These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4586#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1132 fasta sequence [TCTCTTTGGGTATTTCAGCCAGAAGACTGGCCTCCTTGTGCATCTTGAGGATTCTCACCTCACCAGGATTCAGTCCACCACCGGAGGGGACGCAGTTTACTGGGAGACCACCATCAATTCGTTCATTGAGGACTACCGCCCGGTGGAGGGTATAATGGTTGCGCACGCTGGTCGCTCCGCTGTGACCCTCTTCCGTTTCGGAGAGGTTGCCATGAGCCACACCAAGACTCGCATGGAGGAGGCATGGAGCATCGAGGAGGTCGCGTTCAATGTCCCTGGCCTCTCCATCGATTGCTTCATCCCGCCCACCGACATCAAGTCTGGATCCATCAGCGAGACCGTCGAGCTTCCTCATGGCGAGAAGAGCAAGGTTGGTCTTCTCCAATGCCATAGTGCTAAGGTGGCCGCGTTGGAGAAGGCAGACGACAACGTCGCGTGGAGCGGAGCACTGCAGCGAGATTTCAAGTGATTTGCTGTCTGTTCATAGTTGCTTCTTGCAGTGCCAGTGCTACTGACTCATTTTGATGATTGTAGGGTAGCAAGAAAGAGCCAAGGGAGGATGATTTGGAGCTTTGCAAATTCCAAATGTCCTGTAAATAGGAAGCTTAAGGAATTCACATGGTCTTCCATATCCCTGAGGAGGCCTATTGTGAAGAACCCTTACCTATCTTATTCAGATATATGGTAGTAGGTAGTTGTTAGTAACTTCTGGCGTTTTTTTTTGTCGGTGCCTTGTGGAAGAACCAGGAGGGGTGTTTCTCATCCTGCACCCAACCACATGGTAAGGGATCATGGTGGTGGTGCTGTTCTTTCTCTTATAGCGATACTAATTTATCGGAGCCCAGCGAGGAAGAAGGGTTTCTTCTCTGGCAATTGAGAGTGATTTTATTCTGATTTTAGCAGTCCAGTGTGCTTTTGGTTGGTGATAGTCTCCGGTCAAAACTAACTTTAGGTGAAAGATTAAGAGTTCTGAATTGCTGTTGCTCTTTGTTTAGGGTTATCATGATGGGTCTCTGGTTGTTTTTTTCCCTGTCCTTCCTTCACATCTCTCTTTATTTAGTATGAGATGGTGGTTGTATTCTACAGAAGTTGATGTAAGCCAGAACTTCTAATGAATATCATGGAATGAATT] [+] EMBL AK059252 [TCTCTTTGGGTATTTCAGCCAGAAGACTGGCCTCCTTGTGCATCTTGAGGATTCTCACCTCACCAGGATTCAGTCCACCACCGGAGGGGACGCAGTTTACTGGGAGACCACCATCAATTCGTTCATTGAGGACTACCGCCCGGTGGAGGGTATAATGGTTGCGCACGCTGGTCGCTCCGCTGTGACCCTCTTCCGTTTCGGAGAGGTTGCCATGAGCCACACCAAGACTCGCATGGAGGAGGCATGGAGCATCGAGGAGGTCGCGTTCAATGTCCCTGGCCTCTCCATCGATTGCTTCATCCCGCCCACCGACATCAAGTCTGGATCCATCAGCGAGACCGTCGAGCTTCCTCATGGCGAGAAGAGCAAGGTTGGTCTTCTCCAATGCCATAGTGCTAAGGTGGCCGCGTTGGAGAAGGCAGACGACAACGTCGCGTGGAGCGGAGCACTGCAGCGAGATTTCAAGTGATTTGCTGTCTGTTCATAGTTGCTTCTTGCAGTGCCAGTGCTACTGACTCATTTTGATGATTGTAGGGTAGCAAGAAAGAGCCAAGGGAGGATGATTTGGAGCTTTGCAAATTCCAAATGTCCTGTAAATAGGAAGCTTAAGGAATTCACATGGTCTTCCATATCCCTGAGGAGGCCTATTGTGAAGAACCCTTACCTATCTTATTCAGATATATGGTAGTAGGTAGTTGTTAGTAACTTCTGGCGTTTTTTTTTGTCGGTGCCTTGTGGAAGAACCAGGAGGGGTGTTTCTCATCCTGCACCCAACCACATGGTAAGGGATCATGGTGGTGGTGCTGTTCTTTCTCTTATAGCGATACTAATTTATCGGAGCCCAGCGAGGAAGAAGGGTTTCTTCTCTGGCAATTGAGAGTGATTTTATTCTGATTTTAGCAGTCCAGTGTGCTTTTGGTTGGTGATAGTCTCCGGTCAAAACTAACTTTAGGTGAAAGATTAAGAGTTCTGAATTGCTGTTGCTCTTTGTTTAGGGTTATCATGATGGGTCTCTGGTTGTTTTTTTCCCTGTCCTTCCTTCACATCTCTCTTTATTTAGTATGAGATGGTGGTTGTATTCTACAGAAGTTGATGTAAGCCAGAACTTCTAATGAATATCATGGAAT ] [+] EMBL CA764044 [ GGGGGGATGATTTGGAGCTTTGCAAATTCCAAATGTCCTGTAAATAGGAAGCTTAAGGAATTCACATGGTCTTCCATATCCCTGAGGAGGCCTATTGTGAAGAACCCTTACCTATCTTATTCAGATATATGGTAGTAGGTAGTTGTTAGTAACTTCTGGCGTTTTTTTTTGTCGGTGCCTTGTGGAAGAACCAGGAGGGGTGTTTCTCATCCTGCACCCAACCACATGGTAAGGGATCATGGTGGTGGTGCTGTTCTTTCTCTTATAGCGATACTAATTTATCGGAGCCCAGCGAGGAAGAAGGGTTTCTTCTCTGGCAATTGAGAGTGATTTTATTCTGATTTTAGCAGTCCAGTGTGCTTTTGGTTGGTGATAGTCTCCGGTCAAAACTAACTTTAGGTGAAAGATTAAGAGTTCTGAATTGCTGTTGCTCTTTGTTTAGGGNTATCATGATGGGTCTCTGGTTGTTTTTTTCCCTGTCCTTCCTTCACATCTCTCTTTATTTAGTATGAGATGGTGGTTGTATTCTACAGAAGTTGATGTAAGCCAGAACTTCTAATGAATATCATGGNATGAATT] consensusID : consensus_4586#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 434 fasta sequence [ACCGGACATCAAAGTCTGGNACCATCAACNAAGACCGCGAAGCTTCCCTCATGGCNAAGAAGAAGCAAGGTNGGTCCTTCCCCCAAATGCCCATAGTGCCTAAGGTGGCCNCCGTTGGAAGAAAGGCAAGACGACAACGTCGCCGTGGAGCGGAAGCACTGCAAGCGAGATTTCAAAGTGATTTGCTGTCTGTTCCATAGTTGCTTCTTGCAAGTGCCAGTGCTACTGACTCATTTTGATGGTTGTAGGGTAGCAAGAAAGAGCCAAGGGAGGATGATTTGGAGCTTTGCAAATTCCAAATGTCCTGTAAATAGGAAGCTTAAGGAATTCACATGGTCTTCCATATCCCTGAGGAGGCCTATTGTGAAGAACCCTTACCTATCTTATTCAGATATATGGTAGTAGGTAGTTGTTAGTAACAACTACCTACTACC] [-] EMBL C73915 [ACCGGACATCAAAGTCTGGNACCATCAACNAAGACCGCGAAGCTTCCCTCATGGCNAAGAAGAAGCAAGGTNGGTCCTTCCCCCAAATGCCCATAGTGCCTAAGGTGGCCNCCGTTGGAAGAAAGGCAAGACGACAACGTCGCCGTGGAGCGGAAGCACTGCAAGCGAGATTTCAAAGTGATTTGCTGTCTGTTCCATAGTTGCTTCTTGCAAGTGCCAGTGCTACTGACTCATTTTGATGGTTGTAGGGTAGCAAGAAAGAGCCAAGGGAGGATGATTTGGAGCTTTGCAAATTCCAAATGTCCTGTAAATAGGAAGCTTAAGGAATTCACATGGTCTTCCATATCCCTGAGGAGGCCTATTGTGAAGAACCCTTACCTATCTTATTCAGATATATGGTAGTAGGTAGTTGTTAGTAACAACTACCTACTACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4586#0 TCTCTTTGGGTATTTCAGCCAGAAGACTGGCCTCCTTGTGCATCTTGAGGATTCTCACCT 60 consensus_4586#1 ------------------------------------------------------------ consensus_4586#0 CACCAGGATTCAGTCCACCACCGGAGGGGACGCAGTTTACTGGGAGACCACCATCAATTC 120 consensus_4586#1 ------------------------------------------------------------ consensus_4586#0 GTTCATTGAGGACTACCGCCCGGTGGAGGGTATAATGGTTGCGCACGCTGGTCGCTCCGC 180 consensus_4586#1 ------------------------------------------------------------ consensus_4586#0 TGTGACCCTCTTCCGTTTCGGAGAGGTTGCCATGAGCCACACCAAGACTCGCATGGAGGA 240 consensus_4586#1 ------------------------------------------------------------ consensus_4586#0 GGCATGGAGCATCGAGGAGGTCGCGTTCAATGTCCCTGGCCTCTCCATCGATTGCTTCAT 300 consensus_4586#1 ------------------------------------------------------------ consensus_4586#0 CCCGCCCACCG-ACATCAA-GTCTGGATCCATCAGCGA-GACCGTCGAGCTTCC-TCATG 356 consensus_4586#1 -------ACCGGACATCAAAGTCTGGNACCATCAACNAAGACCGCGAAGCTTCCCTCATG 53 **** ******* ****** ****** * * ***** ******* ***** consensus_4586#0 GCGAGAAG--AGCAAGGTTGGTCTTCTCC---AATGCC-ATAGTGC-TAAGGTGGCCGC- 408 consensus_4586#1 GCNAAGAAGAAGCAAGGTNGGTCCTTCCCCCAAATGCCCATAGTGCCTAAGGTGGCCNCC 113 ** * * ******** **** * ** ****** ******* ********** * consensus_4586#0 GTTGGAG--AAGGCA-GACGACAACGTCGC-GTGGAGCGGA-GCACTGCA-GCGAGATTT 462 consensus_4586#1 GTTGGAAGAAAGGCAAGACGACAACGTCGCCGTGGAGCGGAAGCACTGCAAGCGAGATTT 173 ****** ****** ************** ********** ******** ********* consensus_4586#0 CAA-GTGATTTGCTGTCTGTTC-ATAGTTGCTTCTTGCA-GTGCCAGTGCTACTGACTCA 519 consensus_4586#1 CAAAGTGATTTGCTGTCTGTTCCATAGTTGCTTCTTGCAAGTGCCAGTGCTACTGACTCA 233 *** ****************** **************** ******************** consensus_4586#0 TTTTGATGATTGTAGGGTAGCAAGAAAGAGCCAAGGGAGGATGATTTGGAGCTTTGCAAA 579 consensus_4586#1 TTTTGATGGTTGTAGGGTAGCAAGAAAGAGCCAAGGGAGGATGATTTGGAGCTTTGCAAA 293 ******** *************************************************** consensus_4586#0 TTCCAAATGTCCTGTAAATAGGAAGCTTAAGGAATTCACATGGTCTTCCATATCCCTGAG 639 consensus_4586#1 TTCCAAATGTCCTGTAAATAGGAAGCTTAAGGAATTCACATGGTCTTCCATATCCCTGAG 353 ************************************************************ consensus_4586#0 GAGGCCTATTGTGAAGAACCCTTACCTATCTTATTCAGATATATGGTAGTAGGTAGTTGT 699 consensus_4586#1 GAGGCCTATTGTGAAGAACCCTTACCTATCTTATTCAGATATATGGTAGTAGGTAGTTGT 413 ************************************************************ consensus_4586#0 TAGTAACTTCTGGCGTTTTTTTTTGTCGGTGCCTTGTGGAAGAACCAGGAGGGGTGTTTC 759 consensus_4586#1 TAGTAACAACTACCTACTACC--------------------------------------- 434 ******* ** * * consensus_4586#0 TCATCCTGCACCCAACCACATGGTAAGGGATCATGGTGGTGGTGCTGTTCTTTCTCTTAT 819 consensus_4586#1 ------------------------------------------------------------ consensus_4586#0 AGCGATACTAATTTATCGGAGCCCAGCGAGGAAGAAGGGTTTCTTCTCTGGCAATTGAGA 879 consensus_4586#1 ------------------------------------------------------------ consensus_4586#0 GTGATTTTATTCTGATTTTAGCAGTCCAGTGTGCTTTTGGTTGGTGATAGTCTCCGGTCA 939 consensus_4586#1 ------------------------------------------------------------ consensus_4586#0 AAACTAACTTTAGGTGAAAGATTAAGAGTTCTGAATTGCTGTTGCTCTTTGTTTAGGGTT 999 consensus_4586#1 ------------------------------------------------------------ consensus_4586#0 ATCATGATGGGTCTCTGGTTGTTTTTTTCCCTGTCCTTCCTTCACATCTCTCTTTATTTA 1059 consensus_4586#1 ------------------------------------------------------------ consensus_4586#0 GTATGAGATGGTGGTTGTATTCTACAGAAGTTGATGTAAGCCAGAACTTCTAATGAATAT 1119 consensus_4586#1 ------------------------------------------------------------ consensus_4586#0 CATGGAATGAATT 1132 consensus_4586#1 ------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||