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Oryza sativa
cluster # 4586 cluster # 4586       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4586#0 length = 1132 sequences # 2  
consensus_4586#1 length = 434 sequences # 1  

consensusID : consensus_4586#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1132
fasta sequence
                              [TCTCTTTGGGTATTTCAGCCAGAAGACTGGCCTCCTTGTGCATCTTGAGGATTCTCACCTCACCAGGATTCAGTCCACCACCGGAGGGGACGCAGTTTACTGGGAGACCACCATCAATTCGTTCATTGAGGACTACCGCCCGGTGGAGGGTATAATGGTTGCGCACGCTGGTCGCTCCGCTGTGACCCTCTTCCGTTTCGGAGAGGTTGCCATGAGCCACACCAAGACTCGCATGGAGGAGGCATGGAGCATCGAGGAGGTCGCGTTCAATGTCCCTGGCCTCTCCATCGATTGCTTCATCCCGCCCACCGACATCAAGTCTGGATCCATCAGCGAGACCGTCGAGCTTCCTCATGGCGAGAAGAGCAAGGTTGGTCTTCTCCAATGCCATAGTGCTAAGGTGGCCGCGTTGGAGAAGGCAGACGACAACGTCGCGTGGAGCGGAGCACTGCAGCGAGATTTCAAGTGATTTGCTGTCTGTTCATAGTTGCTTCTTGCAGTGCCAGTGCTACTGACTCATTTTGATGATTGTAGGGTAGCAAGAAAGAGCCAAGGGAGGATGATTTGGAGCTTTGCAAATTCCAAATGTCCTGTAAATAGGAAGCTTAAGGAATTCACATGGTCTTCCATATCCCTGAGGAGGCCTATTGTGAAGAACCCTTACCTATCTTATTCAGATATATGGTAGTAGGTAGTTGTTAGTAACTTCTGGCGTTTTTTTTTGTCGGTGCCTTGTGGAAGAACCAGGAGGGGTGTTTCTCATCCTGCACCCAACCACATGGTAAGGGATCATGGTGGTGGTGCTGTTCTTTCTCTTATAGCGATACTAATTTATCGGAGCCCAGCGAGGAAGAAGGGTTTCTTCTCTGGCAATTGAGAGTGATTTTATTCTGATTTTAGCAGTCCAGTGTGCTTTTGGTTGGTGATAGTCTCCGGTCAAAACTAACTTTAGGTGAAAGATTAAGAGTTCTGAATTGCTGTTGCTCTTTGTTTAGGGTTATCATGATGGGTCTCTGGTTGTTTTTTTCCCTGTCCTTCCTTCACATCTCTCTTTATTTAGTATGAGATGGTGGTTGTATTCTACAGAAGTTGATGTAAGCCAGAACTTCTAATGAATATCATGGAATGAATT]

[+] EMBL AK059252             [TCTCTTTGGGTATTTCAGCCAGAAGACTGGCCTCCTTGTGCATCTTGAGGATTCTCACCTCACCAGGATTCAGTCCACCACCGGAGGGGACGCAGTTTACTGGGAGACCACCATCAATTCGTTCATTGAGGACTACCGCCCGGTGGAGGGTATAATGGTTGCGCACGCTGGTCGCTCCGCTGTGACCCTCTTCCGTTTCGGAGAGGTTGCCATGAGCCACACCAAGACTCGCATGGAGGAGGCATGGAGCATCGAGGAGGTCGCGTTCAATGTCCCTGGCCTCTCCATCGATTGCTTCATCCCGCCCACCGACATCAAGTCTGGATCCATCAGCGAGACCGTCGAGCTTCCTCATGGCGAGAAGAGCAAGGTTGGTCTTCTCCAATGCCATAGTGCTAAGGTGGCCGCGTTGGAGAAGGCAGACGACAACGTCGCGTGGAGCGGAGCACTGCAGCGAGATTTCAAGTGATTTGCTGTCTGTTCATAGTTGCTTCTTGCAGTGCCAGTGCTACTGACTCATTTTGATGATTGTAGGGTAGCAAGAAAGAGCCAAGGGAGGATGATTTGGAGCTTTGCAAATTCCAAATGTCCTGTAAATAGGAAGCTTAAGGAATTCACATGGTCTTCCATATCCCTGAGGAGGCCTATTGTGAAGAACCCTTACCTATCTTATTCAGATATATGGTAGTAGGTAGTTGTTAGTAACTTCTGGCGTTTTTTTTTGTCGGTGCCTTGTGGAAGAACCAGGAGGGGTGTTTCTCATCCTGCACCCAACCACATGGTAAGGGATCATGGTGGTGGTGCTGTTCTTTCTCTTATAGCGATACTAATTTATCGGAGCCCAGCGAGGAAGAAGGGTTTCTTCTCTGGCAATTGAGAGTGATTTTATTCTGATTTTAGCAGTCCAGTGTGCTTTTGGTTGGTGATAGTCTCCGGTCAAAACTAACTTTAGGTGAAAGATTAAGAGTTCTGAATTGCTGTTGCTCTTTGTTTAGGGTTATCATGATGGGTCTCTGGTTGTTTTTTTCCCTGTCCTTCCTTCACATCTCTCTTTATTTAGTATGAGATGGTGGTTGTATTCTACAGAAGTTGATGTAAGCCAGAACTTCTAATGAATATCATGGAAT     ]
[+] EMBL CA764044             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GGGGGGATGATTTGGAGCTTTGCAAATTCCAAATGTCCTGTAAATAGGAAGCTTAAGGAATTCACATGGTCTTCCATATCCCTGAGGAGGCCTATTGTGAAGAACCCTTACCTATCTTATTCAGATATATGGTAGTAGGTAGTTGTTAGTAACTTCTGGCGTTTTTTTTTGTCGGTGCCTTGTGGAAGAACCAGGAGGGGTGTTTCTCATCCTGCACCCAACCACATGGTAAGGGATCATGGTGGTGGTGCTGTTCTTTCTCTTATAGCGATACTAATTTATCGGAGCCCAGCGAGGAAGAAGGGTTTCTTCTCTGGCAATTGAGAGTGATTTTATTCTGATTTTAGCAGTCCAGTGTGCTTTTGGTTGGTGATAGTCTCCGGTCAAAACTAACTTTAGGTGAAAGATTAAGAGTTCTGAATTGCTGTTGCTCTTTGTTTAGGGNTATCATGATGGGTCTCTGGTTGTTTTTTTCCCTGTCCTTCCTTCACATCTCTCTTTATTTAGTATGAGATGGTGGTTGTATTCTACAGAAGTTGATGTAAGCCAGAACTTCTAATGAATATCATGGNATGAATT]


>consensus_4586#0 TCTCTTTGGGTATTTCAGCCAGAAGACTGGCCTCCTTGTGCATCTTGAGGATTCTCACCT CACCAGGATTCAGTCCACCACCGGAGGGGACGCAGTTTACTGGGAGACCACCATCAATTC GTTCATTGAGGACTACCGCCCGGTGGAGGGTATAATGGTTGCGCACGCTGGTCGCTCCGC TGTGACCCTCTTCCGTTTCGGAGAGGTTGCCATGAGCCACACCAAGACTCGCATGGAGGA GGCATGGAGCATCGAGGAGGTCGCGTTCAATGTCCCTGGCCTCTCCATCGATTGCTTCAT CCCGCCCACCGACATCAAGTCTGGATCCATCAGCGAGACCGTCGAGCTTCCTCATGGCGA GAAGAGCAAGGTTGGTCTTCTCCAATGCCATAGTGCTAAGGTGGCCGCGTTGGAGAAGGC AGACGACAACGTCGCGTGGAGCGGAGCACTGCAGCGAGATTTCAAGTGATTTGCTGTCTG TTCATAGTTGCTTCTTGCAGTGCCAGTGCTACTGACTCATTTTGATGATTGTAGGGTAGC AAGAAAGAGCCAAGGGAGGATGATTTGGAGCTTTGCAAATTCCAAATGTCCTGTAAATAG GAAGCTTAAGGAATTCACATGGTCTTCCATATCCCTGAGGAGGCCTATTGTGAAGAACCC TTACCTATCTTATTCAGATATATGGTAGTAGGTAGTTGTTAGTAACTTCTGGCGTTTTTT TTTGTCGGTGCCTTGTGGAAGAACCAGGAGGGGTGTTTCTCATCCTGCACCCAACCACAT GGTAAGGGATCATGGTGGTGGTGCTGTTCTTTCTCTTATAGCGATACTAATTTATCGGAG CCCAGCGAGGAAGAAGGGTTTCTTCTCTGGCAATTGAGAGTGATTTTATTCTGATTTTAG CAGTCCAGTGTGCTTTTGGTTGGTGATAGTCTCCGGTCAAAACTAACTTTAGGTGAAAGA TTAAGAGTTCTGAATTGCTGTTGCTCTTTGTTTAGGGTTATCATGATGGGTCTCTGGTTG TTTTTTTCCCTGTCCTTCCTTCACATCTCTCTTTATTTAGTATGAGATGGTGGTTGTATT CTACAGAAGTTGATGTAAGCCAGAACTTCTAATGAATATCATGGAATGAATT



consensusID : consensus_4586#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 434
fasta sequence
                              [ACCGGACATCAAAGTCTGGNACCATCAACNAAGACCGCGAAGCTTCCCTCATGGCNAAGAAGAAGCAAGGTNGGTCCTTCCCCCAAATGCCCATAGTGCCTAAGGTGGCCNCCGTTGGAAGAAAGGCAAGACGACAACGTCGCCGTGGAGCGGAAGCACTGCAAGCGAGATTTCAAAGTGATTTGCTGTCTGTTCCATAGTTGCTTCTTGCAAGTGCCAGTGCTACTGACTCATTTTGATGGTTGTAGGGTAGCAAGAAAGAGCCAAGGGAGGATGATTTGGAGCTTTGCAAATTCCAAATGTCCTGTAAATAGGAAGCTTAAGGAATTCACATGGTCTTCCATATCCCTGAGGAGGCCTATTGTGAAGAACCCTTACCTATCTTATTCAGATATATGGTAGTAGGTAGTTGTTAGTAACAACTACCTACTACC]

[-] EMBL C73915               [ACCGGACATCAAAGTCTGGNACCATCAACNAAGACCGCGAAGCTTCCCTCATGGCNAAGAAGAAGCAAGGTNGGTCCTTCCCCCAAATGCCCATAGTGCCTAAGGTGGCCNCCGTTGGAAGAAAGGCAAGACGACAACGTCGCCGTGGAGCGGAAGCACTGCAAGCGAGATTTCAAAGTGATTTGCTGTCTGTTCCATAGTTGCTTCTTGCAAGTGCCAGTGCTACTGACTCATTTTGATGGTTGTAGGGTAGCAAGAAAGAGCCAAGGGAGGATGATTTGGAGCTTTGCAAATTCCAAATGTCCTGTAAATAGGAAGCTTAAGGAATTCACATGGTCTTCCATATCCCTGAGGAGGCCTATTGTGAAGAACCCTTACCTATCTTATTCAGATATATGGTAGTAGGTAGTTGTTAGTAACAACTACCTACTACC]


>consensus_4586#1 ACCGGACATCAAAGTCTGGNACCATCAACNAAGACCGCGAAGCTTCCCTCATGGCNAAGA AGAAGCAAGGTNGGTCCTTCCCCCAAATGCCCATAGTGCCTAAGGTGGCCNCCGTTGGAA GAAAGGCAAGACGACAACGTCGCCGTGGAGCGGAAGCACTGCAAGCGAGATTTCAAAGTG ATTTGCTGTCTGTTCCATAGTTGCTTCTTGCAAGTGCCAGTGCTACTGACTCATTTTGAT GGTTGTAGGGTAGCAAGAAAGAGCCAAGGGAGGATGATTTGGAGCTTTGCAAATTCCAAA TGTCCTGTAAATAGGAAGCTTAAGGAATTCACATGGTCTTCCATATCCCTGAGGAGGCCT ATTGTGAAGAACCCTTACCTATCTTATTCAGATATATGGTAGTAGGTAGTTGTTAGTAAC AACTACCTACTACC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4586#0      TCTCTTTGGGTATTTCAGCCAGAAGACTGGCCTCCTTGTGCATCTTGAGGATTCTCACCT 60
consensus_4586#1      ------------------------------------------------------------
                                                                                  

consensus_4586#0      CACCAGGATTCAGTCCACCACCGGAGGGGACGCAGTTTACTGGGAGACCACCATCAATTC 120
consensus_4586#1      ------------------------------------------------------------
                                                                                  

consensus_4586#0      GTTCATTGAGGACTACCGCCCGGTGGAGGGTATAATGGTTGCGCACGCTGGTCGCTCCGC 180
consensus_4586#1      ------------------------------------------------------------
                                                                                  

consensus_4586#0      TGTGACCCTCTTCCGTTTCGGAGAGGTTGCCATGAGCCACACCAAGACTCGCATGGAGGA 240
consensus_4586#1      ------------------------------------------------------------
                                                                                  

consensus_4586#0      GGCATGGAGCATCGAGGAGGTCGCGTTCAATGTCCCTGGCCTCTCCATCGATTGCTTCAT 300
consensus_4586#1      ------------------------------------------------------------
                                                                                  

consensus_4586#0      CCCGCCCACCG-ACATCAA-GTCTGGATCCATCAGCGA-GACCGTCGAGCTTCC-TCATG 356
consensus_4586#1      -------ACCGGACATCAAAGTCTGGNACCATCAACNAAGACCGCGAAGCTTCCCTCATG 53
                             **** ******* ******  ****** * * *****   ******* *****

consensus_4586#0      GCGAGAAG--AGCAAGGTTGGTCTTCTCC---AATGCC-ATAGTGC-TAAGGTGGCCGC- 408
consensus_4586#1      GCNAAGAAGAAGCAAGGTNGGTCCTTCCCCCAAATGCCCATAGTGCCTAAGGTGGCCNCC 113
                      ** *  *   ******** **** *  **   ****** ******* ********** * 

consensus_4586#0      GTTGGAG--AAGGCA-GACGACAACGTCGC-GTGGAGCGGA-GCACTGCA-GCGAGATTT 462
consensus_4586#1      GTTGGAAGAAAGGCAAGACGACAACGTCGCCGTGGAGCGGAAGCACTGCAAGCGAGATTT 173
                      ******   ****** ************** ********** ******** *********

consensus_4586#0      CAA-GTGATTTGCTGTCTGTTC-ATAGTTGCTTCTTGCA-GTGCCAGTGCTACTGACTCA 519
consensus_4586#1      CAAAGTGATTTGCTGTCTGTTCCATAGTTGCTTCTTGCAAGTGCCAGTGCTACTGACTCA 233
                      *** ****************** **************** ********************

consensus_4586#0      TTTTGATGATTGTAGGGTAGCAAGAAAGAGCCAAGGGAGGATGATTTGGAGCTTTGCAAA 579
consensus_4586#1      TTTTGATGGTTGTAGGGTAGCAAGAAAGAGCCAAGGGAGGATGATTTGGAGCTTTGCAAA 293
                      ******** ***************************************************

consensus_4586#0      TTCCAAATGTCCTGTAAATAGGAAGCTTAAGGAATTCACATGGTCTTCCATATCCCTGAG 639
consensus_4586#1      TTCCAAATGTCCTGTAAATAGGAAGCTTAAGGAATTCACATGGTCTTCCATATCCCTGAG 353
                      ************************************************************

consensus_4586#0      GAGGCCTATTGTGAAGAACCCTTACCTATCTTATTCAGATATATGGTAGTAGGTAGTTGT 699
consensus_4586#1      GAGGCCTATTGTGAAGAACCCTTACCTATCTTATTCAGATATATGGTAGTAGGTAGTTGT 413
                      ************************************************************

consensus_4586#0      TAGTAACTTCTGGCGTTTTTTTTTGTCGGTGCCTTGTGGAAGAACCAGGAGGGGTGTTTC 759
consensus_4586#1      TAGTAACAACTACCTACTACC--------------------------------------- 434
                      *******  **  *   *                                          

consensus_4586#0      TCATCCTGCACCCAACCACATGGTAAGGGATCATGGTGGTGGTGCTGTTCTTTCTCTTAT 819
consensus_4586#1      ------------------------------------------------------------
                                                                                  

consensus_4586#0      AGCGATACTAATTTATCGGAGCCCAGCGAGGAAGAAGGGTTTCTTCTCTGGCAATTGAGA 879
consensus_4586#1      ------------------------------------------------------------
                                                                                  

consensus_4586#0      GTGATTTTATTCTGATTTTAGCAGTCCAGTGTGCTTTTGGTTGGTGATAGTCTCCGGTCA 939
consensus_4586#1      ------------------------------------------------------------
                                                                                  

consensus_4586#0      AAACTAACTTTAGGTGAAAGATTAAGAGTTCTGAATTGCTGTTGCTCTTTGTTTAGGGTT 999
consensus_4586#1      ------------------------------------------------------------
                                                                                  

consensus_4586#0      ATCATGATGGGTCTCTGGTTGTTTTTTTCCCTGTCCTTCCTTCACATCTCTCTTTATTTA 1059
consensus_4586#1      ------------------------------------------------------------
                                                                                  

consensus_4586#0      GTATGAGATGGTGGTTGTATTCTACAGAAGTTGATGTAAGCCAGAACTTCTAATGAATAT 1119
consensus_4586#1      ------------------------------------------------------------
                                                                                  

consensus_4586#0      CATGGAATGAATT 1132
consensus_4586#1      -------------
                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)