCTTTTGAATTTTGATGGCCTCGATTACAGAGGCCAGTGTATCTTCCTTGCAACTTGCAACTTAGCAGAGTAGTGTTTTCGCATTGGAATGGAATGAGATGCACTTGATAGTGCAGTGGTAAAAAAAA] [+] EMBL AU082073 [NCGGCCTTTTGGTGGCCGATAAGNAACCTCTTGCATAAAACCCCAGCTTCCAGTAGCGTTCGTACATGTAAACACTATTCACATGTCCAANAGAGTACCACTCTATTGTCGGCATCTCTTTGCTGTGATGAAACAGCTCTATTAGCAATAACCAGATCTCTCTGAATTTTGACATCATACGACCCTTTTGAATTTTGATGGCCTCGATTACAGAGGCCAGTGTATCTTCCTTGCAACTTGCAACTTAGCAGAGTAGTGTTTTCGCATTGGAATGGAATGAGATGCACTTGATAGTGCAGTGGTAAAAAAAA] consensusID : consensus_4584#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 203 fasta sequence [TTTTATTGTCGGGCATTTTTTTGCTGGGAGTGAAACACGCTTTATTACCACATAACCCACGATTTTTTTGAATTTTGACATCATACGACCCCTTTGAATTTTGATGGCCTCGATTAACCGAGGCCCACGGGGATTTTCCTTGCAAACTTGCACACTTAGCACGAGTAGTGTTTTTGCACTTGGAATGGAAGAGAGAAGCACTT] [-] EMBL CB966863 [TTTTATTGTCGGGCATTTTTTTGCTGGGAGTGAAACACGCTTTATTACCACATAACCCACGATTTTTTTGAATTTTGACATCATACGACCCCTTTGAATTTTGATGGCCTCGATTAACCGAGGCCCACGGGGATTTTCCTTGCAAACTTGCACACTTAGCACGAGTAGTGTTTTTGCACTTGGAATGGAAGAGAGAAGCACTT] consensusID : consensus_4584#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 178 fasta sequence [CAGATCTCTCTGAATTTTGACATCATNCGNCCCTTTTGAATTTTGATGGCCTCGATTACAGAGGCCAGTGTATCTTCCTTGCAACTTGCAACTTAGCAGAGTAGTGTTTTCGCATTGGAATGGAATGAGATGACTTGATAGTGCAGTGNNGAGGGGTGCGTGGTTTTAACCCTGAGAT] [-] EMBL D42705 [CAGATCTCTCTGAATTTTGACATCATNCGNCCCTTTTGAATTTTGATGGCCTCGATTACAGAGGCCAGTGTATCTTCCTTGCAACTTGCAACTTAGCAGAGTAGTGTTTTCGCATTGGAATGGAATGAGATGACTTGATAGTGCAGTGNNGAGGGGTGCGTGGTTTTAACCCTGAGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4584#0 NCGGCCTTTTGGTGGCCGATAAGNAACCTCTTGCATAAAACCCCAGCTTCCAGTAGCGTT 60 consensus_4584#1 ------------------------------------------------------------ consensus_4584#2 ------------------------------------------------------------ consensus_4584#0 CGTACATGTAAACACTATTCACATGTCCAANAGAGTACCACTCTATTGTCGG-CATCTCT 119 consensus_4584#1 ----------------------------------------TTTTATTGTCGGGCATTTTT 20 consensus_4584#2 ------------------------------------------------------------ consensus_4584#0 TTGCTGTGA-TGAAACA-GCTCTATTAGCA-ATAACCA--GATCTCTCTGAATTTTGACA 174 consensus_4584#1 TTGCTGGGAGTGAAACACGCTTTATTACCACATAACCCACGATTTTTTTGAATTTTGACA 80 consensus_4584#2 -------------------------------------CA-GATCTCTCTGAATTTTGACA 22 *** * * ************ consensus_4584#0 TCATACGACCCTTTTGAATTTTGATGGCCTCGATTA-CAGAGGCCAGTGT--ATCTTCCT 231 consensus_4584#1 TCATACGACCCCTTTGAATTTTGATGGCCTCGATTAACCGAGGCCCACGGGGATTTTCCT 140 consensus_4584#2 TCATNCGNCCCTTTTGAATTTTGATGGCCTCGATTA-CAGAGGCCAGTGT--ATCTTCCT 79 **** ** *** ************************ * ****** * ** ***** consensus_4584#0 TGCAA-CTTGCA-ACTTAGCA-GAGTAGTGTTTTCGCA-TTGGAATGGAAT-GAGATGCA 286 consensus_4584#1 TGCAAACTTGCACACTTAGCACGAGTAGTGTTTTTGCACTTGGAATGGAAGAGAGAAGCA 200 consensus_4584#2 TGCAA-CTTGCA-ACTTAGCA-GAGTAGTGTTTTCGCA-TTGGAATGGAAT-GAGATG-A 133 ***** ****** ******** ************ *** *********** **** * * consensus_4584#0 CTTGATAGTGCAGTGGTAAAAAAAA-------------------- 311 consensus_4584#1 CTT------------------------------------------ 203 consensus_4584#2 CTTGATAGTGCAGTGNNGAGGGGTGCGTGGTTTTAACCCTGAGAT 178 *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||